BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC124215.1 + phase: 0
(45 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP034474 43 1e-05
TC17618 42 2e-05
TC16678 similar to UP|Q8GVE2 (Q8GVE2) Chitin-inducible gibberell... 39 2e-04
AV770800 35 0.003
TC14505 similar to UP|Q7Y1B6 (Q7Y1B6) GAI-like protein, partial ... 35 0.004
TC14825 similar to UP|Q8S4W7 (Q8S4W7) GAI-like protein 1, partia... 33 0.009
BP077395 33 0.009
TC17479 similar to PIR|E86347|E86347 scarecrow-like 1 protein F2... 32 0.027
TC14740 similar to UP|Q8W584 (Q8W584) AT4g17230/dl4650c, partial... 31 0.061
AV408567 30 0.080
TC16366 similar to PIR|E96542|E96542 scarecrow-like protein [imp... 30 0.080
TC19775 similar to GB|AAF75234.1|8453100|AF233752 short-root pro... 30 0.10
TC10491 similar to UP|Q8L553 (Q8L553) SCARECROW transcriptional ... 30 0.10
TC10172 similar to UP|Q8GVE1 (Q8GVE1) Chitin-inducible gibberell... 30 0.14
TC18636 similar to UP|Q8W584 (Q8W584) AT4g17230/dl4650c, partial... 29 0.23
BP044387 28 0.30
BP036551 28 0.52
TC14844 similar to UP|Q8L553 (Q8L553) SCARECROW transcriptional ... 27 0.68
TC11532 homologue to UP|Q8L5K5 (Q8L5K5) Ovule/fiber cell elongat... 26 1.5
BP068024 25 2.6
>BP034474
Length = 540
Score = 43.1 bits (100), Expect = 1e-05
Identities = 19/35 (54%), Positives = 27/35 (76%)
Frame = -3
Query: 11 EDNGILKLGWKDLCLLTASAWRPPFHTNNIIPHHN 45
E+NG LK+GWKDL LL ASAW+P +++I +H+
Sbjct: 538 EENGSLKIGWKDLSLLIASAWQP----SDLITYHD 446
>TC17618
Length = 543
Score = 42.4 bits (98), Expect = 2e-05
Identities = 19/25 (76%), Positives = 20/25 (80%)
Frame = +2
Query: 21 KDLCLLTASAWRPPFHTNNIIPHHN 45
KDLCLLTASAWRPPF IPHH+
Sbjct: 2 KDLCLLTASAWRPPF---TAIPHHH 67
>TC16678 similar to UP|Q8GVE2 (Q8GVE2) Chitin-inducible
gibberellin-responsive protein, partial (14%)
Length = 740
Score = 39.3 bits (90), Expect = 2e-04
Identities = 16/28 (57%), Positives = 22/28 (78%)
Frame = +3
Query: 4 SEGYTLVEDNGILKLGWKDLCLLTASAW 31
SE YTL+E +G + LGWK+ L++ASAW
Sbjct: 159 SEHYTLIEKDGAMLLGWKNRSLISASAW 242
>AV770800
Length = 514
Score = 35.0 bits (79), Expect = 0.003
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = -1
Query: 1 MFPSEGYTLVEDNGILKLGWKDLCLLTASAWR 32
+F SEGY + E G L LGW L ASAW+
Sbjct: 235 LFSSEGYCVEEKEGCLTLGWHSRPPLAASAWQ 140
>TC14505 similar to UP|Q7Y1B6 (Q7Y1B6) GAI-like protein, partial (16%)
Length = 670
Score = 34.7 bits (78), Expect = 0.004
Identities = 14/30 (46%), Positives = 19/30 (62%)
Frame = +1
Query: 5 EGYTLVEDNGILKLGWKDLCLLTASAWRPP 34
+GY + E+NG L LGW L+ SAW+ P
Sbjct: 238 DGYRVEENNGCLMLGWHTRPLIATSAWKLP 327
>TC14825 similar to UP|Q8S4W7 (Q8S4W7) GAI-like protein 1, partial (47%)
Length = 1392
Score = 33.5 bits (75), Expect = 0.009
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +2
Query: 5 EGYTLVEDNGILKLGWKDLCLLTASAWRPPFHTNNIIPH 43
+GY + E+NG L LGW L+ SAW+ +N++ H
Sbjct: 779 DGYRVEENNGCLTLGWHTRPLIATSAWQ--LASNSVATH 889
>BP077395
Length = 397
Score = 33.5 bits (75), Expect = 0.009
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = -3
Query: 7 YTLVEDNGILKLGWKDLCLLTASAWRPP 34
Y + E+ G L GW+D L+ ASAWR P
Sbjct: 254 YKIKEEMGALHFGWEDKNLIVASAWR*P 171
>TC17479 similar to PIR|E86347|E86347 scarecrow-like 1 protein F24J8.8 -
Arabidopsis thaliana {Arabidopsis thaliana;}, partial
(5%)
Length = 491
Score = 32.0 bits (71), Expect = 0.027
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +1
Query: 7 YTLVEDNGILKLGWKDLCLLTASAWRPPFH 36
Y + ++ G L GW+D L+ ASAW+ P +
Sbjct: 19 YKMKDEMGALHFGWEDKNLIVASAWK*PLY 108
>TC14740 similar to UP|Q8W584 (Q8W584) AT4g17230/dl4650c, partial (57%)
Length = 1406
Score = 30.8 bits (68), Expect = 0.061
Identities = 13/29 (44%), Positives = 18/29 (61%)
Frame = +1
Query: 4 SEGYTLVEDNGILKLGWKDLCLLTASAWR 32
+ Y L + +G L LGW L+T+SAWR
Sbjct: 946 NHNYRLEQRDGALCLGWMKRALVTSSAWR 1032
>AV408567
Length = 401
Score = 30.4 bits (67), Expect = 0.080
Identities = 13/29 (44%), Positives = 19/29 (64%)
Frame = -1
Query: 4 SEGYTLVEDNGILKLGWKDLCLLTASAWR 32
S+ Y LVE +G L LGW + L+ + AW+
Sbjct: 356 SDRYRLVERDGALYLGWMNRDLVASCAWK 270
>TC16366 similar to PIR|E96542|E96542 scarecrow-like protein [imported] -
Arabidopsis thaliana {Arabidopsis thaliana;}, partial
(27%)
Length = 711
Score = 30.4 bits (67), Expect = 0.080
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +3
Query: 7 YTLVEDNGILKLGWKDLCLLTASAWR 32
YTL E +G L LGW + L+ + AWR
Sbjct: 354 YTLEERDGALFLGWMNQVLVASCAWR 431
>TC19775 similar to GB|AAF75234.1|8453100|AF233752 short-root protein
{Arabidopsis thaliana;} , partial (7%)
Length = 581
Score = 30.0 bits (66), Expect = 0.10
Identities = 15/31 (48%), Positives = 22/31 (70%), Gaps = 2/31 (6%)
Frame = +2
Query: 5 EGYTLVE--DNGILKLGWKDLCLLTASAWRP 33
EG+++ + D GIL L WK+ ++ ASAWRP
Sbjct: 113 EGWSMTQCSDGGIL-LTWKEQAVVWASAWRP 202
>TC10491 similar to UP|Q8L553 (Q8L553) SCARECROW transcriptional
regulator-like, partial (9%)
Length = 397
Score = 30.0 bits (66), Expect = 0.10
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +1
Query: 6 GYTLVEDNGILKLGWKDLCLLTASAWR 32
G T+ E+NG + GW L ASAWR
Sbjct: 52 GLTVKEENGGICFGWMGRTLTVASAWR 132
>TC10172 similar to UP|Q8GVE1 (Q8GVE1) Chitin-inducible
gibberellin-responsive protein (OJ1127_E01.12 protein),
partial (4%)
Length = 691
Score = 29.6 bits (65), Expect = 0.14
Identities = 17/37 (45%), Positives = 21/37 (55%), Gaps = 4/37 (10%)
Frame = +2
Query: 1 MFPSEGYTLV---EDNGI-LKLGWKDLCLLTASAWRP 33
M+ E Y+++ ED G L LGW D L T SAW P
Sbjct: 152 MYSCENYSVMKQEEDGGEGLTLGWLDQPLYTVSAWTP 262
>TC18636 similar to UP|Q8W584 (Q8W584) AT4g17230/dl4650c, partial (10%)
Length = 813
Score = 28.9 bits (63), Expect = 0.23
Identities = 13/29 (44%), Positives = 17/29 (57%)
Frame = +1
Query: 4 SEGYTLVEDNGILKLGWKDLCLLTASAWR 32
+E Y L + L L WK+ + TASAWR
Sbjct: 199 NENYRLEHKDVALYLTWKNRAMCTASAWR 285
>BP044387
Length = 378
Score = 28.5 bits (62), Expect = 0.30
Identities = 12/28 (42%), Positives = 16/28 (56%)
Frame = -2
Query: 5 EGYTLVEDNGILKLGWKDLCLLTASAWR 32
EGY + +NG + W D L + SAWR
Sbjct: 188 EGYRMRGENGCVANCWPDRSLFSISAWR 105
>BP036551
Length = 428
Score = 27.7 bits (60), Expect = 0.52
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Frame = -2
Query: 5 EGYTLVED---NGILKLGWKDLCLLTASAWRPPFHTNNI 40
E + ++ED NG+ +LGWK + + S++ P F NNI
Sbjct: 307 EYHEIIEDEIINGLQQLGWKKVDVSFHSSFWPFFAHNNI 191
>TC14844 similar to UP|Q8L553 (Q8L553) SCARECROW transcriptional
regulator-like, partial (49%)
Length = 1051
Score = 27.3 bits (59), Expect = 0.68
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3
Query: 8 TLVEDNGILKLGWKDLCLLTASAWR 32
T+ E+NG + GW L ASAWR
Sbjct: 654 TVKEENGGICCGWVGRTLTVASAWR 728
>TC11532 homologue to UP|Q8L5K5 (Q8L5K5) Ovule/fiber cell elongation protein
Ghfe1, partial (24%)
Length = 415
Score = 26.2 bits (56), Expect = 1.5
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -3
Query: 23 LCLLTASAWRPPFHTNNIIP 42
LC+L + PP HT N+IP
Sbjct: 212 LCMLIEPGFEPPPHTVNLIP 153
>BP068024
Length = 403
Score = 25.4 bits (54), Expect = 2.6
Identities = 8/18 (44%), Positives = 13/18 (71%)
Frame = -1
Query: 5 EGYTLVEDNGILKLGWKD 22
EGY + E+NG + + W+D
Sbjct: 334 EGYRMREENGCVAISWQD 281
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.322 0.141 0.490
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,394,721
Number of Sequences: 28460
Number of extensions: 15978
Number of successful extensions: 132
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of query: 45
length of database: 4,897,600
effective HSP length: 21
effective length of query: 24
effective length of database: 4,299,940
effective search space: 103198560
effective search space used: 103198560
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)
Medicago: description of AC124215.1