BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC122730.8 + phase: 0 /pseudo
(739 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP030148 62 4e-10
TC20129 homologue to GB|AAF04891.1|6175165|ATAC011437 Mutator-li... 56 2e-08
AV766619 54 1e-07
BP049972 53 2e-07
BP036178 49 3e-06
TC17953 similar to GB|AAM26637.1|20855902|AY101516 AT3g06940/F17... 49 3e-06
TC18180 weakly similar to GB|AAF04891.1|6175165|ATAC011437 Mutat... 45 3e-05
BF177509 45 5e-05
AV415611 43 2e-04
AV408480 39 0.004
BP038344 30 0.009
TC10129 weakly similar to UP|Q7T9Y7 (Q7T9Y7) Odv-e66, partial (10%) 37 0.009
TC9034 37 0.011
AV421977 37 0.011
TC17328 weakly similar to UP|Q9FGH3 (Q9FGH3) Dihydroflavonol 4-r... 37 0.011
TC16883 similar to UP|Q9STI6 (Q9STI6) Nucleotide sugar epimerase... 37 0.015
TC11455 similar to UP|Q9ZUS8 (Q9ZUS8) At2g37380 protein, partial... 37 0.015
TC14729 homologue to UP|Q8W590 (Q8W590) At2g32080/F22D22.17, par... 36 0.019
TC16717 weakly similar to UP|Q41419 (Q41419) Sucrolytic enzyme/f... 36 0.019
TC14982 similar to UP|Q9FPI2 (Q9FPI2) At1g17620, partial (32%) 36 0.019
>BP030148
Length = 398
Score = 61.6 bits (148), Expect = 4e-10
Identities = 36/119 (30%), Positives = 64/119 (53%)
Frame = +3
Query: 336 QGLLPALAELLPDADNRFCVRHLYNNFRKKYPGKKLKELMWRAAKATYTTAFDREMNEIK 395
+G++ + P A + FC+RHL ++FRK++ L L+W AA F+ ++ EI+
Sbjct: 45 KGIVDGVEANFPTAFHGFCMRHLSDSFRKEFNNTMLVNLLWEAAHVLTVIEFESKILEIE 224
Query: 396 KISEEAYNHLLQTPVKHWSKSKFSNGPLCDTLVNNMTEAFNSVIVVLRKKPIVTMLEDI 454
+IS++A + + P + W+ + F G L N+ E+ ++ I+ PIV M E I
Sbjct: 225 EISQDAAYWIRRIPPRLWATAYF-EGQRFGHLTANIVESLDTWILDASGLPIVQMTECI 398
>TC20129 homologue to GB|AAF04891.1|6175165|ATAC011437 Mutator-like
transposase {Arabidopsis thaliana;} , partial (12%)
Length = 588
Score = 56.2 bits (134), Expect = 2e-08
Identities = 32/96 (33%), Positives = 42/96 (43%), Gaps = 10/96 (10%)
Frame = +3
Query: 593 CFRKERYEICYSHIIYPVNGQSLWRRTEYTD----------LQPPPIKRQPGRPKKNRRK 642
CF Y YS I+P+ +SLW+ D + PP R PGRP+K R +
Sbjct: 9 CFTVATYRKTYSQTIHPIPDKSLWKELSEGDENAAKADQVLINPPKSLRPPGRPRKKRVR 188
Query: 643 DVDEKRDEQQLKKAKYGMKCSRCKAEGHNKSTCKLP 678
D R K + CSRC GH ++TC P
Sbjct: 189 AEDRGR-------VKRVVHCSRCNQTGHFRTTCAAP 275
>AV766619
Length = 412
Score = 53.5 bits (127), Expect = 1e-07
Identities = 33/123 (26%), Positives = 59/123 (47%), Gaps = 7/123 (5%)
Frame = +2
Query: 337 GLLPALAELLPDADNRFCVRHLYNNFRKKYPGKKLKEL-------MWRAAKATYTTAFDR 389
GL +L+E+ + +C+R+L K G+ E + AA A F+R
Sbjct: 47 GLKKSLSEIFEKCHHSYCLRYLAEKLNKDLKGQFSHEARRFMINDFYAAAYAPKQETFER 226
Query: 390 EMNEIKKISEEAYNHLLQTPVKHWSKSKFSNGPLCDTLVNNMTEAFNSVIVVLRKKPIVT 449
+ +K IS EA+N ++Q +HW+ + F NG + L +N + F + + + PI
Sbjct: 227 SVENMKGISSEAFNWVMQNEPEHWANA-FFNGARYNHLTSNFGQQFYNWMSEAHELPITQ 403
Query: 450 MLE 452
M++
Sbjct: 404 MID 412
>BP049972
Length = 496
Score = 52.8 bits (125), Expect = 2e-07
Identities = 31/110 (28%), Positives = 42/110 (38%), Gaps = 19/110 (17%)
Frame = -1
Query: 588 QYVSDCFRKERYEICYSHIIYPVNGQSLWRRTEYTD-------------------LQPPP 628
++ CF Y YS I+P+ +S W D + PP
Sbjct: 493 RFTESCFTVATYRKTYSQTIHPIPDRSFWNELSIEDANANKAVEDANASQSIEIVINPPK 314
Query: 629 IKRQPGRPKKNRRKDVDEKRDEQQLKKAKYGMKCSRCKAEGHNKSTCKLP 678
R PGRP+K R + D R K + CSRC GH ++TC P
Sbjct: 313 SLRPPGRPRKKRVRAEDRGR-------VKRVVHCSRCNQTGHFRTTCAAP 185
>BP036178
Length = 561
Score = 48.9 bits (115), Expect = 3e-06
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 12/92 (13%)
Frame = -2
Query: 599 YEICYSHIIYPVNGQSLWR------------RTEYTDLQPPPIKRQPGRPKKNRRKDVDE 646
Y + YS II P+ +S WR R + ++PP +R PGRPKK +
Sbjct: 560 YRMAYSQIIIPIPDRSQWREHGEGAEGVGGARVDIV-IRPPKTRRPPGRPKKKVLR---- 396
Query: 647 KRDEQQLKKAKYGMKCSRCKAEGHNKSTCKLP 678
+ K+ K ++C RC GH++ C +P
Sbjct: 395 ---VENFKRPKRIVQCGRCHMLGHSQKKCTMP 309
>TC17953 similar to GB|AAM26637.1|20855902|AY101516 AT3g06940/F17A9_9
{Arabidopsis thaliana;}, partial (6%)
Length = 527
Score = 48.9 bits (115), Expect = 3e-06
Identities = 25/58 (43%), Positives = 30/58 (51%)
Frame = +3
Query: 626 PPPIKRQPGRPKKNRRKDVDEKRDEQQLKKAKYGMKCSRCKAEGHNKSTCKLPPPPPQ 683
PPP KR PGRPK + +D K ++CS+CK GHNK TCK P Q
Sbjct: 42 PPPTKRPPGRPKMKPVESID---------MIKRQLQCSKCKELGHNKKTCKNSLPLEQ 188
>TC18180 weakly similar to GB|AAF04891.1|6175165|ATAC011437 Mutator-like
transposase {Arabidopsis thaliana;} , partial (4%)
Length = 513
Score = 45.4 bits (106), Expect = 3e-05
Identities = 30/94 (31%), Positives = 41/94 (42%), Gaps = 3/94 (3%)
Frame = +3
Query: 586 VDQYVSDCFRKERYEICYSHIIYPVNGQSLWRRTE---YTDLQPPPIKRQPGRPKKNRRK 642
V Y S E Y + YS + P+ ++ + + PP +R PGRP R
Sbjct: 6 VYDYCSRYCTTESYRLTYSERVNPIPIMAVPESKDSQPVVTVTPPFTRRPPGRPATKRYV 185
Query: 643 DVDEKRDEQQLKKAKYGMKCSRCKAEGHNKSTCK 676
+ + E + CSRCK GHNKSTCK
Sbjct: 186 SQNIVKRE---------LHCSRCKGLGHNKSTCK 260
>BF177509
Length = 472
Score = 44.7 bits (104), Expect = 5e-05
Identities = 41/174 (23%), Positives = 70/174 (39%), Gaps = 1/174 (0%)
Frame = +1
Query: 409 PVKHWSKSKFSNGPLCDTLVNNMTEAFNSVIVVLRKKPIVTMLEDIRVYLMERWEKNRQK 468
P + W+ + F G L N+ E+ N+ I+ PI+ M+E IR LM + + R+
Sbjct: 34 PPRLWATAYFE-GQRFGHLTANIVESLNTWILEASGLPIIQMMECIRRQLMTWFNERRET 210
Query: 469 VANYADNILPNIRKKI*KRV*FYKQLGGQVCRQQL*TLN*Y*IYFLFVLYPLV*HLYAWN 528
+A ++P+ + + + + A
Sbjct: 211 SMQWASILVPSAERCVAEAL-----------------------------------ERART 285
Query: 529 VLVRRAIEYDYE-IRHRSMNGDSYSINLLRKECSCRKWLLTGLPCCHAISCMKS 581
V RA E ++E I H N +++ + C CR W L GLPC HA++ + S
Sbjct: 286 YQVLRANEAEFEVISHEGSN----IVDIRNRCCLCRGWQLYGLPCAHAVAALLS 435
>AV415611
Length = 219
Score = 42.7 bits (99), Expect = 2e-04
Identities = 15/25 (60%), Positives = 21/25 (84%)
Frame = +3
Query: 553 INLLRKECSCRKWLLTGLPCCHAIS 577
+++ R ECSC+ W LTG+PCCHAI+
Sbjct: 111 VDIDRWECSCKTWQLTGVPCCHAIA 185
>AV408480
Length = 262
Score = 38.5 bits (88), Expect = 0.004
Identities = 16/34 (47%), Positives = 18/34 (52%)
Frame = +2
Query: 673 STCKLPPPPPQPEPGTQPPATQFPTSQPTSDHAP 706
ST PPPPP P P QPP P + P + AP
Sbjct: 143 STTSPPPPPPPPSPSPQPPTRPAPQNGPDPNSAP 244
>BP038344
Length = 525
Score = 30.0 bits (66), Expect = 1.4
Identities = 17/34 (50%), Positives = 18/34 (52%)
Frame = +3
Query: 679 PPPPQPEPGTQPPATQFPTSQPTSDHAPTTQVSA 712
PPPP P T PAT P + PTS PT SA
Sbjct: 183 PPPPSPS-STASPAT--PKASPTSPGPPTLTTSA 275
Score = 29.6 bits (65), Expect(2) = 0.009
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Frame = +1
Query: 622 TDLQPPPIKRQPGRPKKNRR-KDVDEKRDEQQLKKAKYGMKCSRCKAEGHNKSTCKLPPP 680
T +Q P P RP++ RR + + ++R+ +L+ ++ H LPPP
Sbjct: 52 TTIQAVPSPENPNRPRRRRRLRQILQRRNPSRLRLSRQN--------PNHLVLRHPLPPP 207
Query: 681 PP 682
PP
Sbjct: 208 PP 213
Score = 26.6 bits (57), Expect(2) = 0.009
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +3
Query: 674 TCKLPPPPPQPEPGTQPPATQFPTSQPTSDHAPTTQVSATQASASQVSTT 723
T PPP P PPA S+P++ A TQ SA+ ++ S ++++
Sbjct: 264 TTSAPPPMTAPSASGTPPAA--TASRPSA--ATRTQFSASTSTLSPITSS 401
>TC10129 weakly similar to UP|Q7T9Y7 (Q7T9Y7) Odv-e66, partial (10%)
Length = 562
Score = 37.4 bits (85), Expect = 0.009
Identities = 15/39 (38%), Positives = 20/39 (50%)
Frame = +1
Query: 677 LPPPPPQPEPGTQPPATQFPTSQPTSDHAPTTQVSATQA 715
+P PP P PG QPP T P P+ ++P S +A
Sbjct: 28 IPTPPKTPSPGNQPPHTPIPPKTPSPSYSPPNVPSPPKA 144
Score = 31.6 bits (70), Expect = 0.48
Identities = 17/35 (48%), Positives = 19/35 (53%), Gaps = 4/35 (11%)
Frame = +1
Query: 677 LPPPPPQPEPGTQPPATQFP--TSQPTSD--HAPT 707
+P PP P P +QPP T P T PTS H PT
Sbjct: 268 VPTPPSTPSPISQPPYTPTPPKTPSPTSQPPHTPT 372
Score = 30.0 bits (66), Expect = 1.4
Identities = 16/46 (34%), Positives = 18/46 (38%), Gaps = 4/46 (8%)
Frame = +1
Query: 666 KAEGHNKSTCKLPPPPPQPEPGTQPPATQFPTSQPT----SDHAPT 707
KA N P PP P P +QPP P P+ H PT
Sbjct: 139 KAPSPNNHPPYTPTPPKTPSPTSQPPYIPLPPKTPSPISQPPHVPT 276
Score = 29.6 bits (65), Expect = 1.8
Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 6/42 (14%)
Frame = +1
Query: 678 PPPPPQPEPGTQPPA------TQFPTSQPTSDHAPTTQVSAT 713
P PP P P QPP + PTSQP + +P S T
Sbjct: 415 PTPPKTPSPTNQPPHIPSPPNSSSPTSQPPNTPSPPKTPSPT 540
Score = 29.6 bits (65), Expect = 1.8
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +1
Query: 678 PPPPPQPEPGTQPPATQFPTSQPTSDHAP 706
P PP P P +QPP T P P+ + P
Sbjct: 367 PTPPNTPSPISQPPYTPTPPKTPSPTNQP 453
Score = 29.6 bits (65), Expect = 1.8
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +1
Query: 678 PPPPPQPEPGTQPPATQFPTSQPTSDHAP 706
P PP P P +QPP T P + P+ P
Sbjct: 319 PTPPKTPSPTSQPPHTPTPPNTPSPISQP 405
Score = 29.3 bits (64), Expect = 2.4
Identities = 13/41 (31%), Positives = 16/41 (38%)
Frame = +1
Query: 666 KAEGHNKSTCKLPPPPPQPEPGTQPPATQFPTSQPTSDHAP 706
K + S +P PP P P PP T P P+ P
Sbjct: 91 KTPSPSYSPPNVPSPPKAPSPNNHPPYTPTPPKTPSPTSQP 213
Score = 28.9 bits (63), Expect = 3.1
Identities = 14/34 (41%), Positives = 17/34 (49%), Gaps = 6/34 (17%)
Frame = +1
Query: 677 LPPPPPQPEPGTQPP------ATQFPTSQPTSDH 704
+P PP P +QPP T PTSQP + H
Sbjct: 460 IPSPPNSSSPTSQPPNTPSPPKTPSPTSQPPNTH 561
Score = 28.1 bits (61), Expect = 5.3
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +1
Query: 677 LPPPPPQPEPGTQPPATQFPTSQPTSDHAP 706
+P PP P P +QPP P S P+ P
Sbjct: 220 IPLPPKTPSPISQPPHVPTPPSTPSPISQP 309
Score = 27.7 bits (60), Expect = 6.9
Identities = 15/38 (39%), Positives = 15/38 (39%)
Frame = +1
Query: 676 KLPPPPPQPEPGTQPPATQFPTSQPTSDHAPTTQVSAT 713
K P P QP PP T P SQP P S T
Sbjct: 331 KTPSPTSQPPHTPTPPNTPSPISQPPYTPTPPKTPSPT 444
>TC9034
Length = 583
Score = 37.0 bits (84), Expect = 0.011
Identities = 16/56 (28%), Positives = 28/56 (49%)
Frame = +1
Query: 621 YTDLQPPPIKRQPGRPKKNRRKDVDEKRDEQQLKKAKYGMKCSRCKAEGHNKSTCK 676
Y + P +KR PG + NR++ V E + + +KC+ C+ GH+ C+
Sbjct: 25 YGKIDSPTLKRLPGWERINRKRGVTEGPTVSHEARRSHRVKCANCEEFGHDSWECQ 192
>AV421977
Length = 535
Score = 37.0 bits (84), Expect = 0.011
Identities = 22/64 (34%), Positives = 33/64 (51%)
Frame = +2
Query: 676 KLPPPPPQPEPGTQPPATQFPTSQPTSDHAPTTQVSATQASASQVSTTQFVAAKVSSGTQ 735
+LPP PP P P + P+T+ P + P + +AT SA + + AA+ +S T
Sbjct: 230 RLPPLPPPPPPSSTSPSTKTPAASPPPPTKASASTTAT-PSARFSAVSSAPAAESASSTC 406
Query: 736 SVAA 739
S AA
Sbjct: 407 SSAA 418
>TC17328 weakly similar to UP|Q9FGH3 (Q9FGH3) Dihydroflavonol
4-reductase-like (Cinnamoyl-CoA reductase-like protein),
partial (21%)
Length = 479
Score = 37.0 bits (84), Expect = 0.011
Identities = 19/47 (40%), Positives = 25/47 (52%), Gaps = 5/47 (10%)
Frame = +1
Query: 677 LPPPPPQPEPGTQPPATQ-----FPTSQPTSDHAPTTQVSATQASAS 718
+PPP P P P T P+T+ P+S PTS P + +T A AS
Sbjct: 10 MPPPSPPPTPPTSSPSTRKPIPASPSSPPTSSTPPPSPAPSTTAPAS 150
>TC16883 similar to UP|Q9STI6 (Q9STI6) Nucleotide sugar epimerase-like
protein, partial (24%)
Length = 602
Score = 36.6 bits (83), Expect = 0.015
Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 9/71 (12%)
Frame = +1
Query: 678 PPPPPQPEPGT---------QPPATQFPTSQPTSDHAPTTQVSATQASASQVSTTQFVAA 728
PPPP +P PG PPA P P+S AP +A S + T A+
Sbjct: 361 PPPPTKPAPGAAPTGKNASPNPPAAVPPPPSPSSSPAPPASSAAMSPSP*SAAATVSSAS 540
Query: 729 KVSSGTQSVAA 739
+S+ T ++ +
Sbjct: 541 TISTATTTLTS 573
Score = 30.4 bits (67), Expect = 1.1
Identities = 16/53 (30%), Positives = 24/53 (45%)
Frame = +1
Query: 679 PPPPQPEPGTQPPATQFPTSQPTSDHAPTTQVSATQASASQVSTTQFVAAKVS 731
PPPP P PPA+ S A T ++T ++A+ T+ +A S
Sbjct: 439 PPPPSPSSSPAPPASSAAMSPSP*SAAATVSSASTISTATTTLTSNALARSFS 597
>TC11455 similar to UP|Q9ZUS8 (Q9ZUS8) At2g37380 protein, partial (10%)
Length = 575
Score = 36.6 bits (83), Expect = 0.015
Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 5/62 (8%)
Frame = +2
Query: 678 PPPPPQPEPGTQPPATQFP-----TSQPTSDHAPTTQVSATQASASQVSTTQFVAAKVSS 732
PPPPP P P PP + P S TS +PT A S S++ F + ++
Sbjct: 293 PPPPPHPPPHPPPPPLETPLAAAHPSTATSPSSPTATPPAPAPSQRTTSSSDFTSTTATT 472
Query: 733 GT 734
T
Sbjct: 473 TT 478
>TC14729 homologue to UP|Q8W590 (Q8W590) At2g32080/F22D22.17, partial (51%)
Length = 749
Score = 36.2 bits (82), Expect = 0.019
Identities = 17/43 (39%), Positives = 22/43 (50%)
Frame = -2
Query: 655 KAKYGMKCSRCKAEGHNKSTCKLPPPPPQPEPGTQPPATQFPT 697
++K CS C H ST + PPPPP P PP +FP+
Sbjct: 367 RSK*NSLCSTCNVL-HRSSTSEPPPPPPPPPLPPPPPPPEFPS 242
>TC16717 weakly similar to UP|Q41419 (Q41419) Sucrolytic enzyme/ferredoxin
homolog protein, partial (34%)
Length = 435
Score = 36.2 bits (82), Expect = 0.019
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = +1
Query: 679 PPPPQPEPGTQPPATQFPTSQPTSDHAPTTQVSATQASASQVS 721
PP P P P T P A+ P S AP+T +AT +SA++ +
Sbjct: 31 PPTPSPPPATPPTASPARRCTPRSSPAPSTLTTATFSSATRAT 159
>TC14982 similar to UP|Q9FPI2 (Q9FPI2) At1g17620, partial (32%)
Length = 1036
Score = 36.2 bits (82), Expect = 0.019
Identities = 18/54 (33%), Positives = 26/54 (47%)
Frame = +3
Query: 671 NKSTCKLPPPPPQPEPGTQPPATQFPTSQPTSDHAPTTQVSATQASASQVSTTQ 724
N T PPP P P T P Q PT + + H+PT + + + A+ S T+
Sbjct: 315 NSPTSTSPPPQPSPPNSTSPSPPQTPTRK--TSHSPTYPLPSPYSPATSTSATE 470
Score = 32.7 bits (73), Expect = 0.21
Identities = 16/42 (38%), Positives = 21/42 (49%)
Frame = +3
Query: 677 LPPPPPQPEPGTQPPATQFPTSQPTSDHAPTTQVSATQASAS 718
LPP PP P+ PP P +P S APT ++A S +
Sbjct: 48 LPPKPPPPQTAPPPPTQLSPPQRPNST-APTALLTALNPSTA 170
Score = 29.6 bits (65), Expect = 1.8
Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 5/63 (7%)
Frame = +3
Query: 678 PPPPPQPEPGTQPPATQFPTSQP-----TSDHAPTTQVSATQASASQVSTTQFVAAKVSS 732
P PP P P + P + P QP TS P T T S + + + A +S
Sbjct: 282 PTTPPSPSPPSNSPTSTSPPPQPSPPNSTSPSPPQTPTRKTSHSPTYPLPSPYSPATSTS 461
Query: 733 GTQ 735
T+
Sbjct: 462 ATE 470
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.342 0.148 0.499
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,896,594
Number of Sequences: 28460
Number of extensions: 258384
Number of successful extensions: 7564
Number of sequences better than 10.0: 324
Number of HSP's better than 10.0 without gapping: 4284
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6148
length of query: 739
length of database: 4,897,600
effective HSP length: 97
effective length of query: 642
effective length of database: 2,136,980
effective search space: 1371941160
effective search space used: 1371941160
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (22.0 bits)
S2: 59 (27.3 bits)
Medicago: description of AC122730.8