TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC122729.1 - phase: 0 /pseudo
         (119 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

CB826887                                                               28  0.41
AV778022                                                               28  0.53
TC14448 homologue to UP|Q9M531 (Q9M531) Histone H2A, partial (95%)     25  4.5
AV768585                                                               24  7.7

>CB826887 
          Length = 427

 Score = 28.1 bits (61), Expect = 0.41
 Identities = 16/37 (43%), Positives = 23/37 (61%)
 Frame = +1

Query: 81  LDNLENIEVHLEDEDKVILLLCIPKSFESFRRPFSMA 117
           + NL+ + V     +K+I+LLC PKSF  F R F +A
Sbjct: 100 IGNLKRLTVLELSTNKLIILLCFPKSF--FYREF*VA 204


>AV778022 
          Length = 554

 Score = 27.7 bits (60), Expect = 0.53
 Identities = 12/36 (33%), Positives = 25/36 (69%), Gaps = 2/36 (5%)
 Frame = -1

Query: 68  EVK*SHHEEFNKILDNLEN--IEVHLEDEDKVILLL 101
           E + SHH    ++++N  +  +E+HL+ E++++LLL
Sbjct: 548 ETRFSHHPANTRVIEN*YD*LLELHLDGEERLLLLL 441


>TC14448 homologue to UP|Q9M531 (Q9M531) Histone H2A, partial (95%)
          Length = 715

 Score = 24.6 bits (52), Expect = 4.5
 Identities = 12/28 (42%), Positives = 14/28 (49%)
 Frame = -3

Query: 15  SLIVLCLVDKVSIDVKKETTMHGGHVGK 42
           S +   L  K  +DV K TTM  GH  K
Sbjct: 476 SFLSSLLRQKHRVDVGKNTTMSNGHTSK 393


>AV768585 
          Length = 324

 Score = 23.9 bits (50), Expect = 7.7
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -2

Query: 85  ENIEVHLEDEDKVILLLCIPKSFESFRRPFSMAK 118
           EN+ V   DE+K+++L+   K F     PF   K
Sbjct: 215 ENVVVPQMDEEKLVVLIKWLKDFL*MEEPFRYGK 114


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.330    0.144    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,646,505
Number of Sequences: 28460
Number of extensions: 16524
Number of successful extensions: 79
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of query: 119
length of database: 4,897,600
effective HSP length: 79
effective length of query: 40
effective length of database: 2,649,260
effective search space: 105970400
effective search space used: 105970400
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 49 (23.5 bits)