BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC122729.3 + phase: 0
(404 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC8398 weakly similar to UP|Q84KK1 (Q84KK1) S haplotype-specific... 87 1e-25
BI419994 91 4e-19
BP049904 86 8e-18
TC19187 79 1e-15
BP038236 74 6e-14
AV777665 73 7e-14
AW720409 68 3e-12
AV768207 61 3e-10
AV427033 61 3e-10
AV423520 61 4e-10
BP052653 59 1e-09
BG662160 58 2e-09
TC9055 58 2e-09
AV765936 57 4e-09
BP051299 55 3e-08
BP076687 55 3e-08
BP079620 55 3e-08
AV413010 52 2e-07
AV414925 52 2e-07
TC18730 similar to UP|Q963J2 (Q963J2) Voltage-dependent calcium ... 50 9e-07
>TC8398 weakly similar to UP|Q84KK1 (Q84KK1) S haplotype-specific F-box
protein a, partial (9%)
Length = 1602
Score = 87.0 bits (214), Expect(2) = 1e-25
Identities = 69/212 (32%), Positives = 99/212 (46%), Gaps = 12/212 (5%)
Frame = +1
Query: 205 SQVRVHTLGTNFWRRIPNFPSNIM-----GLPNGYVGKFVSGTINWAIENQKNYDSWVIL 259
S V+ +G WRRI +FP G G +++GTINW + YD I+
Sbjct: 727 SVANVYNMGDGCWRRIQSFPDFTREHWGRGTAPDQNGVYLNGTINWVLRLNIAYD---II 897
Query: 260 SLDLGNESYQEISRPDFGLDDPVHIFTL----GVSKDCLCVLVYT-ETLLGIWVMKDYGN 314
SLDLG+E +S P F P ++ L GV KD LCVL + IW M ++G
Sbjct: 898 SLDLGSEVCSRLSLPCFPPPGPKCVYDLPPILGVLKDSLCVLHNNNDKTFVIWKMNEFGA 1077
Query: 315 KNSWTKLFAVPYAKVGYHGFGFVDLHYISEEDDQVFLHFCSKVYVYNYKNSTVKTLDIQG 374
SWT LF + K + F + E+D+V L +K +YN+ + T K D
Sbjct: 1078HESWTPLFNFDFKKEDLYRFD----KFFFSENDEVLLMTLTKQVLYNHSDITFKFND--- 1236
Query: 375 QPSILYNSSRVYFESLYDSSGV--YVESLISP 404
RV+ ++D + + YVESL+SP
Sbjct: 1237---------RVH-NYIHDWNNIENYVESLVSP 1302
Score = 46.2 bits (108), Expect(2) = 1e-25
Identities = 53/199 (26%), Positives = 77/199 (38%), Gaps = 49/199 (24%)
Frame = +3
Query: 39 DLFLEILYRLPVKSLLVLKCVSKSLNSLISDPKFVKHHLHLSQTR------PYHLLIRNS 92
+L EIL LPVKSL+ +CV KS IS+P+F+K HL S + +++
Sbjct: 87 ELIWEILSLLPVKSLVRFRCVCKSWKLTISNPQFMKLHLRRSSAKAAADFADSQVVVMTK 266
Query: 93 ELLLVDSRLPSVTAIIPDTT---------HNFR---------------LNPSDN------ 122
+ S L S I+ D T H R L S N
Sbjct: 267 RDHIAHSPLLSKFHIVHDETFTADEPWPVHALREPFNQPHVSICYAPSLFSSQNNDKLKG 446
Query: 123 HPIMIDSCDGIICFENRNDNHVDLVV------WNPCTGKFKILPPLENIPNGKTHTL--- 173
H +I +C+G++ N N + NP T + P ++ + H+L
Sbjct: 447 HCRLIGACNGLVSVINEGYNSAESATKLSCCNLNPATKLRSQVSPTLSLCYKQFHSLIHS 626
Query: 174 ----YSIGYDRFVDNYKVV 188
+ GYD D YKVV
Sbjct: 627 VFRIFGFGYDPLNDTYKVV 683
>BI419994
Length = 549
Score = 90.5 bits (223), Expect = 4e-19
Identities = 62/177 (35%), Positives = 89/177 (50%), Gaps = 12/177 (6%)
Frame = +2
Query: 24 QNSSDPFGLFALLWLDLFLEILYRLPVKSLLVLKCVSKSLNSLISDPKFVKHHLHLSQTR 83
Q S++ LF+ L +L L+IL RLPV+SLL K V KS LISDP+F K H +L+ +
Sbjct: 11 QTSTESLSLFSHLPDELILQILLRLPVRSLLRFKTVCKSWRYLISDPQFTKSHFNLAASP 190
Query: 84 PYHLLIRNS-----ELLLVDSRLPSVTAII-------PDTTHNFRLNPSDNHPIMIDSCD 131
+ + + N+ E L DS L ++++ P N R S ++ SC
Sbjct: 191 THRIFLNNTNGF*IESLDTDSSLHDESSLVHLKFPLAPPHPDNHRFGSSVTGLKVLGSCR 370
Query: 132 GIICFENRNDNHVDLVVWNPCTGKFKILPPLENIPNGKTHTLYSIGYDRFVDNYKVV 188
G + N N +VVWNP TG + +P + + LY IGYD D+Y VV
Sbjct: 371 GFVLLANHQGN---VVVWNPSTGVRRRVPEWCSYLASQCEFLYGIGYDESNDDYLVV 532
>BP049904
Length = 541
Score = 86.3 bits (212), Expect = 8e-18
Identities = 47/120 (39%), Positives = 71/120 (59%), Gaps = 5/120 (4%)
Frame = -3
Query: 254 DSWVILSLDLGNESYQEISRPDFGLDDPVHIFTLGVSKDCLCVLVYTETLLGIWVMKDYG 313
D+ I SLDLG E+Y+E +PD+G++ I L V++DCLC+L ++ IWVMK+YG
Sbjct: 533 DTAGIFSLDLGKETYEEFLQPDYGIEVDYKI--LDVTRDCLCILANSD----IWVMKEYG 372
Query: 314 NKNSWTKLFA-----VPYAKVGYHGFGFVDLHYISEEDDQVFLHFCSKVYVYNYKNSTVK 368
N SWTKLF+ + + ++ F L + E D+ + C VYVY++KN T +
Sbjct: 371 NSESWTKLFSFSSNFLSRLPLDWYQFKKHHLLCVLENDESLVYPGCRNVYVYSHKNDTFR 192
>TC19187
Length = 632
Score = 79.0 bits (193), Expect = 1e-15
Identities = 42/92 (45%), Positives = 56/92 (60%), Gaps = 2/92 (2%)
Frame = +1
Query: 236 GKFVSGTINWAIENQKNYDS-WVILSLDLGNESYQEISRPDFGLDDPVHIFTLGVSKDCL 294
GKFVSGT+NWA S W+I+SLDL E+Y+EI PD+ ++ TL V K CL
Sbjct: 7 GKFVSGTLNWAANYSVGVSSLWIIVSLDLQKETYKEILPPDYEKEE-CSTPTLSVLKGCL 183
Query: 295 CVLV-YTETLLGIWVMKDYGNKNSWTKLFAVP 325
C+ + T +W+MKDYG + SW KL +P
Sbjct: 184 CMNYDHKRTDFVVWMMKDYGVRESWVKLVTIP 279
>BP038236
Length = 515
Score = 73.6 bits (179), Expect = 6e-14
Identities = 47/116 (40%), Positives = 66/116 (56%)
Frame = -1
Query: 289 VSKDCLCVLVYTETLLGIWVMKDYGNKNSWTKLFAVPYAKVGYHGFGFVDLHYISEEDDQ 348
V +DCL +L + +W+MK+YGN+ SWTKLF+V AK +H F LH E+DQ
Sbjct: 515 VLRDCLSMLSGNYQVCDVWLMKEYGNQQSWTKLFSV--AKQLFHHQVFDTLHIF--EEDQ 348
Query: 349 VFLHFCSKVYVYNYKNSTVKTLDIQGQPSILYNSSRVYFESLYDSSGVYVESLISP 404
+ L SK+Y+Y+ +++T+KT IQ + GVYVESLISP
Sbjct: 347 LLLVCGSKLYLYHPRDNTLKTHQIQNITG-------------WVVPGVYVESLISP 219
>AV777665
Length = 425
Score = 73.2 bits (178), Expect = 7e-14
Identities = 45/118 (38%), Positives = 67/118 (56%), Gaps = 18/118 (15%)
Frame = +1
Query: 262 DLGNESYQEISRPDFGLDDPVHI-------FTLGVSKDCLCVLVYT------ETLLGIWV 308
DLG ES QEIS+P++G+D V + L V +DCL ++V+ E +WV
Sbjct: 1 DLGEESCQEISQPNYGVDSSVFVDHPDMFCLKLEVLRDCLSIIVHVRDFEDNEDYEYLWV 180
Query: 309 MKDYGNKNSWTKLFAVPYAKVG----YHGFG-FVDLHYISEEDDQVFLHFCSKVYVYN 361
MK+YGN+ SWTKLF VP+ K+ Y F V + S+ DD +F+ + S + V++
Sbjct: 181 MKEYGNRESWTKLFKVPHMKLSIRPWYGSFARIVCILKDSKGDDTLFMRWGSTLAVHS 354
>AW720409
Length = 575
Score = 67.8 bits (164), Expect = 3e-12
Identities = 52/161 (32%), Positives = 79/161 (48%), Gaps = 16/161 (9%)
Frame = +3
Query: 35 LLWLDLFLEILYRLPVKSLLVLKCVSKSLNSLI-SDPKFVKHHLHLSQTRPYHLLIRNSE 93
+L +L++EIL LPVK+L+ CVSKS SLI D F K HL S +++ +
Sbjct: 90 VLPFELWIEILSWLPVKTLMRFSCVSKSWKSLIYQDRDFKKLHLDRSPKNNNQVILTLQK 269
Query: 94 LL-------------LVDSRLPSVTAIIPDTTHNFR-LNPSDNHPIMIDSCDGIICFENR 139
L L+ + PS ++II D + DN+ I SC+G++C
Sbjct: 270 PLFSGRTFFPFPVRRLLQDQEPSSSSIIDDIPFEEEDEDEEDNYHDTIGSCNGLVCLYGI 449
Query: 140 NDNHVDLVVWNPCTG-KFKILPPLENIPNGKTHTLYSIGYD 179
ND+ + +WNP T +F PPL+ + H ++ GYD
Sbjct: 450 NDHGLWFRLWNPATRFRFHKSPPLDAVIGSTLH--FAFGYD 566
>AV768207
Length = 374
Score = 61.2 bits (147), Expect = 3e-10
Identities = 36/61 (59%), Positives = 42/61 (68%), Gaps = 3/61 (4%)
Frame = +1
Query: 25 NSSDPFG---LFALLWLDLFLEILYRLPVKSLLVLKCVSKSLNSLISDPKFVKHHLHLSQ 81
+SS+P G F L +L +EIL RLPVKSLL L+CV KS SLISDPKF K+HL S
Sbjct: 31 SSSNPPGDSPPFPTLPFELGVEILCRLPVKSLLQLRCVCKSWKSLISDPKFAKNHLRCSS 210
Query: 82 T 82
T
Sbjct: 211T 213
>AV427033
Length = 420
Score = 61.2 bits (147), Expect = 3e-10
Identities = 30/42 (71%), Positives = 33/42 (78%)
Frame = +1
Query: 39 DLFLEILYRLPVKSLLVLKCVSKSLNSLISDPKFVKHHLHLS 80
DL +EIL RLPV SLL +CV KS NSLISDPKF K+HLH S
Sbjct: 133 DLVVEILCRLPVNSLLQFRCVCKSWNSLISDPKFAKNHLHCS 258
>AV423520
Length = 468
Score = 60.8 bits (146), Expect = 4e-10
Identities = 45/94 (47%), Positives = 53/94 (55%), Gaps = 11/94 (11%)
Frame = +3
Query: 39 DLFLEILYRLPVKSLLVLKCVSKSLNSLIS-DPKFVKHHLHLSQ---TRPYHLLIRNSEL 94
+L +EIL RLPVKSLL +CV KS NSLIS DPKF + HL S TR + + +E
Sbjct: 174 ELVVEILCRLPVKSLLQFRCVCKSWNSLISGDPKFARKHLRCSPKDFTRHHLIFGSTNEF 353
Query: 95 LLVDSRLPSV----TAIIPDTTHNFRL---NPSD 121
L S L SV AI P T + L NPSD
Sbjct: 354 LFTSSPLLSVFDDAAAIAPSTQFDHPLNNPNPSD 455
>BP052653
Length = 552
Score = 59.3 bits (142), Expect = 1e-09
Identities = 48/144 (33%), Positives = 68/144 (46%), Gaps = 5/144 (3%)
Frame = +1
Query: 13 RHNVVSTTVRKQNSSDPFGLFALLWLDLFLEILYRLPVKSLLVLKCVSKSLNSLISDPKF 72
RHN ++ S + L ++L DL ++IL RLPV+SLL K V KS SLISDP+F
Sbjct: 136 RHNC------RRRSIESLNLSSILPHDLIVQILLRLPVRSLLRFKSVCKSWLSLISDPQF 297
Query: 73 VKHHLHLSQTRPYHLLIRNSELLLVDSRLPSVTAIIPDTTHNFRLN-PSDNHPI----MI 127
K H L+ + L++ + L V A + D + L P + I ++
Sbjct: 298 GKSHFDLAAAPTHRCLVKINNFKLESL---DVDASVLDQSSEVNLKFPYTGYVIFHIQIL 468
Query: 128 DSCDGIICFENRNDNHVDLVVWNP 151
SC G I D +VWNP
Sbjct: 469 GSCRGFIALVRGG----DAIVWNP 528
>BG662160
Length = 445
Score = 58.2 bits (139), Expect = 2e-09
Identities = 44/125 (35%), Positives = 64/125 (51%), Gaps = 12/125 (9%)
Frame = +2
Query: 39 DLFLEILYRLPVKSLLVLKCVSKSLNSLISDPKFVKHHLHLSQTRPYHLLIRNSELLLVD 98
+L LEIL LPVKSL+ +CVSKS S+ISD +F+K HLH S + RN++ +
Sbjct: 32 ELRLEILSWLPVKSLVRFRCVSKSWKSIISDSQFIKLHLHRSSS-----TTRNTDFAYLQ 196
Query: 99 SRLPS-------VTAIIPDTTHNFRLNPSDNHPIMIDSCDGIICFE----NRNDNHVDLV 147
S + S T IPD ++F +C+G++C +R D + V
Sbjct: 197 SLITSPRKSRSASTIAIPD-DYDF-----------CGTCNGLVCLHSSKYDRKDKYTSHV 340
Query: 148 -VWNP 151
+WNP
Sbjct: 341 RLWNP 355
>TC9055
Length = 577
Score = 58.2 bits (139), Expect = 2e-09
Identities = 45/169 (26%), Positives = 75/169 (43%), Gaps = 5/169 (2%)
Frame = +2
Query: 241 GTINWAIENQKNYDSWVILSLDLGNESYQEISRPDFGLDDP-VHIFTLGVSKDCLCVLV- 298
G +NW + ++ VI+SLD+ E+Y+ +S P + P I LG +CLC+
Sbjct: 2 GCVNWLANKFEPFEQLVIVSLDMRQEAYRLLSLPQGTSELPSAEIQVLG---NCLCLFYD 172
Query: 299 YTETLLGIWVMKDYGNKNSWTKLFAVPYAKVGYHGFGFVDLHYISEEDDQVFLHFCSK-- 356
+ T W M +YG SWT L + Y + + +++ I D K
Sbjct: 173 FKRTHFVAWKMSEYGLPESWTPLLTISYEHLRWDHRFYLNQWLICLCGDGHIFMLAKKQK 352
Query: 357 -VYVYNYKNSTVKTLDIQGQPSILYNSSRVYFESLYDSSGVYVESLISP 404
V +YN +++VK +++ L+ + YVESL+SP
Sbjct: 353 LVIIYNLSDNSVKYVELAS-------------NKLWLDANDYVESLVSP 460
>AV765936
Length = 447
Score = 57.4 bits (137), Expect = 4e-09
Identities = 38/99 (38%), Positives = 52/99 (52%)
Frame = -2
Query: 306 IWVMKDYGNKNSWTKLFAVPYAKVGYHGFGFVDLHYISEEDDQVFLHFCSKVYVYNYKNS 365
IW+MK+YG+K SWTKLF VP F F +IS+ED+ + ++ VY+YN +++
Sbjct: 410 IWLMKEYGSKESWTKLFTVPNPD---GSFSFTKPFHISKEDEVLVVN-DGIVYLYNSRDN 243
Query: 366 TVKTLDIQGQPSILYNSSRVYFESLYDSSGVYVESLISP 404
T K IQ + VYVESLISP
Sbjct: 242 TFKIFPIQNINDWIV-------------PVVYVESLISP 165
>BP051299
Length = 539
Score = 54.7 bits (130), Expect = 3e-08
Identities = 51/191 (26%), Positives = 90/191 (46%), Gaps = 15/191 (7%)
Frame = +2
Query: 39 DLFLEILYRLPVKSLLVLKCVSKSLNSLISDPKFVKHHLHLSQTRPYHLLIRNSELLLVD 98
+++ EIL+RLP K+L+ V KS SLI+ F+ H + S P LL++ L D
Sbjct: 14 EIWAEILHRLPPKTLVKCTSVCKSWRSLITSTSFISLHRNHS---PSSLLLQ-----LCD 169
Query: 99 SRLPSVTAIIPDTTH--------------NFRLNPSDNHPI-MIDSCDGIICFENRNDNH 143
R IP+ H + RL S N ++ C G++C + +N
Sbjct: 170 ER------AIPNFIHYSLRRDDPFLSESSSLRLPSSFNREFSVVGICHGLVCITS-TENC 328
Query: 144 VDLVVWNPCTGKFKILPPLENIPNGKTHTLYSIGYDRFVDNYKVVAFSCHRQINKSYKYC 203
DL++ NP LP + P+ + ++ + G+D ++YKV+ +C ++ Y
Sbjct: 329 RDLIICNPSLRLHITLPEPSDYPSLHSASV-AFGFDSRNNDYKVIRIACMHD-DERYGVS 502
Query: 204 NSQVRVHTLGT 214
+ +V V++L +
Sbjct: 503 SPEVEVYSLAS 535
>BP076687
Length = 389
Score = 54.7 bits (130), Expect = 3e-08
Identities = 45/127 (35%), Positives = 60/127 (46%), Gaps = 11/127 (8%)
Frame = -3
Query: 39 DLFLEILYRLPVKSLLVLKCVSKSLNSLISDPKFVKHHLHLSQTRPYHLL--IRNSELLL 96
+L +IL RLPV+SLL K V KS SLISDPKF K H L+ + Y L +SE+
Sbjct: 372 ELIPQILLRLPVRSLLRFKSVCKSWLSLISDPKFGKSHYDLAASPTYRCLTIANDSEIGS 193
Query: 97 VDSRLPSVTAIIPDTTHNFRLNP-------SDNHPIMIDSCDG--IICFENRNDNHVDLV 147
+D P + + L P S N + C G I+ +E D+
Sbjct: 192 IDVDAPLLNYESSVVKLKYPLPPPCKLSLFSGNTVWFLGYCRGFVIVVYEQG-----DVF 28
Query: 148 VWNPCTG 154
+WNP TG
Sbjct: 27 LWNPSTG 7
>BP079620
Length = 355
Score = 54.7 bits (130), Expect = 3e-08
Identities = 35/103 (33%), Positives = 57/103 (54%), Gaps = 4/103 (3%)
Frame = -2
Query: 306 IWVMKDYGNKNSWTKLFAVP----YAKVGYHGFGFVDLHYISEEDDQVFLHFCSKVYVYN 361
+WVMK+YGN SWTKLF +P ++K+ Y+ G + + Y+SE+ + YN
Sbjct: 348 VWVMKEYGNNESWTKLFRLPPSNSFSKIPYY-LGNLAV-YVSED--------YRSLLGYN 199
Query: 362 YKNSTVKTLDIQGQPSILYNSSRVYFESLYDSSGVYVESLISP 404
Y+N T ++ D++ +P + + +Y V +ESLISP
Sbjct: 198 YENGTFRSFDLENKPGKI--------KDMY----VEIESLISP 106
>AV413010
Length = 416
Score = 51.6 bits (122), Expect = 2e-07
Identities = 31/92 (33%), Positives = 56/92 (60%), Gaps = 5/92 (5%)
Frame = +3
Query: 22 RKQNSSDPFGLFALLWLDLFLEILYRLPVKSLLVLKCVSKSLNSLISDPKFVKHHLHLSQ 81
R+ + + L ++L +L ++IL +LPV SLL K VSKS S IS+P+F K H +L+
Sbjct: 54 RRSCTEENPSLSSILPDELIIQILLQLPVTSLLRFKSVSKSWFSQISNPQFAKSHFNLAA 233
Query: 82 TRPYHLLIRNS-----ELLLVDSRLPSVTAII 108
+ ++L ++++ + L ++S P TA++
Sbjct: 234 SPTHYLFLKSTDEFQFQTLDIESSPPFTTAVL 329
>AV414925
Length = 414
Score = 51.6 bits (122), Expect = 2e-07
Identities = 39/109 (35%), Positives = 58/109 (52%), Gaps = 5/109 (4%)
Frame = +1
Query: 38 LDLFLEILYRLPVKSLLVLKCVSKSLNSLISDPKFVKHHLHLSQTRP----YHLLIR-NS 92
+++ +IL RLPV SLL + +SKS SLI F+K HL+ S T P +L++R N+
Sbjct: 103 VEVIADILSRLPVTSLLRFRSISKSWRSLIDSKHFMKLHLNNSLTNPNPNLTNLILRHNT 282
Query: 93 ELLLVDSRLPSVTAIIPDTTHNFRLNPSDNHPIMIDSCDGIICFENRND 141
+L D PS+ A + N L N ++ SC G++C N D
Sbjct: 283 DLYRAD--FPSIGAAV---NLNHPLMCYSNRINILGSCHGLLCICNVAD 414
>TC18730 similar to UP|Q963J2 (Q963J2) Voltage-dependent calcium channel
alpha13 subunit (Fragment), partial (5%)
Length = 515
Score = 49.7 bits (117), Expect = 9e-07
Identities = 34/88 (38%), Positives = 46/88 (51%), Gaps = 2/88 (2%)
Frame = +2
Query: 33 FALLWLDLFLEILYRLPVKSLLVLKCVSKSLNSLISDPKFVKHHLHLSQTRPYHLLI--R 90
F + +L L IL RLPV+SLL K V KS SLISDPKF H +S + + L
Sbjct: 212 FPISLKELILHILLRLPVRSLLRFKSVCKSWLSLISDPKFGXSHYDISASPTHRCLTXGN 391
Query: 91 NSELLLVDSRLPSVTAIIPDTTHNFRLN 118
+SE+ +D S+ I+ FR +
Sbjct: 392 DSEIESIDVDASSLPVILL*LASXFRFH 475
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.322 0.140 0.438
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,774,196
Number of Sequences: 28460
Number of extensions: 145944
Number of successful extensions: 774
Number of sequences better than 10.0: 81
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 755
length of query: 404
length of database: 4,897,600
effective HSP length: 92
effective length of query: 312
effective length of database: 2,279,280
effective search space: 711135360
effective search space used: 711135360
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)
Medicago: description of AC122729.3