TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC123570.3 + phase: 0 /pseudo
         (1023 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC15659                                                               116  2e-26
TC17965                                                                96  3e-20
BP056555                                                               94  1e-19
TC18214 similar to UP|SEC5_ARATH (Q8S3U9) Exocyst complex compon...    30  1.5
TC17879 similar to AAQ56782 (AAQ56782) At2g27460, partial (32%)        30  2.5
TC11614 similar to UP|Q9FHH4 (Q9FHH4) Diacylglycerol kinase-like...    29  4.3
TC14718 similar to UP|NCPR_CATRO (Q05001) NADPH--cytochrome P450...    28  9.7

>TC15659 
          Length = 574

 Score =  116 bits (290), Expect = 2e-26
 Identities = 67/101 (66%), Positives = 77/101 (75%), Gaps = 2/101 (1%)
 Frame = +1

Query: 916  DKDILYGLLLVLSGMLTEKN--ESLLFKAIQIKNDVNG*FLFLPILQLVRESCIQCLVAL 973
            DKDILY LLLVLSG+LTEKN  E++   A  I N +    +  P   LVRE+ +QCLVAL
Sbjct: 1    DKDILYVLLLVLSGILTEKNGQEAVTENAHIIINCLIK-LVDYPHKTLVRETAVQCLVAL 177

Query: 974  SKLPHVRIYPLRTQVLEAISKCLDDTKRSVRNEAVKCRQAW 1014
            S LPHVRIYP+RTQVL AISKCLDD KR+VR EAVKC+QAW
Sbjct: 178  SVLPHVRIYPMRTQVLRAISKCLDDRKRAVRLEAVKCQQAW 300


>TC17965 
          Length = 575

 Score = 95.9 bits (237), Expect = 3e-20
 Identities = 49/63 (77%), Positives = 57/63 (89%)
 Frame = +1

Query: 873 RYLLLRAFARVMSVTPLIVILNDAKELISVLLDCLSMLTEDIQDKDILYGLLLVLSGMLT 932
           R  L RAFA ++S TPLIVI+++AK+LI VLL+CLSMLTEDIQDKDILYGLLLVLSG+LT
Sbjct: 214 RSFLYRAFAHIISDTPLIVIVSEAKKLIPVLLNCLSMLTEDIQDKDILYGLLLVLSGILT 393

Query: 933 EKN 935
           EKN
Sbjct: 394 EKN 402



 Score = 72.8 bits (177), Expect = 3e-13
 Identities = 43/105 (40%), Positives = 66/105 (61%), Gaps = 4/105 (3%)
 Frame = +1

Query: 701 AEKSDELTLEEALHIIFNTKICFSSDNMLQICDGSINRNEIVLTDVCLGMTNDRLLQTNA 760
           AE S+ LTLEEAL++IF+TKI   S ++LQ C+G+ N +E+VLT+ CLG+ NDRLLQ++ 
Sbjct: 1   AENSNNLTLEEALNVIFSTKIWVCSTDVLQGCNGADNGSEMVLTE*CLGIANDRLLQSSN 180

Query: 761 VCGL----SWIGKGLLLRGHEKIKDITKILTECLISDRNSSLPLI 801
            C L     W  +  L R    I   T ++   ++S+    +P++
Sbjct: 181 QCHLWALMDW-KRSFLYRAFAHIISDTPLIV--IVSEAKKLIPVL 306


>BP056555 
          Length = 428

 Score = 93.6 bits (231), Expect = 1e-19
 Identities = 48/63 (76%), Positives = 56/63 (88%)
 Frame = -3

Query: 873 RYLLLRAFARVMSVTPLIVILNDAKELISVLLDCLSMLTEDIQDKDILYGLLLVLSGMLT 932
           R  L RAFA ++S TPLIVI+++AK+LI VLL+CLSMLTEDI DKDILYGLLLVLSG+LT
Sbjct: 417 RSFLYRAFAHIISDTPLIVIVSEAKKLIPVLLNCLSMLTEDIPDKDILYGLLLVLSGILT 238

Query: 933 EKN 935
           EKN
Sbjct: 237 EKN 229


>TC18214 similar to UP|SEC5_ARATH (Q8S3U9) Exocyst complex component Sec5,
           partial (20%)
          Length = 656

 Score = 30.4 bits (67), Expect = 1.5
 Identities = 11/37 (29%), Positives = 22/37 (58%)
 Frame = -1

Query: 819 KCAADAFHVLMSDAEDCLNRKFHATMRPLYKQRFFSS 855
           KC+     + M +A++C+N+ FH   +   ++RF +S
Sbjct: 296 KCSKILTFIFMKNADECVNQAFHKNAKCFIQERFTTS 186


>TC17879 similar to AAQ56782 (AAQ56782) At2g27460, partial (32%)
          Length = 953

 Score = 29.6 bits (65), Expect = 2.5
 Identities = 20/53 (37%), Positives = 29/53 (53%), Gaps = 3/53 (5%)
 Frame = -2

Query: 392 KGLQILAMFNLDVFPIPKSTFENILKKFMSIII---EDFNKTILWNSTLKSLF 441
           KGLQ+  +   D+      TF +IL KF+SII+   +D    +  NSTL + F
Sbjct: 205 KGLQLRTLRECDIKLRSYGTFISILNKFISIIVLSRKDH*PFLKQNSTLPNSF 47


>TC11614 similar to UP|Q9FHH4 (Q9FHH4) Diacylglycerol kinase-like protein,
            partial (24%)
          Length = 634

 Score = 28.9 bits (63), Expect = 4.3
 Identities = 15/47 (31%), Positives = 24/47 (50%), Gaps = 1/47 (2%)
 Frame = -3

Query: 978  HVRIYPLRTQVLEAISKCLDDTKRSVR-NEAVKCRQAWLVFQIFQEP 1023
            H+ ++P  T   ++ S CL    R+ + N   +C   WL  + FQEP
Sbjct: 278  HIGVFPASTSEFKSNS*CLS*MLRTDQFNHDKRCMPCWL*AKYFQEP 138


>TC14718 similar to UP|NCPR_CATRO (Q05001) NADPH--cytochrome P450 reductase 
           (CPR) (P450R) , partial (36%)
          Length = 1163

 Score = 27.7 bits (60), Expect = 9.7
 Identities = 16/55 (29%), Positives = 28/55 (50%)
 Frame = -3

Query: 661 HVPNIRGILHLFIITLLKGVVPVAQALGSMVNKLISKSNGAEKSDELTLEEALHI 715
           HVPNIR +LH F++ +  G     ++L    N  + K    +K  +L   + +H+
Sbjct: 606 HVPNIRSLLHHFMLHIFLG-----RSLP*EGNNELRKRTTVDKVVQLIFIDVVHL 457


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.326    0.141    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,845,024
Number of Sequences: 28460
Number of extensions: 261253
Number of successful extensions: 1422
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1421
length of query: 1023
length of database: 4,897,600
effective HSP length: 99
effective length of query: 924
effective length of database: 2,080,060
effective search space: 1921975440
effective search space used: 1921975440
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.7 bits)