BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC124214.6 + phase: 0
(484 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC9818 similar to UP|Q7XA50 (Q7XA50) Sorbitol-like transporter, ... 44 4e-05
TC8113 weakly similar to UP|O23213 (O23213) Sugar transporter li... 37 0.009
TC11195 UP|Q9FJH4 (Q9FJH4) Similarity to ring finger protein, pa... 34 0.061
TC18462 weakly similar to UP|Q945M3 (Q945M3) At1g23890/T23E23_13... 33 0.10
TC8786 similar to UP|Q9ZTK7 (Q9ZTK7) CONSTANS-like protein 2, pa... 32 0.23
TC18762 similar to UP|Q9VVG2 (Q9VVG2) CG13731-PA, partial (3%) 31 0.39
AV411852 31 0.51
TC8461 homologue to UP|AAQ08194 (AAQ08194) Eukaryotic translatio... 30 0.67
BP042407 30 0.67
TC12375 weakly similar to GB|AAA59989.1|189479|HUMP53T p53 cellu... 30 0.88
TC9027 weakly similar to UP|AAQ82447 (AAQ82447) SufB, partial (51%) 30 0.88
BI417637 29 2.0
TC17328 weakly similar to UP|Q9FGH3 (Q9FGH3) Dihydroflavonol 4-r... 29 2.0
TC8347 UP|ATPH_LOTJA (P12231) ATP synthase C chain (Lipid-bindi... 28 2.6
TC17733 similar to UP|Q7XA63 (Q7XA63) At5g19860, partial (63%) 28 2.6
AV414649 28 2.6
TC16289 weakly similar to GB|AAP13385.1|30023704|BT006277 At3g56... 28 3.3
TC18087 similar to UP|Q9LF46 (Q9LF46) 2-hydroxyphytanoyl-CoA lya... 28 3.3
TC14463 similar to UP|Q9SLF1 (Q9SLF1) Nodulin-like protein (At2g... 28 3.3
TC9870 weakly similar to UP|NO16_MEDTR (P93328) Early nodulin 16... 28 4.4
>TC9818 similar to UP|Q7XA50 (Q7XA50) Sorbitol-like transporter, partial
(62%)
Length = 1162
Score = 44.3 bits (103), Expect = 4e-05
Identities = 37/149 (24%), Positives = 63/149 (41%), Gaps = 3/149 (2%)
Frame = +2
Query: 91 IQGDFNLTNFQDGVLSSAFMVGLLIASPIFASLSKSVNPFRLIGVGLSVWTVATLCCGLS 150
I+ D +++ + +L + LI S + S + I +++ V L G S
Sbjct: 320 IKRDLKVSDVKIEILLGIINLYSLIGSGLAGRTSDWIGRRYTIVFAGAIFFVGALLMGFS 499
Query: 151 FNFWSITVCRMLVGVGEASFISLAAPFIDDNAPASQKTVWLSIFYMCIPGGYAIGYVYG- 209
N+W + R + G+G + +A + + +PAS + S + I GG +GY+
Sbjct: 500 PNYWFLMFGRFIAGIGIGYALMIAPVYTAEVSPASSRGFLTSFPEVFINGGILLGYISNF 679
Query: 210 --GVVGSHFGWRYAFWVEAVLMLPFAILG 236
+ GWR V A LP ILG
Sbjct: 680 AFSKLSLKVGWRMMLGVGA---LPSVILG 757
>TC8113 weakly similar to UP|O23213 (O23213) Sugar transporter like
protein, partial (93%)
Length = 1865
Score = 36.6 bits (83), Expect = 0.009
Identities = 35/154 (22%), Positives = 64/154 (40%), Gaps = 3/154 (1%)
Frame = +2
Query: 91 IQGDFNLTNFQDGVLSSAFMVGLLIASPIFASLSKSVNPFRLIGVGLSVWTVATLCCGLS 150
I+ D +++ Q VL+ + L+ S + I + ++ V + G
Sbjct: 200 IKEDIGISDTQQEVLAGILNICALVGCLAAGKTSDYIGRRYTIFLASILFLVGAVFMGYG 379
Query: 151 FNFWSITVCRMLVGVGEASFISLAAPFIDDNAPASQKTVWLSIFYMCIPGGYAIGYV--- 207
NF + R + G+G ++ A + + + AS + S+ +CI G IGY+
Sbjct: 380 PNFAILMFGRCVCGLGVGFALTTAPVYSAELSSASTRGFLTSLPEVCIGLGIFIGYISNY 559
Query: 208 YGGVVGSHFGWRYAFWVEAVLMLPFAILGFVMKP 241
+ G + GWR + A+ L A LG + P
Sbjct: 560 FLGKLALTLGWRLMLGLAAIPSLGLA-LGILTMP 658
>TC11195 UP|Q9FJH4 (Q9FJH4) Similarity to ring finger protein, partial (7%)
Length = 594
Score = 33.9 bits (76), Expect = 0.061
Identities = 20/49 (40%), Positives = 23/49 (46%), Gaps = 8/49 (16%)
Frame = +1
Query: 9 PKPATTTSSSSTPNPVPSSVEPNMLPKSTMIPAT--------SWFTPKR 49
P T T SS P+P PS+ P P S +IP T S FTP R
Sbjct: 349 PLTTTPTISSPLPDPEPSTTSPRKSPGSCLIPTTRTPTGYSGSVFTPTR 495
>TC18462 weakly similar to UP|Q945M3 (Q945M3) At1g23890/T23E23_13, partial
(26%)
Length = 755
Score = 33.1 bits (74), Expect = 0.10
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +3
Query: 9 PKPATTTSSSSTPNPVPSSVEPNMLPKSTMIPATSWFTP 47
P P +T++S T P+PSS +P S IP+T+ TP
Sbjct: 153 PSPPCSTATSITSTPIPSSSDPVPPISSFSIPSTALSTP 269
>TC8786 similar to UP|Q9ZTK7 (Q9ZTK7) CONSTANS-like protein 2, partial
(33%)
Length = 594
Score = 32.0 bits (71), Expect = 0.23
Identities = 17/33 (51%), Positives = 22/33 (66%)
Frame = +1
Query: 11 PATTTSSSSTPNPVPSSVEPNMLPKSTMIPATS 43
PAT TS+ TP+P ++V P+ LP ST P TS
Sbjct: 298 PATMTSTPPTPSPPATNVPPS-LPSSTPPPPTS 393
>TC18762 similar to UP|Q9VVG2 (Q9VVG2) CG13731-PA, partial (3%)
Length = 759
Score = 31.2 bits (69), Expect = 0.39
Identities = 14/36 (38%), Positives = 19/36 (51%)
Frame = +2
Query: 9 PKPATTTSSSSTPNPVPSSVEPNMLPKSTMIPATSW 44
P P+TT + +S P P P+ P ST AT+W
Sbjct: 200 PSPSTTKTKNSPPPPSPTPKPPPPTRASTTTTATTW 307
>AV411852
Length = 430
Score = 30.8 bits (68), Expect = 0.51
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = -2
Query: 1 MAQKSEDEPKPATTTSSSSTPNPVPSSVEPNMLPKSTM 38
M+ S P A+ +SSS+TP P+ S+ NM P+ T+
Sbjct: 345 MSSSSPQSPSTASYSSSSATPRPILSNAPSNM-PRMTL 235
>TC8461 homologue to UP|AAQ08194 (AAQ08194) Eukaryotic translation
initiation factor 5A isoform IV, complete
Length = 796
Score = 30.4 bits (67), Expect = 0.67
Identities = 16/46 (34%), Positives = 23/46 (49%), Gaps = 3/46 (6%)
Frame = +3
Query: 9 PKPATTTSSSSTPNPVPSSVEPNM---LPKSTMIPATSWFTPKRLL 51
P P T S+ S+P P P +P + +P + +TS P RLL
Sbjct: 78 PPPCLTRSTISSPRPTPEPPKPTLNKPVPSAKTATSTSRTAPARLL 215
>BP042407
Length = 464
Score = 30.4 bits (67), Expect = 0.67
Identities = 15/41 (36%), Positives = 21/41 (50%)
Frame = +3
Query: 6 EDEPKPATTTSSSSTPNPVPSSVEPNMLPKSTMIPATSWFT 46
++ P+P TS SS P P PSS+ P +T+ W T
Sbjct: 120 QNHPRPNPLTSHSSAPPPSPSSLTLPPPPPATLNNVPRWST 242
>TC12375 weakly similar to GB|AAA59989.1|189479|HUMP53T p53 cellular tumor
antigen {Homo sapiens;} , partial (6%)
Length = 468
Score = 30.0 bits (66), Expect = 0.88
Identities = 23/67 (34%), Positives = 29/67 (42%), Gaps = 15/67 (22%)
Frame = +1
Query: 10 KPATTTSSSSTPNPVPSSVEPNMLPKSTMI---------------PATSWFTPKRLLAIF 54
KPA T S +TP P PS LP+S M+ A S+ T RLL
Sbjct: 175 KPAPTKPSPATPAPAPSKPLVPALPQSPMVNPDSSGNQDVVKILRKAKSFNTLIRLLKTT 354
Query: 55 CVINMLN 61
+IN +N
Sbjct: 355 QIINQVN 375
>TC9027 weakly similar to UP|AAQ82447 (AAQ82447) SufB, partial (51%)
Length = 1016
Score = 30.0 bits (66), Expect = 0.88
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +2
Query: 4 KSEDEPKPATTT--SSSSTPNPVPSSVEPNMLPKSTMIPATSWFT 46
++ P PATTT SS S P P+P P KS AT+ T
Sbjct: 134 QTSQSPPPATTTNPSSESAPTPLPPPHPPPPTTKSARSSATATTT 268
>BI417637
Length = 513
Score = 28.9 bits (63), Expect = 2.0
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 8 EPKPATTTSSSSTPNPVPSSVEPNMLPKSTMIPAT 42
+P PA +SS+ P P++ P LP + PAT
Sbjct: 163 DPTPAPASSSAVATAPSPAATPPTSLPSALGKPAT 267
>TC17328 weakly similar to UP|Q9FGH3 (Q9FGH3) Dihydroflavonol
4-reductase-like (Cinnamoyl-CoA reductase-like
protein), partial (21%)
Length = 479
Score = 28.9 bits (63), Expect = 2.0
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 9/50 (18%)
Frame = +1
Query: 9 PKPATTTSSSSTPNPVPSSVE---------PNMLPKSTMIPATSWFTPKR 49
P P TSS ST P+P+S P+ P +T +++W P R
Sbjct: 25 PPPTPPTSSPSTRKPIPASPSSPPTSSTPPPSPAPSTTAPASSTWPPPAR 174
>TC8347 UP|ATPH_LOTJA (P12231) ATP synthase C chain (Lipid-binding
protein) (Subunit III) , complete
Length = 1267
Score = 28.5 bits (62), Expect = 2.6
Identities = 10/49 (20%), Positives = 27/49 (54%)
Frame = +3
Query: 256 KELLSDKVFVVNVLGYIAYNFVIGAYSYWGPKAGYSIYNMTNADMIFGG 304
K+ + K+ ++ +G+I Y+F + Y Y+ P + ++ + +++ G
Sbjct: 738 KKNIKRKIHIIFPVGFICYSFFLKFYYYFNPTIIFFLFEQEHKEILI*G 884
>TC17733 similar to UP|Q7XA63 (Q7XA63) At5g19860, partial (63%)
Length = 711
Score = 28.5 bits (62), Expect = 2.6
Identities = 18/54 (33%), Positives = 25/54 (45%), Gaps = 13/54 (24%)
Frame = +2
Query: 9 PKPATTTSSSSTPNPV-------PSSVEPNMLPKSTMIP------ATSWFTPKR 49
PK TTSS ST +P P + P S++ P +T+WFT +R
Sbjct: 158 PKKRPTTSSPSTASPAASYRTPSPGTPSPTTADSSSIWPRRATSSSTTWFTTRR 319
>AV414649
Length = 297
Score = 28.5 bits (62), Expect = 2.6
Identities = 22/79 (27%), Positives = 33/79 (40%), Gaps = 10/79 (12%)
Frame = +1
Query: 5 SEDEPKPATTTSSSSTPN----------PVPSSVEPNMLPKSTMIPATSWFTPKRLLAIF 54
S P PATTT +SST P+P+S P+ +T PA +R +
Sbjct: 10 SPPSPPPATTTLTSSTST*PTPLSPSAPPIPTSPNPSSSAAATPSPAADASPERRRSSKT 189
Query: 55 CVINMLNYLDRGAIASNGV 73
+ L+ L S+G+
Sbjct: 190LSLRTLSLLPYQIPESSGI 246
>TC16289 weakly similar to GB|AAP13385.1|30023704|BT006277 At3g56360
{Arabidopsis thaliana;}, partial (25%)
Length = 527
Score = 28.1 bits (61), Expect = 3.3
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = -2
Query: 8 EPKPATTTSSS-STPNPVPSSVEPNMLPKSTMIP 40
EP+P T +SSS STP P P P + P P
Sbjct: 127 EPQPPTPSSSSPSTPPPPPHPTPPRI*PPPASAP 26
>TC18087 similar to UP|Q9LF46 (Q9LF46) 2-hydroxyphytanoyl-CoA lyase-like
protein, partial (30%)
Length = 571
Score = 28.1 bits (61), Expect = 3.3
Identities = 19/55 (34%), Positives = 27/55 (48%), Gaps = 12/55 (21%)
Frame = +2
Query: 5 SEDEPKPATTTSSSSTPNPVPSSVEPNMLPKSTM---IPA---------TSWFTP 47
SE P+TT+S +TP P+ +++ P P ST +PA T W TP
Sbjct: 161 SESASSPSTTSSPLATPPPLTATLPP--APASTSLFPVPAASTASLASPTPWLTP 319
>TC14463 similar to UP|Q9SLF1 (Q9SLF1) Nodulin-like protein
(At2g16660/T24I21.7), partial (40%)
Length = 1122
Score = 28.1 bits (61), Expect = 3.3
Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = +2
Query: 5 SEDEPKPATTTSSSSTPNPV-PSSVEPN 31
S P PATTT S +TP P PS P+
Sbjct: 170 SGSNPSPATTTPSPTTPTPSNPSCTSPS 253
>TC9870 weakly similar to UP|NO16_MEDTR (P93328) Early nodulin 16 precursor
(N-16), partial (31%)
Length = 581
Score = 27.7 bits (60), Expect = 4.4
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +1
Query: 9 PKPATTTSSSSTPNPVPSS 27
P PA ++SSS TP+P P+S
Sbjct: 271 PSPAPSSSSSPTPSPSPAS 327
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.324 0.139 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,251,020
Number of Sequences: 28460
Number of extensions: 143246
Number of successful extensions: 1728
Number of sequences better than 10.0: 81
Number of HSP's better than 10.0 without gapping: 1601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1701
length of query: 484
length of database: 4,897,600
effective HSP length: 94
effective length of query: 390
effective length of database: 2,222,360
effective search space: 866720400
effective search space used: 866720400
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 57 (26.6 bits)
Medicago: description of AC124214.6