TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC123975.11 - phase: 0 
         (206 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

CB829390                                                              273  2e-74
BP046905                                                               28  0.87
TC9163 similar to UP|Q9AT45 (Q9AT45) ADP-glucose pyrophosphoryla...    28  1.1
TC19630                                                                25  7.3
TC19192 weakly similar to UP|PSD6_ORYSA (Q8W425) 26S proteasome ...    25  7.3
TC19330 similar to UP|Q96258 (Q96258) AR791, partial (11%)             25  7.3
AV780257                                                               25  9.6
TC14617 similar to UP|Q42361 (Q42361) Transcribed sequence 1087 ...    25  9.6

>CB829390 
          Length = 510

 Score =  273 bits (697), Expect = 2e-74
 Identities = 133/147 (90%), Positives = 143/147 (96%)
 Frame = +1

Query: 60  KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVYRAILVCQTSLTPFAKTCVSEIAS 119
           KKD PSDQIYVFFP+E KVGVKTMKTYTNRMNSENV+RAILVCQ++LTPFAKTC+SE++S
Sbjct: 1   KKDGPSDQIYVFFPDEPKVGVKTMKTYTNRMNSENVFRAILVCQSNLTPFAKTCISEMSS 180

Query: 120 KFHLEVFQEAELLVNIKEHVLVPEHQILNDTEKKTLLERYTVKETQLPRIQVTDPVARYY 179
           K  LEVFQEAELLVNIKEHVLVPEHQILN+TEKKTLLERYTVKETQLPRIQ+TDPVARYY
Sbjct: 181 KXQLEVFQEAELLVNIKEHVLVPEHQILNETEKKTLLERYTVKETQLPRIQITDPVARYY 360

Query: 180 GLKRGQVVKIIRPSETAGRYVTYRFVV 206
           GLKRGQVVKIIRPSETAGRY+TYRFVV
Sbjct: 361 GLKRGQVVKIIRPSETAGRYITYRFVV 441


>BP046905 
          Length = 538

 Score = 28.5 bits (62), Expect = 0.87
 Identities = 12/39 (30%), Positives = 20/39 (50%)
 Frame = +1

Query: 72  FPEEAKVGVKTMKTYTNRMNSENVYRAILVCQTSLTPFA 110
           FP+   +    + +  +  NSE  Y +  +C+ S TPFA
Sbjct: 394 FPDNCLLMYSGLSSIISGKNSEKSYLSSFICKVSATPFA 510


>TC9163 similar to UP|Q9AT45 (Q9AT45) ADP-glucose pyrophosphorylase large
           subunit  (Glucose-1-phosphate adenylyltransferase)
           (ADP-glucose synthase) , partial (5%)
          Length = 663

 Score = 28.1 bits (61), Expect = 1.1
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
 Frame = -2

Query: 116 EIASKF---HLEVFQEAELLVNIKEHVLVPEHQ 145
           ++ SKF   HLE+    +  +N+K HV VP H+
Sbjct: 662 QVRSKFKFKHLEIDDTIKHYINVKTHVTVPIHK 564


>TC19630 
          Length = 432

 Score = 25.4 bits (54), Expect = 7.3
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 48  NMKREDLVINKTKKDKPSDQIYVFFP 73
           N K E L+  K +K KP+  +  FFP
Sbjct: 362 NQKMESLLFGKAEKTKPNVVLCWFFP 285


>TC19192 weakly similar to UP|PSD6_ORYSA (Q8W425) 26S proteasome non-ATPase
           regulatory subunit 6 (26S proteasome regulatory particle
           non-ATPase subunit 7) (OsRPN7), partial (34%)
          Length = 433

 Score = 25.4 bits (54), Expect = 7.3
 Identities = 15/37 (40%), Positives = 19/37 (50%)
 Frame = -1

Query: 102 CQTSLTPFAKTCVSEIASKFHLEVFQEAELLVNIKEH 138
           CQ SLT F  T V    S   +++F   EL+VN   H
Sbjct: 340 CQVSLTNFTLTEVFLSISNLFVDLF---ELIVNFSSH 239


>TC19330 similar to UP|Q96258 (Q96258) AR791, partial (11%)
          Length = 507

 Score = 25.4 bits (54), Expect = 7.3
 Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
 Frame = +2

Query: 110 AKTCVSEIASKFHLEVFQEAELLVNIKEHVL----VPEHQILNDTEKKTLLERYTVKETQ 165
           AKT V  +  K   E  Q  E ++N+K+ V     +      +D E +T L R    E +
Sbjct: 8   AKTKVKFLKRKIRHEAEQNKEQIINLKQRVSKLQDLESQATASDQEIETKLRRLKDLEAE 187

Query: 166 LPRIQVTD 173
             +++ T+
Sbjct: 188 AEQLRKTN 211


>AV780257 
          Length = 254

 Score = 25.0 bits (53), Expect = 9.6
 Identities = 20/63 (31%), Positives = 31/63 (48%)
 Frame = +1

Query: 6   EEITRLYRIRKTVMQMLKDRNYLVGDFELNMSKHDFKDKYGENMKREDLVINKTKKDKPS 65
           E+I  LY I   V     D   L G+ E N+ K+D++   G  M R   + +K +  KPS
Sbjct: 46  EKIETLYYICIIVTNHGGDYLVLYGN*E-NIIKYDYQ*LMGLRMHRNHNLDDKQQPSKPS 222

Query: 66  DQI 68
           + +
Sbjct: 223 NML 231


>TC14617 similar to UP|Q42361 (Q42361) Transcribed sequence 1087 protein
           (Fragment), partial (31%)
          Length = 637

 Score = 25.0 bits (53), Expect = 9.6
 Identities = 16/48 (33%), Positives = 25/48 (51%)
 Frame = -3

Query: 145 QILNDTEKKTLLERYTVKETQLPRIQVTDPVARYYGLKRGQVVKIIRP 192
           Q+L   ++  +LE YT K T        + ++  +GL +G V K IRP
Sbjct: 596 QLLTYNKRI*VLEYYTWKST--------NAISNRFGLSKGFVKKSIRP 477


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.320    0.135    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,553,581
Number of Sequences: 28460
Number of extensions: 28370
Number of successful extensions: 154
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of query: 206
length of database: 4,897,600
effective HSP length: 86
effective length of query: 120
effective length of database: 2,450,040
effective search space: 294004800
effective search space used: 294004800
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)