BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC124214.2 + phase: 0
(402 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CB829368 311 9e-86
AV775915 89 2e-18
TC16575 homologue to GB|AAB61094.1|2194119|F20P5 F20P5.5 {Arabid... 89 2e-18
AV777278 79 2e-15
TC15369 similar to UP|Q9FFZ5 (Q9FFZ5) Gb|AAF00669.1, partial (17%) 74 3e-14
BP051681 67 7e-12
BP049680 67 7e-12
AV423696 64 3e-11
TC13763 similar to UP|O80855 (O80855) At2g30900 protein, partial... 59 1e-09
TC11504 similar to UP|O82273 (O82273) At2g31110 protein, partial... 58 2e-09
AV421063 57 5e-09
BP048416 56 9e-09
BG662185 55 3e-08
TC10134 weakly similar to UP|O80872 (O80872) At2g30010 protein (... 52 2e-07
AV766612 50 5e-07
TC13650 similar to UP|Q9SSL4 (Q9SSL4) F3N23.34 protein, partial ... 50 5e-07
CB827623 49 1e-06
TC20057 similar to UP|O80872 (O80872) At2g30010 protein (At2g300... 46 1e-05
CB828327 46 1e-05
AI967462 44 5e-05
>CB829368
Length = 541
Score = 311 bits (798), Expect = 9e-86
Identities = 146/180 (81%), Positives = 158/180 (87%), Gaps = 1/180 (0%)
Frame = +2
Query: 7 SHLFPFLIILTLASLYYFSSFISLNTLSSS-SSTSPSLTISTCNLFKGTWVFDPNHTPLY 65
SHL P LI LTL SLY+ SS +SL+T SSS SS+S S +IS CNL++G WVFDP+ TPLY
Sbjct: 2 SHLIPSLIFLTLVSLYFLSSLLSLHTPSSSYSSSSSSTSISKCNLYRGNWVFDPDRTPLY 181
Query: 66 DDTCPFHRNAWNCIRNQRQNLSLINSWKWVPRGCDMNRIDPFRFLGSMRNKNVGIVGDSL 125
DDTCPFHRNAWNCIRNQRQNLS INSWKWVPRGCD+ RIDPFRFLG MRNKNVG VGDSL
Sbjct: 182 DDTCPFHRNAWNCIRNQRQNLSFINSWKWVPRGCDLPRIDPFRFLGLMRNKNVGFVGDSL 361
Query: 126 NENLLVSFLCTLRVADGGARKWKKKGAWRGAYFPKFNVTVAYHRAVLLSKYKWQPKQSES 185
NEN L SFLC LRVAD GARKWKKKGAWRGAYFPKFNVTV YHRAVLLSKY+WQPK+SE+
Sbjct: 362 NENFLASFLCILRVADKGARKWKKKGAWRGAYFPKFNVTVGYHRAVLLSKYQWQPKKSEA 541
>AV775915
Length = 484
Score = 88.6 bits (218), Expect = 2e-18
Identities = 40/43 (93%), Positives = 40/43 (93%), Gaps = 1/43 (2%)
Frame = -2
Query: 357 IWLGRKDAVAIWGQDCMHWCLPGVPDTWVDILSQLIID-GFGR 398
IWLGRKDAVAIWGQDCMHWCLPGVPDTWVDILSQLI D FGR
Sbjct: 483 IWLGRKDAVAIWGQDCMHWCLPGVPDTWVDILSQLIHDHRFGR 355
>TC16575 homologue to GB|AAB61094.1|2194119|F20P5 F20P5.5 {Arabidopsis
thaliana;}, partial (8%)
Length = 868
Score = 88.6 bits (218), Expect = 2e-18
Identities = 62/227 (27%), Positives = 94/227 (41%), Gaps = 15/227 (6%)
Frame = +2
Query: 181 KQSESGMQDGSEGIHRVDVDVPADEWAKIAGFYDVLLFNTGHWWNHDKFPKEKPLVFYKA 240
K+S+S G++ + +D P ++W +D ++ N GHW+ + +VFY+
Sbjct: 2 KESDSN-GPSQTGLYNLYLDEPDEKWITQIEDFDYVILNGGHWFT-------RSMVFYEQ 157
Query: 241 GQPI---------VPPLEMLDGLKVVLGNMITYIEKEFPRNTLKFWRLQSPRHFYGGDWN 291
+ I VP L M G + I + F R SP HF G WN
Sbjct: 158 QKIIGCHYCLLENVPDLTMYYGYRRAFRTAFKAINSLKNFKGITFLRTFSPSHFENGIWN 337
Query: 292 QNGSCLFNKPLEENELDLWFEPRNNGVNKEARQMNFVIEKVLQ------GTNIHVVDFTH 345
+ G+C+ KP NE L G+N E + K+ + G + D
Sbjct: 338 EGGNCVRTKPFRSNETQL------EGLNLEYYMIQLEEFKIAEKEARKKGLRYRLFDTMQ 499
Query: 346 LSEFRADAHPAIWLGRKDAVAIWGQDCMHWCLPGVPDTWVDILSQLI 392
+ R D HP+ + + DC+HWCLPG DTW D L L+
Sbjct: 500 ATLLRPDGHPSKYGHWPNENVTLYNDCVHWCLPGPIDTWSDFLLDLL 640
>AV777278
Length = 582
Score = 78.6 bits (192), Expect = 2e-15
Identities = 48/135 (35%), Positives = 75/135 (55%), Gaps = 2/135 (1%)
Frame = +3
Query: 5 LPSHLFPFLIILTLASLYYFSSFI-SLNTLSSSSSTSPSLTISTCNLFKGTWVFDPNHTP 63
LP+ LF FL + L S + F+ S +T +++++ S L CN F+G WV+D ++ P
Sbjct: 69 LPTTLFLFLSLFALFSHQTEAEFLNSFSTTNATTTISRKLAGGRCNWFRGKWVYDRSY-P 245
Query: 64 LYD-DTCPFHRNAWNCIRNQRQNLSLINSWKWVPRGCDMNRIDPFRFLGSMRNKNVGIVG 122
LY+ TCPF +NC + R + +L ++W P C + R + + FL RNK + VG
Sbjct: 246 LYNPSTCPFIDPQFNCQKYGRPD-TLYQQYRWQPFTCPLPRFNAWDFLLKYRNKKIMFVG 422
Query: 123 DSLNENLLVSFLCTL 137
DSL+ N S C +
Sbjct: 423 DSLSLNQFNSLACMI 467
>TC15369 similar to UP|Q9FFZ5 (Q9FFZ5) Gb|AAF00669.1, partial (17%)
Length = 1365
Score = 74.3 bits (181), Expect = 3e-14
Identities = 43/116 (37%), Positives = 61/116 (52%), Gaps = 2/116 (1%)
Frame = -3
Query: 288 GDWNQNGSCLFNKPLEENELDLWFEPRNNGVNKEARQMNFVIEKVLQGT-NIHVVDFTHL 346
G WN+ G C K E++ L EP N + V+E++ G+ +H ++ T+L
Sbjct: 964 GTWNEGGECDMEKEPEKDHTKLATEPYYNTFISD------VVEQMQYGSWKVHFLNITYL 803
Query: 347 SEFRADAHPAIWLGRKDAVAIWGQDCMHWCLPGVPDTWVDIL-SQLIIDGFGRTSK 401
SE R D HP+ + QDC HWCLPGVPDTW ++L +QL+ FG K
Sbjct: 802 SELRKDGHPSKYR-EPGTPPDAPQDCSHWCLPGVPDTWNELLYAQLLSKKFGTDDK 638
>BP051681
Length = 586
Score = 66.6 bits (161), Expect = 7e-12
Identities = 38/112 (33%), Positives = 57/112 (49%), Gaps = 2/112 (1%)
Frame = -3
Query: 284 HFYGGDWNQ-NGSCLFN-KPLEENELDLWFEPRNNGVNKEARQMNFVIEKVLQGTNIHVV 341
+F G +WNQ SC +PL + P VNK + M ++++
Sbjct: 518 NFRGQEWNQPKKSCSGQIEPLSGSSYPAGLPPPTTIVNKVLKNMK---------KPVYLL 366
Query: 342 DFTHLSEFRADAHPAIWLGRKDAVAIWGQDCMHWCLPGVPDTWVDILSQLII 393
D T LS+ R DAHP+ + G + G DC HWCLPG+PDTW ++L+ ++
Sbjct: 365 DITLLSQLRKDAHPSAYGGNQG-----GNDCSHWCLPGLPDTWNELLNAALM 225
>BP049680
Length = 474
Score = 66.6 bits (161), Expect = 7e-12
Identities = 31/94 (32%), Positives = 55/94 (57%), Gaps = 1/94 (1%)
Frame = +1
Query: 48 CNLFKGTWVFDPNHTPLYD-DTCPFHRNAWNCIRNQRQNLSLINSWKWVPRGCDMNRIDP 106
CN+++G+WV+D ++ P+YD +CP + ++C+ R + + ++W P GCD+ R D
Sbjct: 118 CNIYEGSWVYDESY-PIYDYSSCPHIESQFDCLGRGRPDRKYLK-YRWQPSGCDLPRFDG 291
Query: 107 FRFLGSMRNKNVGIVGDSLNENLLVSFLCTLRVA 140
+FL + K + +GDS++ N S C L A
Sbjct: 292 KKFLTKYKGKQLMFIGDSVSVNQWQSLKCMLHSA 393
>AV423696
Length = 427
Score = 64.3 bits (155), Expect = 3e-11
Identities = 50/149 (33%), Positives = 72/149 (47%), Gaps = 2/149 (1%)
Frame = +1
Query: 73 RNAWNCIRNQRQNLSLINSWKWVPRGCDMNRIDPFRFLGSMRNKNVGIVGDSLNENLLVS 132
+ + NCI N R + + W+W P C++ R +P FL +RNK+V VGDSL N L S
Sbjct: 19 KESHNCITNGRPDSDFLY-WRWKPNECNIPRFEPHTFLQLIRNKHVAFVGDSLARNQLES 195
Query: 133 FLCTLRVADGGARKWKKKGAWRGAYFPKFNVTVAYHRAVLLSKYKWQPKQSESGMQDGSE 192
LC L A + KGA R +FP N T LS Y W P + G +
Sbjct: 196 LLCMLSPA-STLKLLHHKGA-RWWHFPSHNAT--------LSSY-WSPFLVQ-GAERLKS 339
Query: 193 GIHR--VDVDVPADEWAKIAGFYDVLLFN 219
G H + +D ++WAK D+++ +
Sbjct: 340 GPHHNTMYLDHVNEKWAKDMDKMDLIVLS 426
>TC13763 similar to UP|O80855 (O80855) At2g30900 protein, partial (13%)
Length = 538
Score = 59.3 bits (142), Expect = 1e-09
Identities = 29/72 (40%), Positives = 45/72 (62%)
Frame = +3
Query: 317 GVNKEARQMNFVIEKVLQGTNIHVVDFTHLSEFRADAHPAIWLGRKDAVAIWGQDCMHWC 376
G+ + A +N V++K+ ++++D T LS+ R DAHP+ + G + G DC HWC
Sbjct: 54 GLPQAANILNSVLKKM--NNPVYLLDITLLSQLRKDAHPSTY-GEDHS----GNDCSHWC 212
Query: 377 LPGVPDTWVDIL 388
LPG+PDTW +L
Sbjct: 213 LPGLPDTWNQLL 248
>TC11504 similar to UP|O82273 (O82273) At2g31110 protein, partial (40%)
Length = 579
Score = 58.2 bits (139), Expect = 2e-09
Identities = 27/64 (42%), Positives = 40/64 (62%), Gaps = 2/64 (3%)
Frame = +3
Query: 328 VIEKVLQGTN--IHVVDFTHLSEFRADAHPAIWLGRKDAVAIWGQDCMHWCLPGVPDTWV 385
V+ KVL + ++ +D T LS++R DAHP + G + DC HWCLPG+PDTW
Sbjct: 48 VVNKVLTRMSKPVYFLDVTTLSQYRKDAHPEGYSG------VMATDCSHWCLPGLPDTWN 209
Query: 386 DILS 389
++L+
Sbjct: 210 ELLA 221
>AV421063
Length = 399
Score = 57.0 bits (136), Expect = 5e-09
Identities = 28/62 (45%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Frame = +2
Query: 328 VIEKVLQGTNIHVVDFTHLSEFRADAHPAIWLGRKDAVAIWG-QDCMHWCLPGVPDTWVD 386
V ++GT + ++D T LS+ R + H + R A G QDC+HWCLPGVPDTW +
Sbjct: 59 VAANAVKGTGVKLLDITGLSQVRDEGH----ISRFSMTAKPGVQDCLHWCLPGVPDTWNE 226
Query: 387 IL 388
IL
Sbjct: 227 IL 232
>BP048416
Length = 509
Score = 56.2 bits (134), Expect = 9e-09
Identities = 36/126 (28%), Positives = 60/126 (47%), Gaps = 11/126 (8%)
Frame = -1
Query: 278 RLQSPRHFYGGDWNQNGSCLFNKPLEENELDLWFEPRNNGVNKEARQMNFVIEKVLQGT- 336
R SP HF G DW++ G+C ++P + E L G++ E R++ + +G
Sbjct: 494 RTFSPSHFKG-DWDKGGTCAKSEPYRKGEKXL------EGMDAEIRRIEMEEVESAKGKA 336
Query: 337 -----NIHVVDFTHLSEFRADAHPAIWLG----RKDAVAIWGQ-DCMHWCLPGVPDTWVD 386
+ ++D T L+ R D HP ++ V Q DC+HWC+PG DTW +
Sbjct: 335 KQLGFRLELMDVTELALLRPDGHPGAYMKPFPFANGVVQEHVQSDCVHWCVPGPIDTWNE 156
Query: 387 ILSQLI 392
+++
Sbjct: 155 FFLEIM 138
>BG662185
Length = 383
Score = 54.7 bits (130), Expect = 3e-08
Identities = 25/64 (39%), Positives = 38/64 (59%), Gaps = 8/64 (12%)
Frame = +1
Query: 338 IHVVDFTHLSEFRADAHPAIWLGRKDAVAIWGQ--------DCMHWCLPGVPDTWVDILS 389
++ ++ T LSEFR DAH +++ R+ + Q DC+HWCLPG+PDTW + +
Sbjct: 118 VYFINITTLSEFRKDAHTSVYTIRQGKMLTPEQQADPATYADCIHWCLPGLPDTWNEFIY 297
Query: 390 QLII 393
II
Sbjct: 298 TRII 309
>TC10134 weakly similar to UP|O80872 (O80872) At2g30010 protein
(At2g30010/F23F1.7), partial (12%)
Length = 555
Score = 51.6 bits (122), Expect = 2e-07
Identities = 23/59 (38%), Positives = 34/59 (56%), Gaps = 7/59 (11%)
Frame = +1
Query: 338 IHVVDFTHLSEFRADAHPAIWL-------GRKDAVAIWGQDCMHWCLPGVPDTWVDILS 389
+++ D T L+ FR D HP+++ +K + DC HWCLPGVPD W ++LS
Sbjct: 139 VYLQDVTTLTAFRRDGHPSVYRKPISIEKSQKPGTGL-SSDCSHWCLPGVPDIWNEMLS 312
>AV766612
Length = 286
Score = 50.4 bits (119), Expect = 5e-07
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Frame = +2
Query: 214 DVLLFNTGHWWNHDKFPKEKPLVFYKAGQPIVPPLEMLDGLKVVLGNMITYIEKEFPRN- 272
DVL+ N GHW N++K K +++ G + L D + ++ +I E N
Sbjct: 17 DVLILNAGHWXNYEK--TLKLCCYFQLGVEVKINLTTEDAFRKSFQTVVDWIASEVNTNK 190
Query: 273 TLKFWRLQSPRHFYGGDWNQNGSC 296
T +R +P HF GG+WN G C
Sbjct: 191 TYVLFRTYAPVHFRGGNWNTGGGC 262
>TC13650 similar to UP|Q9SSL4 (Q9SSL4) F3N23.34 protein, partial (8%)
Length = 547
Score = 50.4 bits (119), Expect = 5e-07
Identities = 26/77 (33%), Positives = 42/77 (53%), Gaps = 13/77 (16%)
Frame = +2
Query: 329 IEKVLQG--TNIHVVDFTHLSEFRADAHPAIW-----------LGRKDAVAIWGQDCMHW 375
+EK+L + + V++ T +SE+R D HP+I+ L + + DC+ W
Sbjct: 83 VEKILSSLKSKVSVLNITQMSEYRKDGHPSIFRQFWEPLRPEPLSNPPSYS----DCIPW 250
Query: 376 CLPGVPDTWVDILSQLI 392
CLPGVPD W ++L L+
Sbjct: 251 CLPGVPDVWNELLFPLL 301
>CB827623
Length = 419
Score = 48.9 bits (115), Expect = 1e-06
Identities = 27/85 (31%), Positives = 43/85 (49%)
Frame = +2
Query: 26 SFISLNTLSSSSSTSPSLTISTCNLFKGTWVFDPNHTPLYDDTCPFHRNAWNCIRNQRQN 85
SF LN S++ PS ++ C++F G WV +P + TC NC++ R +
Sbjct: 179 SFDDLN----ESASLPSTSVKKCDIFTGEWVPNPKAPYYTNKTCWAIHEHQNCMKYGRPD 346
Query: 86 LSLINSWKWVPRGCDMNRIDPFRFL 110
S W+W P G ++ +PF+FL
Sbjct: 347 -SEFMKWRWKPNGXELPIFNPFQFL 418
>TC20057 similar to UP|O80872 (O80872) At2g30010 protein
(At2g30010/F23F1.7), partial (15%)
Length = 484
Score = 46.2 bits (108), Expect = 1e-05
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Frame = +1
Query: 339 HVVDFTHLSEFRADAHPAIWLGRKDAVAIWG---QDCMHWCLPGVPDTWVDI 387
+++D T LS R DAHP+++ G DC WCLPG+PD W ++
Sbjct: 193 YLMDITMLSALRKDAHPSVYSGDLSPAPRANPDYSDCSPWCLPGLPDAWNEL 348
>CB828327
Length = 568
Score = 45.8 bits (107), Expect = 1e-05
Identities = 31/115 (26%), Positives = 52/115 (44%), Gaps = 10/115 (8%)
Frame = +1
Query: 288 GDWNQNGSCLFNKP------LEENELDLWFEPRNNGVNKEARQMNFVIEKVLQGTNIHVV 341
G W++ G+C P L +N+ ++ R G+ +E ++ + + I +
Sbjct: 4 GSWDKGGTCSRLTPYRGKRKLGKNDAEI----RRIGL-EEMQKAKDKAKYFGRYFKIKAL 168
Query: 342 DFTHLSEFRADAHPAIWLG----RKDAVAIWGQDCMHWCLPGVPDTWVDILSQLI 392
D T LS R D HP ++ K + DC HWCLP DTW +I +++
Sbjct: 169 DVTKLSLMRPDGHPGAYVSPNAFSKGVTKVVHNDCTHWCLP*PIDTWNEIFMEMV 333
>AI967462
Length = 464
Score = 43.9 bits (102), Expect = 5e-05
Identities = 32/121 (26%), Positives = 53/121 (43%), Gaps = 3/121 (2%)
Frame = +1
Query: 203 ADEWAKIAGFYDVLLFNTGHWWNHDKFPKEKPLVFYKAGQPIVPPLEMLDGLKVVLGNMI 262
A+ W + D+L+FN+ HWW H + + + G +V ++ L+ L
Sbjct: 112 ANAWTDL----DMLIFNSWHWWTHT--GDSQGWDYIRNGSNLVKDMDRLEAFYQGLTTWA 273
Query: 263 TYIEKEF-PRNTLKFWRLQSPRHFYGGDWNQ-NGSCLFN-KPLEENELDLWFEPRNNGVN 319
+++ P T F++ SP H+ G +WNQ SC +PL + P VN
Sbjct: 274 RWVDLNVDPTKTKVFFQGISPTHYQGQEWNQPKKSCSGQIEPLSGSSYPAGLPPPTTIVN 453
Query: 320 K 320
K
Sbjct: 454 K 456
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.322 0.139 0.464
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,283,013
Number of Sequences: 28460
Number of extensions: 159500
Number of successful extensions: 1056
Number of sequences better than 10.0: 66
Number of HSP's better than 10.0 without gapping: 1030
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1038
length of query: 402
length of database: 4,897,600
effective HSP length: 92
effective length of query: 310
effective length of database: 2,279,280
effective search space: 706576800
effective search space used: 706576800
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)
Medicago: description of AC124214.2