TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC122729.6 + phase: 0 /pseudo
         (247 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP062078                                                               29  0.66
BP069996                                                               28  1.5
TC14415 similar to UP|O04237 (O04237) Transcription factor, part...    27  4.3
AV426991                                                               26  5.6
TC14858 homologue to UP|NUIM_SOLTU (P80269) NADH-ubiquinone oxid...    26  5.6
AV772698                                                               26  5.6
AV780063                                                               26  7.3
CB828471                                                               25  9.5
BP054471                                                               25  9.5

>BP062078 
          Length = 419

 Score = 29.3 bits (64), Expect = 0.66
 Identities = 28/104 (26%), Positives = 45/104 (42%), Gaps = 2/104 (1%)
 Frame = -1

Query: 32  EEEREDIYESFEDETLEKPIYDEEYVGADICEVFDEEGNIDPIYDENGLDDIHEAFEKEE 91
           ++E ++  E FE E       ++E V  D      E  NID  +   G D   E +E+  
Sbjct: 380 DDENDEFEEDFETELNGGKHEEDEEVEEDA-----ENENIDNSWSIGG-DIRMEKYERSR 219

Query: 92  HN--EPIYDEEYVLAEYGEYLETKKRFQTSTNKDMFLMSSSITK 133
               E  ++   +L  +GE L       TS + D+  +S S+TK
Sbjct: 218 GRCQEGDHENXELLVNWGEPLRVALALATS*SSDLDSLSVSVTK 87


>BP069996 
          Length = 511

 Score = 28.1 bits (61), Expect = 1.5
 Identities = 12/31 (38%), Positives = 19/31 (60%)
 Frame = -2

Query: 86  AFEKEEHNEPIYDEEYVLAEYGEYLETKKRF 116
           +F  E H  PIY E  + + +G YL+ KK++
Sbjct: 246 SFWAEVHYNPIYPEGELPSSHGSYLKKKKKW 154


>TC14415 similar to UP|O04237 (O04237) Transcription factor, partial (83%)
          Length = 1666

 Score = 26.6 bits (57), Expect = 4.3
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = +2

Query: 66  DEEGNIDPIYDENGLDDIHEAFEKEEHNEPIYDEEYVLAEYGEYLETKKR 115
           DE+  ++ + D N     +E  EKE       D+E  L EY + LE K++
Sbjct: 845 DEKPAVEDVADGNKESSANENEEKEPE-----DKEMTLEEYEKVLEEKRK 979


>AV426991 
          Length = 429

 Score = 26.2 bits (56), Expect = 5.6
 Identities = 14/52 (26%), Positives = 24/52 (45%)
 Frame = -1

Query: 4   CQGYGHIAIDCVNYKAVTIVNREINNIFEEEREDIYESFEDETLEKPIYDEE 55
           C  + H   D V+ K V + + E+NNI  +    +  +    TLE+   D +
Sbjct: 378 CSDFWHSGSDTVSQKMVFLEHSELNNIGRDYGVVVPVAVASSTLEREREDND 223


>TC14858 homologue to UP|NUIM_SOLTU (P80269) NADH-ubiquinone oxidoreductase
           23 kDa subunit, mitochondrial precursor   (Complex
           I-23KD) (CI-23KD) (Complex I-28.5KD) (CI-28.5KD) ,
           partial (93%)
          Length = 1106

 Score = 26.2 bits (56), Expect = 5.6
 Identities = 21/74 (28%), Positives = 31/74 (41%)
 Frame = +2

Query: 40  ESFEDETLEKPIYDEEYVGADICEVFDEEGNIDPIYDENGLDDIHEAFEKEEHNEPIYDE 99
           E  ED +     YD +      C    E   +D I +    +     F  E H E +YD+
Sbjct: 494 EEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFE-----FVTETHEELLYDQ 658

Query: 100 EYVLAEYGEYLETK 113
           E +L E G+  ET+
Sbjct: 659 EKLL-ENGDRWETE 697


>AV772698 
          Length = 521

 Score = 26.2 bits (56), Expect = 5.6
 Identities = 15/35 (42%), Positives = 20/35 (56%), Gaps = 1/35 (2%)
 Frame = +3

Query: 74  IYDEN-GLDDIHEAFEKEEHNEPIYDEEYVLAEYG 107
           +YD N G+  +  ++ K E NEP Y EEY    YG
Sbjct: 96  VYDPNYGMSQLLISYSKLEFNEPEY-EEYDPTPYG 197


>AV780063 
          Length = 506

 Score = 25.8 bits (55), Expect = 7.3
 Identities = 10/17 (58%), Positives = 14/17 (81%)
 Frame = -1

Query: 163 STRITR*KYLNTPLSHF 179
           S RI+R +YL+TP+ HF
Sbjct: 428 SCRISRTRYLHTPIPHF 378


>CB828471 
          Length = 525

 Score = 25.4 bits (54), Expect = 9.5
 Identities = 14/53 (26%), Positives = 26/53 (48%), Gaps = 3/53 (5%)
 Frame = +2

Query: 186 KKMYGVILFQWILATLILGCHGNMIVVHYMMVMPTST---LL*NMVLKSSWHV 235
           KKM G  L   +L  ++  CH + IV   ++V+   T   ++  M++   W +
Sbjct: 308 KKMKGHDLLSNVLLLIVTTCHPSPIVAALLLVLTMMTCP*MMFTMLILIRWRI 466


>BP054471 
          Length = 493

 Score = 25.4 bits (54), Expect = 9.5
 Identities = 11/16 (68%), Positives = 13/16 (80%)
 Frame = +2

Query: 33  EEREDIYESFEDETLE 48
           EEREDI+E+F DE  E
Sbjct: 182 EEREDIWETF*DENRE 229


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.331    0.144    0.442 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,052,003
Number of Sequences: 28460
Number of extensions: 51135
Number of successful extensions: 279
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 272
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 277
length of query: 247
length of database: 4,897,600
effective HSP length: 88
effective length of query: 159
effective length of database: 2,393,120
effective search space: 380506080
effective search space used: 380506080
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 54 (25.4 bits)