BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC123898.6 - phase: 0 /pseudo
(478 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC9423 similar to UP|Q8S8Z8 (Q8S8Z8) Syringolide-induced protein... 38 0.004
AV415922 37 0.005
AW720113 36 0.012
TC18379 similar to UP|Q9SBM1 (Q9SBM1) Hydroxyproline-rich glycop... 35 0.027
BP067133 35 0.035
TC11095 similar to PIR|T05112|T05112 splicing factor 9G8-like SR... 34 0.046
AV418552 34 0.060
AI967515 34 0.060
AW719349 33 0.078
TC20112 weakly similar to UP|Q9SBM1 (Q9SBM1) Hydroxyproline-rich... 33 0.10
BP043927 32 0.30
TC15523 similar to UP|GRPA_MAIZE (P10979) Glycine-rich RNA-bindi... 32 0.30
TC16018 UP|Q8MZB8 (Q8MZB8) AT15479p (CG31542-PA), partial (7%) 31 0.39
TC8182 weakly similar to UP|Q93VA8 (Q93VA8) At1g76010/T4O12_22, ... 31 0.39
TC15164 similar to UP|Q9ZTK7 (Q9ZTK7) CONSTANS-like protein 2, p... 31 0.39
TC9652 weakly similar to UP|AAP46157 (AAP46157) Latex abundant p... 31 0.51
BP036717 31 0.51
TC13578 similar to UP|Q7RZL8 (Q7RZL8) Predicted protein, partial... 31 0.51
AV412439 26 0.52
TC16065 weakly similar to UP|Q9SBM1 (Q9SBM1) Hydroxyproline-rich... 30 0.66
>TC9423 similar to UP|Q8S8Z8 (Q8S8Z8) Syringolide-induced protein B13-1-9,
partial (53%)
Length = 969
Score = 37.7 bits (86), Expect = 0.004
Identities = 20/37 (54%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Frame = +2
Query: 33 TKAPPTTTTETTTTATTTETSTT-ETTTTKTTTTPTT 68
T PPTTTT TTT+ TT +ST+ T TK++T+ TT
Sbjct: 299 TTPPPTTTTATTTSFATTLSSTSPPATRTKSSTSTTT 409
Score = 27.7 bits (60), Expect = 4.3
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +2
Query: 37 PTTTTETTTTATTTETSTTETTTTKTTTTP 66
P + + TT TTT +TT TT ++T+P
Sbjct: 281 PNSHSSTTPPPTTTTATTTSFATTLSSTSP 370
>AV415922
Length = 422
Score = 37.4 bits (85), Expect = 0.005
Identities = 17/36 (47%), Positives = 24/36 (66%)
Frame = +2
Query: 27 LCRLKLTKAPPTTTTETTTTATTTETSTTETTTTKT 62
+ R+++ + P +T TT T TTT T+TT TTTT T
Sbjct: 128 MVRIQIPNSIPRESTPTTMTTTTTTTTTTTTTTTTT 235
>AW720113
Length = 512
Score = 36.2 bits (82), Expect = 0.012
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = +3
Query: 34 KAPPTTTTETTTTATTTETSTTETTTTKTTTTP 66
+ PP + +TT ATTT T+TT TT T T P
Sbjct: 87 RIPPFSARSSTTAATTTTTTTTTTTATATAAIP 185
Score = 28.1 bits (61), Expect = 3.3
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +3
Query: 29 RLKLTKAPPTTTTETTTTATTTETSTTET 57
R+ A +TT TTTT TTT T+ T T
Sbjct: 87 RIPPFSARSSTTAATTTTTTTTTTTATAT 173
Score = 26.9 bits (58), Expect = 7.3
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +3
Query: 49 TTETSTTETTTTKTTTTPTT 68
+ +STT TTT TTTT TT
Sbjct: 102 SARSSTTAATTTTTTTTTTT 161
>TC18379 similar to UP|Q9SBM1 (Q9SBM1) Hydroxyproline-rich glycoprotein
DZ-HRGP precursor, partial (8%)
Length = 584
Score = 35.0 bits (79), Expect = 0.027
Identities = 16/39 (41%), Positives = 24/39 (61%)
Frame = +3
Query: 30 LKLTKAPPTTTTETTTTATTTETSTTETTTTKTTTTPTT 68
+ ++ P +T+ TT TTT TSTT TTT +TT ++
Sbjct: 210 IAISSTPVLSTSNGATTTTTTSTSTTRTTTILGSTTTSS 326
Score = 28.9 bits (63), Expect = 1.9
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +3
Query: 35 APPTTTTETTTTATTTETSTTETTTTKTTT 64
A TTTT T+TT TTT +T T++ T++
Sbjct: 252 ATTTTTTSTSTTRTTTILGSTTTSSLWTSS 341
Score = 28.5 bits (62), Expect = 2.5
Identities = 15/39 (38%), Positives = 20/39 (50%)
Frame = +3
Query: 27 LCRLKLTKAPPTTTTETTTTATTTETSTTETTTTKTTTT 65
L + T T+ TTTT T+T T+ T T TTT+
Sbjct: 207 LIAISSTPVLSTSNGATTTTTTSTSTTRTTTILGSTTTS 323
Score = 28.1 bits (61), Expect = 3.3
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +3
Query: 32 LTKAPPTTTTETTTTATTTETSTTETTTTKTTTT 65
L+ + TTT TT+T+TT T+ +TTT + T
Sbjct: 234 LSTSNGATTTTTTSTSTTRTTTILGSTTTSSLWT 335
Score = 26.9 bits (58), Expect = 7.3
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +3
Query: 38 TTTTETTTTATTTETSTTETTTTKTTTT 65
TTTT T+T+ T T T TTT+ T+
Sbjct: 255 TTTTTTSTSTTRTTTILGSTTTSSLWTS 338
>BP067133
Length = 507
Score = 34.7 bits (78), Expect = 0.035
Identities = 14/37 (37%), Positives = 26/37 (69%)
Frame = +1
Query: 31 KLTKAPPTTTTETTTTATTTETSTTETTTTKTTTTPT 67
++ + +TTT ++ +++ T TST+ TTTT T++PT
Sbjct: 226 QIAASSASTTTASSASSSATSTSTSPTTTTTATSSPT 336
Score = 30.8 bits (68), Expect = 0.51
Identities = 13/29 (44%), Positives = 21/29 (71%)
Frame = +1
Query: 40 TTETTTTATTTETSTTETTTTKTTTTPTT 68
++ +TTTA++ +S T T+T+ TTTT T
Sbjct: 238 SSASTTTASSASSSATSTSTSPTTTTTAT 324
Score = 28.5 bits (62), Expect = 2.5
Identities = 11/30 (36%), Positives = 21/30 (69%)
Frame = +1
Query: 38 TTTTETTTTATTTETSTTETTTTKTTTTPT 67
++ T T+T+ TTT T+T+ T + ++ +PT
Sbjct: 274 SSATSTSTSPTTTTTATSSPTASPSSPSPT 363
Score = 27.3 bits (59), Expect = 5.6
Identities = 12/41 (29%), Positives = 23/41 (55%)
Frame = +1
Query: 28 CRLKLTKAPPTTTTETTTTATTTETSTTETTTTKTTTTPTT 68
C K ++ TTT ++ + ++T+ +T+ TTTT T+
Sbjct: 205 CSTK*LNQIAASSASTTTASSASSSATSTSTSPTTTTTATS 327
>TC11095 similar to PIR|T05112|T05112 splicing factor 9G8-like SR protein
RSZp22 [validated] - Arabidopsis thaliana
{Arabidopsis thaliana;}, partial (89%)
Length = 912
Score = 34.3 bits (77), Expect = 0.046
Identities = 17/35 (48%), Positives = 21/35 (59%)
Frame = -1
Query: 31 KLTKAPPTTTTETTTTATTTETSTTETTTTKTTTT 65
K+T+ T TTATTT STT TTT+ T+T
Sbjct: 408 KMTRFTTLITFHIRTTATTTRASTTTTTTSTATST 304
Score = 28.5 bits (62), Expect = 2.5
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 39 TTTETTTTATTTETSTTETTTTKTTTTPT 67
TTT +TT TTT T+T+ + + PT
Sbjct: 357 TTTRASTTTTTTSTATSTSRIVRKLNPPT 271
Score = 27.3 bits (59), Expect = 5.6
Identities = 16/36 (44%), Positives = 18/36 (49%)
Frame = -1
Query: 33 TKAPPTTTTETTTTATTTETSTTETTTTKTTTTPTT 68
T A T+ TT T TT TTT +TTT TT
Sbjct: 429 THAAFTSKMTRFTTLITFHIRTTATTTRASTTTTTT 322
>AV418552
Length = 386
Score = 33.9 bits (76), Expect = 0.060
Identities = 23/46 (50%), Positives = 24/46 (52%), Gaps = 7/46 (15%)
Frame = +1
Query: 30 LKLTKAPPTTTT---ETTTTATTTETSTTETT----TTKTTTTPTT 68
L T A PTT T TTT A T T+ T T TT T TTPTT
Sbjct: 127 LAATAAAPTTATCTAPTTTLAAATYTAPTAATNTAPTTTTCTTPTT 264
Score = 33.1 bits (74), Expect = 0.10
Identities = 19/35 (54%), Positives = 20/35 (56%)
Frame = +1
Query: 35 APPTTTTETTTTATTTETSTTETTTTKTTTTPTTG 69
AP TT T TA T T+T TTTT TT TTG
Sbjct: 169 APTTTLAAATYTAPTAATNTAPTTTT-CTTPTTTG 270
Score = 32.7 bits (73), Expect = 0.13
Identities = 18/32 (56%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +1
Query: 38 TTTTETTTTATT-TETSTTETTTTKTTTTPTT 68
T T TTTT TT T T T TT T TTP T
Sbjct: 220 TNTAPTTTTCTTPTTTGAAATYTTSTHTTPAT 315
>AI967515
Length = 376
Score = 33.9 bits (76), Expect = 0.060
Identities = 15/33 (45%), Positives = 23/33 (69%)
Frame = +2
Query: 35 APPTTTTETTTTATTTETSTTETTTTKTTTTPT 67
+P T T+ TT A T+ +S + +TTT+ TT+PT
Sbjct: 137 SPRTHTSCATTLAATSASSASRSTTTRVTTSPT 235
Score = 27.3 bits (59), Expect = 5.6
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = +2
Query: 37 PTTTTETTTTATTTETSTTETTTTKTTTTPTT 68
P+T+ T T+ TT +T+ ++ +++TTT T
Sbjct: 128 PSTSPRTHTSCATTLAATSASSASRSTTTRVT 223
>AW719349
Length = 143
Score = 33.5 bits (75), Expect = 0.078
Identities = 18/36 (50%), Positives = 21/36 (58%)
Frame = -1
Query: 33 TKAPPTTTTETTTTATTTETSTTETTTTKTTTTPTT 68
T P++T TT T T TST TT + TTTT TT
Sbjct: 107 TATTPSSTASTTAT-TLHHTSTASTTASATTTTATT 3
>TC20112 weakly similar to UP|Q9SBM1 (Q9SBM1) Hydroxyproline-rich
glycoprotein DZ-HRGP precursor, partial (11%)
Length = 523
Score = 33.1 bits (74), Expect = 0.10
Identities = 19/43 (44%), Positives = 25/43 (57%), Gaps = 6/43 (13%)
Frame = -1
Query: 31 KLTKAPPTTTTETTTTATTTETSTTETTT------TKTTTTPT 67
K T +P + +T TTTATT+ T+TT TT T +TT T
Sbjct: 496 KPTASPTSASTPNTTTATTSSTTTTAITTRVIFPITPSTTKST 368
Score = 32.3 bits (72), Expect = 0.17
Identities = 15/32 (46%), Positives = 20/32 (61%)
Frame = -1
Query: 37 PTTTTETTTTATTTETSTTETTTTKTTTTPTT 68
PTT + + TA+ T ST TTT T++T TT
Sbjct: 517 PTTMSTSKPTASPTSASTPNTTTATTSSTTTT 422
Score = 28.5 bits (62), Expect = 2.5
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 5/41 (12%)
Frame = -1
Query: 33 TKAPPTTTTETTTTATTTETSTTETTTTKTT-----TTPTT 68
T P + T +T TTT T+++ TTT TT TP+T
Sbjct: 502 TSKPTASPTSASTPNTTTATTSSTTTTAITTRVIFPITPST 380
Score = 27.3 bits (59), Expect = 5.6
Identities = 13/37 (35%), Positives = 20/37 (53%)
Frame = -1
Query: 37 PTTTTETTTTATTTETSTTETTTTKTTTTPTTGEEDQ 73
P TTT TT++ TTT +T +TT +T ++
Sbjct: 463 PNTTTATTSSTTTTAITTRVIFPITPSTTKSTASANR 353
>BP043927
Length = 513
Score = 31.6 bits (70), Expect = 0.30
Identities = 15/34 (44%), Positives = 25/34 (73%), Gaps = 2/34 (5%)
Frame = +2
Query: 36 PPTTTTETTTTATTTETSTTETT--TTKTTTTPT 67
PP + + T T++T++ ++T TT T+KTTTTP+
Sbjct: 50 PPWSISTTMTSSTSSTMASTPTTPPTSKTTTTPS 151
>TC15523 similar to UP|GRPA_MAIZE (P10979) Glycine-rich RNA-binding,
abscisic acid-inducible protein, complete
Length = 972
Score = 31.6 bits (70), Expect = 0.30
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = -3
Query: 38 TTTTETTTTATTTETSTTETTTTKTTTTPTT 68
TTTT TTTA ++ ++TT +T T T TT
Sbjct: 757 TTTTTFTTTAVSSSSATTIASTATTAITATT 665
Score = 31.2 bits (69), Expect = 0.39
Identities = 19/42 (45%), Positives = 23/42 (54%)
Frame = -3
Query: 39 TTTETTTTATTTETSTTETTTTKTTTTPTTGEEDQL*ILGFV 80
+T T TATTT T +T TTTT +T TT LGF+
Sbjct: 697 STATTAITATTTTTVSTFTTTTAVST--TTAAASTAASLGFI 578
Score = 30.8 bits (68), Expect = 0.51
Identities = 16/33 (48%), Positives = 19/33 (57%)
Frame = -3
Query: 33 TKAPPTTTTETTTTATTTETSTTETTTTKTTTT 65
T A T T TTTT TTT S++ TT +T T
Sbjct: 784 TAAFATATITTTTTFTTTAVSSSSATTIASTAT 686
Score = 30.0 bits (66), Expect = 0.86
Identities = 15/32 (46%), Positives = 17/32 (52%)
Frame = -3
Query: 33 TKAPPTTTTETTTTATTTETSTTETTTTKTTT 64
T T TT T T TTT ++ T TT TTT
Sbjct: 709 TTIASTATTAITATTTTTVSTFTTTTAVSTTT 614
Score = 29.3 bits (64), Expect = 1.5
Identities = 23/61 (37%), Positives = 26/61 (41%), Gaps = 7/61 (11%)
Frame = -3
Query: 12 KVLLQPSKLC*IR*RLCRLKLTKAPPTTTTETTTTAT-------TTETSTTETTTTKTTT 64
K L+ P+ R+ R A T TT TT T T TT ST T T TTT
Sbjct: 829 KTLIPPASTA----RVARSTAAFATATITTTTTFTTTAVSSSSATTIASTATTAITATTT 662
Query: 65 T 65
T
Sbjct: 661 T 659
Score = 29.3 bits (64), Expect = 1.5
Identities = 14/37 (37%), Positives = 18/37 (47%)
Frame = -3
Query: 33 TKAPPTTTTETTTTATTTETSTTETTTTKTTTTPTTG 69
T T T TTT +T T T+ TTT +T + G
Sbjct: 694 TATTAITATTTTTVSTFTTTTAVSTTTAAASTAASLG 584
Score = 28.9 bits (63), Expect = 1.9
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = -3
Query: 38 TTTTETTTTATTTETSTTETTTTKTTTT 65
+T T T TTT ST TTT +TTT
Sbjct: 697 STATTAITATTTTTVSTFTTTTAVSTTT 614
Score = 28.5 bits (62), Expect = 2.5
Identities = 13/31 (41%), Positives = 20/31 (63%)
Frame = -3
Query: 38 TTTTETTTTATTTETSTTETTTTKTTTTPTT 68
TTT ++++ATT ++ T T TTTT +T
Sbjct: 739 TTTAVSSSSATTIASTATTAITATTTTTVST 647
>TC16018 UP|Q8MZB8 (Q8MZB8) AT15479p (CG31542-PA), partial (7%)
Length = 425
Score = 31.2 bits (69), Expect = 0.39
Identities = 17/39 (43%), Positives = 20/39 (50%)
Frame = +1
Query: 30 LKLTKAPPTTTTETTTTATTTETSTTETTTTKTTTTPTT 68
L L + P TTT TTT T ST TTT +P+T
Sbjct: 166 LLLLQQPLPTTTTTTTLLRRTSPSTATTTTLLRRASPST 282
Score = 31.2 bits (69), Expect = 0.39
Identities = 17/32 (53%), Positives = 19/32 (59%)
Frame = +3
Query: 37 PTTTTETTTTATTTETSTTETTTTKTTTTPTT 68
P+T TT T T T+TT TTTK TPTT
Sbjct: 45 PSTKAVTTLTPPTPTTTTTAETTTK-NNTPTT 137
Score = 27.3 bits (59), Expect = 5.6
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = +3
Query: 36 PPTTTTETTTTATTTETSTTETTTTKTTTTPTT 68
P TTTT TTT T T+ T P+T
Sbjct: 84 PTTTTTAETTTKNNTPTTLLHQAAPAALTPPST 182
Score = 26.9 bits (58), Expect = 7.3
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = +3
Query: 33 TKAPPTTTTETTTTATTTETSTTET 57
T PPT TT TTT TTT+ +T T
Sbjct: 66 TLTPPTPTT-TTTAETTTKNNTPTT 137
>TC8182 weakly similar to UP|Q93VA8 (Q93VA8) At1g76010/T4O12_22, partial
(13%)
Length = 611
Score = 31.2 bits (69), Expect = 0.39
Identities = 17/35 (48%), Positives = 24/35 (68%), Gaps = 2/35 (5%)
Frame = -1
Query: 33 TKAPPTTTTETTTTATT--TETSTTETTTTKTTTT 65
T A P+++ ETTT+ATT T ++T T+T T TT
Sbjct: 149 TIASPSSSPETTTSATTKATASATIATSTVPTITT 45
>TC15164 similar to UP|Q9ZTK7 (Q9ZTK7) CONSTANS-like protein 2, partial
(57%)
Length = 1185
Score = 31.2 bits (69), Expect = 0.39
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = +2
Query: 32 LTKAPPTTTTET--TTTATTTETSTTETTTTKTTTTPTT 68
L A P TTT T T + T S + +TT TTT PT+
Sbjct: 281 LPSASPVTTTSTPPTPSPAATNASPSRRSTTTTTTPPTS 397
Score = 26.6 bits (57), Expect = 9.6
Identities = 20/71 (28%), Positives = 31/71 (43%)
Frame = +2
Query: 26 RLCRLKLTKAPPTTTTETTTTATTTETSTTETTTTKTTTTPTTGEEDQL*ILGFVMSTTL 85
+L R +T PP T + + S+T TTTT TT + + L ++TT
Sbjct: 545 KLTRQSITAPPPPTESFRCNHRARSLQSSTTTTTTLTTKSISLP-------LSLSLTTTT 703
Query: 86 MMIIRVLMRRK 96
+ L RR+
Sbjct: 704 LNRTTTLCRRR 736
>TC9652 weakly similar to UP|AAP46157 (AAP46157) Latex abundant protein 1,
partial (62%)
Length = 576
Score = 30.8 bits (68), Expect = 0.51
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 7/66 (10%)
Frame = +1
Query: 38 TTTTETTTTATTTETSTTETTTTKTT-------TTPTTGEEDQL*ILGFVMSTTLMMIIR 90
TTT TT+T T + TT+T T T P T EDQ+ ++ +T + +
Sbjct: 67 TTTPSTTSTTTIQPPTAAATTSTSPTAAPFLPPTRPVTRSEDQMNPSTTIVLSTPLTLSL 246
Query: 91 VLMRRK 96
+LM K
Sbjct: 247 LLMPMK 264
>BP036717
Length = 477
Score = 30.8 bits (68), Expect = 0.51
Identities = 13/32 (40%), Positives = 20/32 (61%)
Frame = +2
Query: 37 PTTTTETTTTATTTETSTTETTTTKTTTTPTT 68
P+TTT T+ T + T+T +T TTT+P +
Sbjct: 5 PSTTTATSRIPTLSATATAKTARISTTTSPAS 100
>TC13578 similar to UP|Q7RZL8 (Q7RZL8) Predicted protein, partial (4%)
Length = 416
Score = 30.8 bits (68), Expect = 0.51
Identities = 14/19 (73%), Positives = 15/19 (78%)
Frame = -3
Query: 52 TSTTETTTTKTTTTPTTGE 70
T+TT TTTT TTTT TGE
Sbjct: 348 TTTTTTTTTTTTTTHNTGE 292
Score = 30.4 bits (67), Expect = 0.66
Identities = 14/20 (70%), Positives = 15/20 (75%)
Frame = -3
Query: 37 PTTTTETTTTATTTETSTTE 56
PTTTT TTTT TTT +T E
Sbjct: 351 PTTTTTTTTTTTTTTHNTGE 292
Score = 28.1 bits (61), Expect = 3.3
Identities = 12/18 (66%), Positives = 13/18 (71%)
Frame = -3
Query: 36 PPTTTTETTTTATTTETS 53
P TTTT TTTT TTT +
Sbjct: 351 PTTTTTTTTTTTTTTHNT 298
>AV412439
Length = 419
Score = 25.8 bits (55), Expect(2) = 0.52
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +3
Query: 37 PTTTTETTTTATTTETSTTETTT 59
P +T TTTT TTT+ T T T
Sbjct: 213 PHGSTSTTTTKTTTKKMKTTTAT 281
Score = 23.5 bits (49), Expect(2) = 0.52
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +2
Query: 56 ETTTTKTTTTPTTGEEDQ 73
ETTTT TTTT T E +
Sbjct: 281 ETTTTTTTTTATPKGETE 334
>TC16065 weakly similar to UP|Q9SBM1 (Q9SBM1) Hydroxyproline-rich
glycoprotein DZ-HRGP precursor, partial (20%)
Length = 608
Score = 30.4 bits (67), Expect = 0.66
Identities = 15/32 (46%), Positives = 17/32 (52%)
Frame = +3
Query: 32 LTKAPPTTTTETTTTATTTETSTTETTTTKTT 63
+ APPTT T TTT TST TT +T
Sbjct: 249 MATAPPTTITRPTTTTIAAATSTLWWTTITST 344
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.347 0.149 0.494
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,085,015
Number of Sequences: 28460
Number of extensions: 108953
Number of successful extensions: 2700
Number of sequences better than 10.0: 117
Number of HSP's better than 10.0 without gapping: 1750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2310
length of query: 478
length of database: 4,897,600
effective HSP length: 94
effective length of query: 384
effective length of database: 2,222,360
effective search space: 853386240
effective search space used: 853386240
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 14 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.8 bits)
S2: 57 (26.6 bits)
Medicago: description of AC123898.6