TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC124214.11 + phase: 0 /pseudo
         (240 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP068691                                                               65  8e-12
TC8661 weakly similar to UP|O81348 (O81348) Symbiotic ammonium t...    65  8e-12
TC10885                                                                59  6e-10
BP039904                                                               56  6e-09
BP078908                                                               39  6e-04
TC12412 weakly similar to UP|O81348 (O81348) Symbiotic ammonium ...    37  0.004
BP076661                                                               30  0.48
TC8973 similar to PIR|A86477|A86477 protein F15O4.33 [imported] ...    26  5.3
BP059446                                                               26  6.9

>BP068691 
          Length = 500

 Score = 65.5 bits (158), Expect = 8e-12
 Identities = 30/60 (50%), Positives = 45/60 (75%)
 Frame = -1

Query: 168 LPEIEARFCDRNVLIRVHCEKIKGVVEKTIHKIEKLNLKVTNSSFMTFGSCALDITIIAQ 227
           LP +EAR  +++VL+R+HC+K KG++ K + +I+ L+L V NSS + FG   LDITI+AQ
Sbjct: 344 LPHLEARVSEKDVLLRLHCQKQKGLLLKILFEIQNLHLFVVNSSVLPFGDSILDITIVAQ 165


>TC8661 weakly similar to UP|O81348 (O81348) Symbiotic ammonium
           transporter, partial (34%)
          Length = 1007

 Score = 65.5 bits (158), Expect = 8e-12
 Identities = 30/60 (50%), Positives = 45/60 (75%)
 Frame = +1

Query: 168 LPEIEARFCDRNVLIRVHCEKIKGVVEKTIHKIEKLNLKVTNSSFMTFGSCALDITIIAQ 227
           LP +EAR  +++VL+R+HC+K KG++ K + +I+ L+L V NSS + FG   LDITI+AQ
Sbjct: 310 LPHVEARVSEKDVLLRLHCKKQKGLLLKILFEIQNLHLFVVNSSVLPFGDSILDITIVAQ 489


>TC10885 
          Length = 573

 Score = 59.3 bits (142), Expect = 6e-10
 Identities = 29/60 (48%), Positives = 38/60 (63%)
 Frame = +2

Query: 168 LPEIEARFCDRNVLIRVHCEKIKGVVEKTIHKIEKLNLKVTNSSFMTFGSCALDITIIAQ 227
           LPEI AR   + VLI +HCEK  G   K +  +E L+L V  SS + FG+ AL +T+IAQ
Sbjct: 137 LPEIAARALGKEVLIEIHCEKENGTELKILDHLENLHLSVNGSSVLPFGNSALSVTVIAQ 316


>BP039904 
          Length = 544

 Score = 55.8 bits (133), Expect = 6e-09
 Identities = 27/59 (45%), Positives = 38/59 (63%)
 Frame = -2

Query: 169 PEIEARFCDRNVLIRVHCEKIKGVVEKTIHKIEKLNLKVTNSSFMTFGSCALDITIIAQ 227
           P+++AR  +  VLI +HCE+  G+  K +  +E L L VT SS + FG+  L ITIIAQ
Sbjct: 462 PDVKARVLENEVLIVIHCERENGIELKILDLLENLRLCVTGSSVLPFGNSTLSITIIAQ 286


>BP078908 
          Length = 443

 Score = 39.3 bits (90), Expect = 6e-04
 Identities = 19/50 (38%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
 Frame = -1

Query: 179 NVLIRVHCEKIKGVVEKTIHKIEKLN-LKVTNSSFMTFGSCALDITIIAQ 227
           ++LI++HC+K  G     + ++EK + L V +SS + FG+   D+TIIA+
Sbjct: 440 DLLIKIHCDKQSGCAATILRELEKHDYLTVQSSSILPFGNNITDVTIIAK 291


>TC12412 weakly similar to UP|O81348 (O81348) Symbiotic ammonium
           transporter, partial (7%)
          Length = 654

 Score = 36.6 bits (83), Expect = 0.004
 Identities = 17/40 (42%), Positives = 25/40 (62%)
 Frame = +2

Query: 181 LIRVHCEKIKGVVEKTIHKIEKLNLKVTNSSFMTFGSCAL 220
           LIR+ CEK +GV+   + +I  LNL V N+  + FG+  L
Sbjct: 2   LIRIPCEKQEGVLMNILKEIHNLNLSVINAGTLLFGTSKL 121


>BP076661 
          Length = 532

 Score = 29.6 bits (65), Expect = 0.48
 Identities = 13/29 (44%), Positives = 21/29 (71%)
 Frame = -3

Query: 199 KIEKLNLKVTNSSFMTFGSCALDITIIAQ 227
           ++EK +L V ++S + FG+  LDITI+ Q
Sbjct: 515 ELEKHHLTVQSTSILPFGNNTLDITIVTQ 429


>TC8973 similar to PIR|A86477|A86477 protein F15O4.33 [imported] -
            Arabidopsis thaliana {Arabidopsis thaliana;}, partial
            (66%)
          Length = 1358

 Score = 26.2 bits (56), Expect = 5.3
 Identities = 10/18 (55%), Positives = 13/18 (71%)
 Frame = -2

Query: 49   TLHNTIHTFIQTSTLELQ 66
            TLHNT+HTF+  S +  Q
Sbjct: 1087 TLHNTLHTFLSFSIILFQ 1034


>BP059446 
          Length = 542

 Score = 25.8 bits (55), Expect = 6.9
 Identities = 17/65 (26%), Positives = 30/65 (46%)
 Frame = +2

Query: 176 CDRNVLIRVHCEKIKGVVEKTIHKIEKLNLKVTNSSFMTFGSCALDITIIAQPTLSFYVF 235
           C      R++ E  + ++ K + +I+    +      MTF    LD T+  QP  SF   
Sbjct: 230 CINFSFFRINSESQEELLTKLLPRIDSAFRR------MTFKHALLDFTMC*QPRNSFQWV 391

Query: 236 HLRTF 240
           HL+++
Sbjct: 392 HLQSY 406


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.364    0.163    0.551 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,095,538
Number of Sequences: 28460
Number of extensions: 54909
Number of successful extensions: 784
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of query: 240
length of database: 4,897,600
effective HSP length: 88
effective length of query: 152
effective length of database: 2,393,120
effective search space: 363754240
effective search space used: 363754240
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.5 bits)
S2: 54 (25.4 bits)