TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC123593.2 + phase: 0 /pseudo
         (199 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP062615                                                               27  1.8
AV428364                                                               25  9.0
BP033980                                                               25  9.0
TC18975 similar to UP|AAS54026 (AAS54026) AFR654Wp, partial (11%)      25  9.0
TC19906 similar to PIR|AC1649|AC1649 phage related protein [impo...    25  9.0

>BP062615 
          Length = 496

 Score = 27.3 bits (59), Expect = 1.8
 Identities = 10/32 (31%), Positives = 21/32 (65%)
 Frame = +3

Query: 168 YPWALWR*HVISFIIVKGQSHLLIWIFQLVQI 199
           +PW+LW  + ++      +++  IW+F+LVQ+
Sbjct: 372 FPWSLWSHYSLN------RNNCCIWLFRLVQV 449


>AV428364 
          Length = 186

 Score = 25.0 bits (53), Expect = 9.0
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -3

Query: 47  GLCGKRVGWIKDR 59
           G+CG  VGW+ DR
Sbjct: 115 GVCGHSVGWVVDR 77


>BP033980 
          Length = 615

 Score = 25.0 bits (53), Expect = 9.0
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +3

Query: 80  QGDHLTPFLCSRR 92
           QG HL+PF CS R
Sbjct: 555 QGTHLSPFFCSSR 593


>TC18975 similar to UP|AAS54026 (AAS54026) AFR654Wp, partial (11%)
          Length = 665

 Score = 25.0 bits (53), Expect = 9.0
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 52  RVGWIKDRVFGGNVSILVNGS 72
           ++ WI +R+F   V  LVNGS
Sbjct: 346 QIFWIHERIFADQVLHLVNGS 284


>TC19906 similar to PIR|AC1649|AC1649 phage related protein [imported] -
           Listeria innocua (strain                Clip11262)
           {Listeria innocua;}, partial (4%)
          Length = 509

 Score = 25.0 bits (53), Expect = 9.0
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -1

Query: 145 LREFEMASSLKVNFLKVVS*ELIYPWALWR*HV 177
           L++ ++ S L V +L++    L+ PW + R*HV
Sbjct: 230 LKKEKVGSGLTVTYLQI----LLAPWGIQR*HV 144


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.363    0.169    0.619 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,096,513
Number of Sequences: 28460
Number of extensions: 36262
Number of successful extensions: 350
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 349
length of query: 199
length of database: 4,897,600
effective HSP length: 86
effective length of query: 113
effective length of database: 2,450,040
effective search space: 276854520
effective search space used: 276854520
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (22.0 bits)
S2: 53 (25.0 bits)