TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC123573.8 + phase: 0 /pseudo
         (548 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC18710                                                                38  0.004
TC18742 similar to UP|Q9FZG5 (Q9FZG5) T2E6.4, partial (3%)             37  0.006
TC13022 similar to UP|Q7XQH1 (Q7XQH1) OJ000114_01.6 protein, par...    32  0.35
AV408845                                                               31  0.45
BP042205                                                               30  0.77
AV428942                                                               30  1.0
BP072254                                                               28  2.9
TC19003                                                                28  5.0
TC15970                                                                28  5.0
AV776349                                                               28  5.0
TC14124 UP|Q8H945 (Q8H945) Phosphoenolpyruvate carboxylase  , co...    24  5.8
TC14968 similar to UP|Q8TTE6 (Q8TTE6) Bacterial extracellular so...    27  6.5
TC15305 similar to GB|CAB42557.1|4775270|ATH131214 SF2/ASF-like ...    27  6.5
TC10473 similar to UP|Q7XBE3 (Q7XBE3) Humj1, partial (69%)             27  6.5
AV780930                                                               27  8.5
AV426792                                                               27  8.5
AV411639                                                               27  8.5
AV777838                                                               23  8.8

>TC18710 
          Length = 843

 Score = 38.1 bits (87), Expect = 0.004
 Identities = 16/27 (59%), Positives = 21/27 (77%)
 Frame = +2

Query: 1   RGLRQGDPFSPFLFLLAAEGFHVLMES 27
           RGLRQGDPFSP+LFL   E   +L+++
Sbjct: 740 RGLRQGDPFSPYLFLFTMEVLSLLIQN 820


>TC18742 similar to UP|Q9FZG5 (Q9FZG5) T2E6.4, partial (3%)
          Length = 912

 Score = 37.4 bits (85), Expect = 0.006
 Identities = 30/110 (27%), Positives = 53/110 (47%)
 Frame = -3

Query: 47  MSHLQFADDTLIVGEKS*ANVTGMRAALLLFETMSGLKVNFSKSLLVSVNVVGLWLSMVA 106
           +SHL FAD+ ++       ++  +   L +F+ +SGL  N +KS  V + V     + + 
Sbjct: 373 ISHLCFADNLMVFSNGYLESIAIINNVLHIFQHLSGLTPNPAKS-EVFILVKETTKNQIT 197

Query: 107 RVLNCRVGSLPFVYLGMLIGGNVRCLSF*EPIIDRIKSRLSGWKSKHLSF 156
            +L  + G LP   LG+         S  + ++DR  S+L  W  + LS+
Sbjct: 196 NMLGYKEGKLPVR*LGVPQLTTKLKASDCKVLVDRKPSKLQHWTGRSLSY 47


>TC13022 similar to UP|Q7XQH1 (Q7XQH1) OJ000114_01.6 protein, partial (5%)
          Length = 565

 Score = 31.6 bits (70), Expect = 0.35
 Identities = 12/28 (42%), Positives = 18/28 (63%)
 Frame = +3

Query: 171 LFMLFPFLRLHQVSFPLLTLYFFFFFFC 198
           LF+L   +R + + F  + + FFFFFFC
Sbjct: 84  LFLLLAIIRCYFLPFRCVAILFFFFFFC 167


>AV408845 
          Length = 429

 Score = 31.2 bits (69), Expect = 0.45
 Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = +2

Query: 164 SMSCHLCLFMLFP-FLRLHQVSFPLLTLYFFFFFF 197
           S+  H+CL  ++  FL+ ++++F     +FFFFFF
Sbjct: 29  SLKLHICLRRIYRRFLQTYKLAFFFFFFFFFFFFF 133


>BP042205 
          Length = 531

 Score = 30.4 bits (67), Expect = 0.77
 Identities = 23/58 (39%), Positives = 29/58 (49%)
 Frame = -1

Query: 169 LCLFMLFPFLRLHQVSFPLLTLYFFFFFFCRGVGGEDHKKYLGLIRILSV*VRRLVVW 226
           L + +L P + LHQ S   L L F+FF        EDH K   LIRI +     LV+W
Sbjct: 384 LKISLLIPNVTLHQPSLQWLKLEFYFF--------EDHSKI--LIRIYTF----LVIW 253


>AV428942 
          Length = 362

 Score = 30.0 bits (66), Expect = 1.0
 Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
 Frame = -1

Query: 165 MSCHLCLF-MLFPFLR--LHQVSFPLLTLYFFFFFFCRGVGGEDHKK 208
           ++C + +F +LF  L+  L++V FPL TL     F   G+GG D ++
Sbjct: 263 INCQIVVFEILFE*LQEQLNRVLFPLFTLILRLVFLLSGIGGADARR 123


>BP072254 
          Length = 419

 Score = 28.5 bits (62), Expect = 2.9
 Identities = 24/60 (40%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = -2

Query: 132 LSF*EPIIDRIKSRLSG-WKSKHLSFGVV*FC*SMSCHLCLFMLFPFLRLHQVSFPLLTL 190
           LSF  P   R   RL   W++    FG     *SMSC  C+  LFP      V FPL+ L
Sbjct: 364 LSFPSPPFCRPVLRLDRVWRTPRFRFG-----*SMSCWACVSGLFPL-----VCFPLVCL 215


>TC19003 
          Length = 467

 Score = 27.7 bits (60), Expect = 5.0
 Identities = 13/32 (40%), Positives = 19/32 (58%), Gaps = 2/32 (6%)
 Frame = +1

Query: 169 LCLFMLFPFLRLHQVSFP--LLTLYFFFFFFC 198
           LC F L  F  + ++ +   ++ L FFFFFFC
Sbjct: 268 LC*FSLISFSCISKLRYDKLIMCLVFFFFFFC 363


>TC15970 
          Length = 553

 Score = 27.7 bits (60), Expect = 5.0
 Identities = 12/32 (37%), Positives = 18/32 (55%)
 Frame = +3

Query: 165 MSCHLCLFMLFPFLRLHQVSFPLLTLYFFFFF 196
           +SCH CL+      + H +  PLL ++F  FF
Sbjct: 342 LSCHTCLYQNICVFKAHLL--PLLVVHFAMFF 431


>AV776349 
          Length = 486

 Score = 27.7 bits (60), Expect = 5.0
 Identities = 12/31 (38%), Positives = 19/31 (60%)
 Frame = -2

Query: 168 HLCLFMLFPFLRLHQVSFPLLTLYFFFFFFC 198
           H+  F  F    +H V + + +L+FFFF+FC
Sbjct: 179 HVTCFTFFRISPVHVV-YLMHSLFFFFFYFC 90


>TC14124 UP|Q8H945 (Q8H945) Phosphoenolpyruvate carboxylase  , complete
          Length = 3367

 Score = 23.9 bits (50), Expect(2) = 5.8
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 178 LRLHQVSFPLLTLYFFFFFF 197
           L L+  SF ++  +FFFFFF
Sbjct: 7   LYLNCFSFVVIISFFFFFFF 66



 Score = 21.6 bits (44), Expect(2) = 5.8
 Identities = 9/22 (40%), Positives = 12/22 (53%)
 Frame = +1

Query: 191 YFFFFFFCRGVGGEDHKKYLGL 212
           +FFFFFF   +G    +   GL
Sbjct: 52  FFFFFFFSYPIGPSHTQVVKGL 117


>TC14968 similar to UP|Q8TTE6 (Q8TTE6) Bacterial extracellular
           solute-binding family 3 protein, partial (3%)
          Length = 503

 Score = 27.3 bits (59), Expect = 6.5
 Identities = 13/42 (30%), Positives = 22/42 (51%)
 Frame = +2

Query: 485 RFGTLFIVGWVFVRFSQVCLRIISINFVLFVEIALWCPNLFC 526
           RFG  F++GW             S+ +VL +++ ++CP L C
Sbjct: 89  RFGVGFLIGWG------------SVLYVLVLQLIIFCPLLGC 178


>TC15305 similar to GB|CAB42557.1|4775270|ATH131214 SF2/ASF-like splicing
           modulator Srp30 {Arabidopsis thaliana;} , partial (20%)
          Length = 576

 Score = 27.3 bits (59), Expect = 6.5
 Identities = 10/22 (45%), Positives = 15/22 (67%)
 Frame = +2

Query: 20  GFHVLMESLSVNNFYTGYQIGI 41
           GFH LME+L+V   + GY + +
Sbjct: 365 GFHCLMENLNVPELFLGYLLSV 430


>TC10473 similar to UP|Q7XBE3 (Q7XBE3) Humj1, partial (69%)
          Length = 786

 Score = 27.3 bits (59), Expect = 6.5
 Identities = 14/32 (43%), Positives = 17/32 (52%), Gaps = 7/32 (21%)
 Frame = +2

Query: 174 LFPFLRLHQVS-------FPLLTLYFFFFFFC 198
           LFP L+ H V        F L  L+F FF+FC
Sbjct: 557 LFPCLKFHLVFPFIFFLLFQLFVLFFPFFYFC 652


>AV780930 
          Length = 516

 Score = 26.9 bits (58), Expect = 8.5
 Identities = 12/27 (44%), Positives = 16/27 (58%)
 Frame = +2

Query: 187 LLTLYFFFFFFCRGVGGEDHKKYLGLI 213
           LL  +FFFFFFC  + G   +   GL+
Sbjct: 347 LLFFFFFFFFFCAWLLGVAVRSASGLV 427


>AV426792 
          Length = 432

 Score = 26.9 bits (58), Expect = 8.5
 Identities = 13/41 (31%), Positives = 22/41 (52%), Gaps = 2/41 (4%)
 Frame = -1

Query: 154 LSFGVV*--FC*SMSCHLCLFMLFPFLRLHQVSFPLLTLYF 192
           ++FG++   +C  M C  C F+ FPF     +  P L L++
Sbjct: 393 ITFGLISPFYCFIMCCFSCCFLGFPFFFFSLLFSPCLLLHY 271


>AV411639 
          Length = 349

 Score = 26.9 bits (58), Expect = 8.5
 Identities = 12/29 (41%), Positives = 16/29 (54%)
 Frame = -3

Query: 338 LICVSEVGGRMVTLGNGIGGCLCGRRSWW 366
           L+ +S  GG  V  G+G G  + GR  WW
Sbjct: 278 LVVLSGGGGAAVRKGSGGGAGMGGRGRWW 192


>AV777838 
          Length = 565

 Score = 23.5 bits (49), Expect(2) = 8.8
 Identities = 9/17 (52%), Positives = 10/17 (57%)
 Frame = +3

Query: 181 HQVSFPLLTLYFFFFFF 197
           H  SF     +FFFFFF
Sbjct: 204 HWASFFFFFFFFFFFFF 254



 Score = 21.6 bits (44), Expect(2) = 8.8
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 191 YFFFFFFCRGVGGEDHKKY 209
           +FFFFFF      E H+++
Sbjct: 237 FFFFFFFFFFFFHESHRRW 293


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.351    0.160    0.556 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,139,326
Number of Sequences: 28460
Number of extensions: 185417
Number of successful extensions: 2891
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 2424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2670
length of query: 548
length of database: 4,897,600
effective HSP length: 95
effective length of query: 453
effective length of database: 2,193,900
effective search space: 993836700
effective search space used: 993836700
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.9 bits)
S2: 58 (26.9 bits)