BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC122728.10 + phase: 0
(2239 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BG662087 137 1e-32
BI417841 72 1e-12
BP065719 69 6e-12
TC11573 similar to UP|Q9M6N4 (Q9M6N4) Pol protein integrase regi... 63 6e-10
TC16320 weakly similar to UP|Q84TE0 (Q84TE0) At5g51080, partial ... 59 1e-08
TC18698 57 2e-08
AV427422 55 1e-07
AV410603 53 6e-07
BF177840 48 1e-05
TC18379 similar to UP|Q9SBM1 (Q9SBM1) Hydroxyproline-rich glycop... 36 0.075
AV427333 36 0.075
TC15341 similar to UP|Q9M0H8 (Q9M0H8) Predicted proline-rich pro... 35 0.098
TC14162 similar to UP|OLP1_LYCES (Q41350) Osmotin-like protein p... 35 0.17
AU251550 34 0.22
TC17113 weakly similar to UP|Q9LFU8 (Q9LFU8) Proline-rich protei... 34 0.22
TC15560 similar to SP|Q03173|NDPP_MOUSE NPC derived proline rich... 33 0.37
TC14279 similar to UP|Q09085 (Q09085) Hydroxyproline-rich glycop... 33 0.49
TC14758 similar to UP|O24601 (O24601) Glycine-rich RNA binding p... 33 0.49
TC8786 similar to UP|Q9ZTK7 (Q9ZTK7) CONSTANS-like protein 2, pa... 33 0.64
TC15425 similar to UP|GRP2_PHAVU (P10496) Glycine-rich cell wall... 33 0.64
>BG662087
Length = 373
Score = 137 bits (346), Expect = 1e-32
Identities = 65/119 (54%), Positives = 86/119 (71%)
Frame = +1
Query: 1247 GKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREK 1306
GK RM VD+ DLNKA PKD++PLP ID LVD + +++ S MD +SGY+QIKM P D +K
Sbjct: 16 GKWRMWVDYTDLNKACPKDSYPLPSIDKLVDGASDNELLSLMDAYSGYHQIKMHPSDEDK 195
Query: 1307 TSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSADEEQH 1365
T+F+T +CY+ +PFGL NAGATYQ M +F D + + +EVY+D+MIVKSA H
Sbjct: 196 TAFMTARVNYCYQTIPFGLKNAGATYQXLMDRVFXDXVGRNMEVYLDNMIVKSALRANH 372
>BI417841
Length = 617
Score = 71.6 bits (174), Expect = 1e-12
Identities = 41/136 (30%), Positives = 66/136 (48%), Gaps = 2/136 (1%)
Frame = +1
Query: 1654 NSKWGLVFDGAV--NAYGKGMGAVIVSPQGHHIPFTARILFECTNNMAEYEACIFGIEEA 1711
N L FDG+ N G GAV+ + G + + + TNN AEY I G++ A
Sbjct: 127 NRSCTLEFDGSSKGNPGSAGAGAVLRAEDGSKV-YLREGVGNQTNNQAEYRGLILGLKHA 303
Query: 1712 IDMRIKHLDIYGDSALVINQIKGEWETHHAKLIPYHDYARRLLTYFTKVELHHIPRDENQ 1771
+ +H+++ GDS LV Q++G W+ + + + A+ L + F +++H+PR N
Sbjct: 304 HEQGYQHINVKGDSQLVCKQVEGSWKARNPNIASLCNEAKELKSKFQSFDINHVPRQYNS 483
Query: 1772 MADALATLSSMFRVNH 1787
AD A L H
Sbjct: 484 EADVQANLGVNLPAGH 531
>BP065719
Length = 567
Score = 69.3 bits (168), Expect = 6e-12
Identities = 40/132 (30%), Positives = 72/132 (54%), Gaps = 2/132 (1%)
Frame = +3
Query: 166 VSKVDVPKKFKVPEFDKYNGLTCPQN--HIVKYVRKMGNYKDNDSLMIHYFQDSLMEDAA 223
V + ++P+ +KVP+F K++G + HI +Y + G+ N++L + YF SL ++A
Sbjct: 147 VLESELPRGWKVPKFTKFSGDSGESTVEHIARYQIEAGDLAINENLKMKYFPSSLTKNAF 326
Query: 224 EWYTSLSKDDVHTFDELAAAFKSHYGFNTRLKPNREFLRSLSQKKEESFREYAQRWRGAA 283
W+T+L+ VHT+ +L F + F K + + L S+ +K ES +Y R+R
Sbjct: 327 TWFTTLAPRSVHTWAQLERIFHEQF-FRGECKVSXKDLASVKRKPAESIDDYLNRFRMLK 503
Query: 284 ARITPALDEEEM 295
+R + E E+
Sbjct: 504 SRCFTHVSEHEL 539
>TC11573 similar to UP|Q9M6N4 (Q9M6N4) Pol protein integrase region
(Fragment), partial (10%)
Length = 572
Score = 62.8 bits (151), Expect = 6e-10
Identities = 36/96 (37%), Positives = 49/96 (50%), Gaps = 1/96 (1%)
Frame = +2
Query: 2021 DNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAANKNI-KRIVQKMVTTYKDWHE 2079
+NG + Q C+ I+ SS PQ NG EAANK I K I +++ W +
Sbjct: 8 ENGIQFTSKQTQDFCDGMGIQMRFSSVKHPQTNGQTEAANKVILKGIKRRLYEAEGRWID 187
Query: 2080 MLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEV 2115
LP L Y T +SS TPF L YG + +LP+E+
Sbjct: 188 ELPIVLWSYNTMPQSSIKETPF*LTYGADTMLPVEI 295
>TC16320 weakly similar to UP|Q84TE0 (Q84TE0) At5g51080, partial (11%)
Length = 632
Score = 58.5 bits (140), Expect = 1e-08
Identities = 29/91 (31%), Positives = 44/91 (47%)
Frame = +2
Query: 1701 YEACIFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHAKLIPYHDYARRLLTYFTKV 1760
Y I G++ AI KH+ + GDS LV NQ++G W+ + + A+ L F
Sbjct: 2 YRGLILGLKHAIKEGYKHIQVKGDSMLVCNQVQGLWKIKNQNIASLCSEAKELKNKFLSF 181
Query: 1761 ELHHIPRDENQMADALATLSSMFRVNHWNDV 1791
+++HIPR+ N AD A R +V
Sbjct: 182 KINHIPREYNSEADVQANFGISLRAGQVEEV 274
>TC18698
Length = 808
Score = 57.4 bits (137), Expect = 2e-08
Identities = 31/62 (50%), Positives = 39/62 (62%)
Frame = -2
Query: 1304 REKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSADEE 1363
++KT+ + Y+VMP GL N TYQR M +FH I K VEVYV+DMIVKS+ E
Sbjct: 807 KKKTTLKINRVNYYYQVMPLGLKNI*TTYQRLMDKIFHKQI*KNVEVYVEDMIVKSSQE* 628
Query: 1364 QH 1365
H
Sbjct: 627 FH 622
>AV427422
Length = 417
Score = 55.1 bits (131), Expect = 1e-07
Identities = 33/133 (24%), Positives = 63/133 (46%), Gaps = 2/133 (1%)
Frame = +1
Query: 1970 SNGHRFILVAIDYFTKWVEAASYTN-VTKQVVAKFIKNNIICRYGVPSKIITDNGTNLNN 2028
S G+ +LV +D +K+ + T +V+A ++ +GVP I++D +
Sbjct: 19 SKGYEAVLVVVDRLSKFSHFVPLKHPYTAKVIADIFVREVVRLHGVPLSIVSDRDPLFMS 198
Query: 2029 NVVQALCEEFKIEHHNSSPYRPQMNGAVEAANKNIKRIVQKMVTTY-KDWHEMLPYALHG 2087
N + L + + S+ Y P+ +G E N+ ++ ++ + K W +P+A +
Sbjct: 199 NFWKELFKMQGTKLKMSTAYHPESDGQTEVVNRCLETYLRCFIADQPKSWAHWVPWAEYW 378
Query: 2088 YRTTVRSSTGATP 2100
Y T+ STG TP
Sbjct: 379 YNTSYHVSTGQTP 417
>AV410603
Length = 162
Score = 52.8 bits (125), Expect = 6e-07
Identities = 26/51 (50%), Positives = 34/51 (65%)
Frame = +1
Query: 1264 KDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREKTSFITPWG 1314
KD+FP+P +D L+D S+ FS +D SGY+QI + PEDR KT F T G
Sbjct: 10 KDSFPMPTVDELLDELRGSQFFSKLDLRSGYHQILVKPEDRHKTVFRTHHG 162
>BF177840
Length = 410
Score = 48.1 bits (113), Expect = 1e-05
Identities = 26/101 (25%), Positives = 49/101 (47%), Gaps = 1/101 (0%)
Frame = +2
Query: 2016 SKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAANKNIKRIVQKMVT-TY 2074
+ I++D T ++ + L + + S+ PQ +G E NK + +++ ++
Sbjct: 11 TSIVSDRDTKFISHFWRTLWGKVGTKLLYSTTCHPQTDGQTEVVNKTLSTLLRSVLERNL 190
Query: 2075 KDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEV 2115
K W LP+ Y V S+T +PF +VYG + PL++
Sbjct: 191 KMWETWLPHIEFAYNRVVHSTTKHSPFEIVYGYNPLTPLDL 313
>TC18379 similar to UP|Q9SBM1 (Q9SBM1) Hydroxyproline-rich glycoprotein
DZ-HRGP precursor, partial (8%)
Length = 584
Score = 35.8 bits (81), Expect = 0.075
Identities = 26/87 (29%), Positives = 33/87 (37%)
Frame = +1
Query: 380 APINATQMPPSYPYMPYSQHPFFPPFYHQYPLPPGQPQVPVNAIAQQMKQQMPVQQQQQN 439
AP + P YP +PY QH F+PP P PP P P A P +
Sbjct: 172 APPYGMEFSP-YPSLPYPQHQFYPPPMAPPPPPPPAPAPP----APPPYWAAPPPRPYGP 336
Query: 440 QQARPTFPPIPMLYAELLPTLLQRGHC 466
T PP P A + ++ HC
Sbjct: 337 PLFTSTLPPRPPKPAPPKNVVKEKSHC 417
>AV427333
Length = 387
Score = 35.8 bits (81), Expect = 0.075
Identities = 31/101 (30%), Positives = 37/101 (35%), Gaps = 8/101 (7%)
Frame = +3
Query: 388 PPSYPYMPYS--QHPFFPP----FYHQYPLPPGQPQVPVNAIAQQMKQQMPVQQQQQNQQ 441
PPS+PY P + HPF PP Y + P PP P P
Sbjct: 87 PPSHPYNPPTPPSHPFNPPPTPSHYFKSPPPPSHSFAP-----PPRGHPSPPPSSPPPPS 251
Query: 442 ARPTFPPIPMLYAELLPTLLQRGHCTTRQG--KPPPDPLPP 480
+ P PP P + P H T +PPP PLPP
Sbjct: 252 SHPFTPPPPHVRPPPSPH-----HPITPPPHVRPPPPPLPP 359
>TC15341 similar to UP|Q9M0H8 (Q9M0H8) Predicted proline-rich protein,
partial (33%)
Length = 1002
Score = 35.4 bits (80), Expect = 0.098
Identities = 28/75 (37%), Positives = 32/75 (42%)
Frame = +1
Query: 374 QSMATVAPINATQMPPSYPYMPYSQHPFFPPFYHQYPLPPGQPQVPVNAIAQQMKQQMPV 433
Q M+ VAP T P P Q+P QY P Q Q QQ +QQ P
Sbjct: 769 QDMSRVAPQPCTNXSGXSPPPPVQQYP-------QYQQPQQQQQ------QQQQQQQWP- 906
Query: 434 QQQQQNQQARPTFPP 448
QQ QQ +PT PP
Sbjct: 907 --QQLPQQVQPTQPP 945
>TC14162 similar to UP|OLP1_LYCES (Q41350) Osmotin-like protein precursor,
partial (87%)
Length = 1232
Score = 34.7 bits (78), Expect = 0.17
Identities = 17/67 (25%), Positives = 34/67 (50%)
Frame = +3
Query: 383 NATQMPPSYPYMPYSQHPFFPPFYHQYPLPPGQPQVPVNAIAQQMKQQMPVQQQQQNQQA 442
N + S+ +P+S H PP PLP + Q+ ++ +A+ Q+ P +++ +
Sbjct: 30 NGSSFFTSHILLPHSHH-HHPPHTFTCPLPNPRQQLQIHRLARHPAQRRPPSPRRRRLRP 206
Query: 443 RPTFPPI 449
+P PP+
Sbjct: 207 QPLHPPL 227
>AU251550
Length = 329
Score = 34.3 bits (77), Expect = 0.22
Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +2
Query: 388 PPSYPYMPYSQHPFFPPFYHQYPLPP-GQPQVPVNAIAQQ 426
PP P PY+ P PPF H +P PP G P P A+ Q
Sbjct: 140 PPGPPRDPYAPAPPPPPFGHHHPPPPHGPPSPPPPAMFYQ 259
>TC17113 weakly similar to UP|Q9LFU8 (Q9LFU8) Proline-rich protein, partial
(25%)
Length = 1077
Score = 34.3 bits (77), Expect = 0.22
Identities = 29/104 (27%), Positives = 35/104 (32%), Gaps = 2/104 (1%)
Frame = +1
Query: 381 PINATQMPPSYP--YMPYSQHPFFPPFYHQYPLPPGQPQVPVNAIAQQMKQQMPVQQQQQ 438
P PP +P + P S P P + P PP P +P P Q
Sbjct: 547 PFQPPSPPPLFPNPFQPPSPPPLIPNPFQPPPSPP--PFIP-----------NPFQPPPS 687
Query: 439 NQQARPTFPPIPMLYAELLPTLLQRGHCTTRQGKPPPDPLPPRF 482
Q P FP P++ L P PPP P PP F
Sbjct: 688 KQPPSPLFPFPPIVIPGLTP--------------PPPPPPPPPF 777
Score = 29.3 bits (64), Expect = 7.0
Identities = 15/31 (48%), Positives = 18/31 (57%)
Frame = +1
Query: 388 PPSYPYMPYSQHPFFPPFYHQYPLPPGQPQV 418
PP P P PFFPPF +P PPG+P +
Sbjct: 748 PPPPPPPP----PFFPPFPPLFP-PPGRPPI 825
>TC15560 similar to SP|Q03173|NDPP_MOUSE NPC derived proline rich protein 1
(NDPP-1). {Mus musculus;}, partial (8%)
Length = 1134
Score = 33.5 bits (75), Expect = 0.37
Identities = 30/99 (30%), Positives = 34/99 (34%), Gaps = 2/99 (2%)
Frame = +3
Query: 384 ATQMPPSYPYMPYSQHPFFPPFYHQYPLPPGQPQVPVNAIAQQMKQQMPVQQQQQNQQAR 443
ATQ P SY S PF +H YPL A A P
Sbjct: 45 ATQTPSSYS----STLPFTNKSHHHYPLT-------TTASASSSSSSSPSSS*PSPSLPP 191
Query: 444 PTFPPIPMLYAELLPTLL--QRGHCTTRQGKPPPDPLPP 480
P+ PP+P A LP+ L T PPP P P
Sbjct: 192 PSPPPLPPPQAPPLPSHLPSPEPSSTMPPSTPPPQPTKP 308
>TC14279 similar to UP|Q09085 (Q09085) Hydroxyproline-rich glycoprotein
(HRGP) (Fragment), partial (57%)
Length = 941
Score = 33.1 bits (74), Expect = 0.49
Identities = 25/94 (26%), Positives = 33/94 (34%), Gaps = 2/94 (2%)
Frame = +1
Query: 388 PPSYPYMPYSQHPFFPPFYHQYPLPPG-QPQVPVNAIAQQMKQQMPVQQQQQNQQARPT- 445
PP P Y + P PP+Y++ P PP P P + P P+
Sbjct: 31 PPPVPKPYYYKSPPPPPYYYKSPPPPSPSPPPPYYYQSPPPPSHSPPPPYYYKSPPPPSP 210
Query: 446 FPPIPMLYAELLPTLLQRGHCTTRQGKPPPDPLP 479
PP P Y P + PPP P+P
Sbjct: 211 SPPPPYYYKSPPPPSPSPPPPYYYKSPPPPSPIP 312
>TC14758 similar to UP|O24601 (O24601) Glycine-rich RNA binding protein 2,
partial (93%)
Length = 725
Score = 33.1 bits (74), Expect = 0.49
Identities = 28/101 (27%), Positives = 35/101 (33%)
Frame = -1
Query: 381 PINATQMPPSYPYMPYSQHPFFPPFYHQYPLPPGQPQVPVNAIAQQMKQQMPVQQQQQNQ 440
P+ + PPS PY P + P PP YP PP P P + P +
Sbjct: 527 PLP*REPPPSPPYPPSRRPP*PPPPPPPYPPPP--PP*P--------RDPPPPPYPPSRR 378
Query: 441 QARPTFPPIPMLYAELLPTLLQRGHCTTRQGKPPPDPLPPR 481
P +PP P +PPP P PPR
Sbjct: 377 PPPPPYPPPP---------------------RPPPPPPPPR 318
>TC8786 similar to UP|Q9ZTK7 (Q9ZTK7) CONSTANS-like protein 2, partial
(33%)
Length = 594
Score = 32.7 bits (73), Expect = 0.64
Identities = 24/119 (20%), Positives = 49/119 (41%), Gaps = 2/119 (1%)
Frame = +1
Query: 31 AAQEQPVPVVSTAANVTPTVT--TDPRSIMPSGYPYGLPLYYTANTGAGTSGTTNNGPIP 88
A P P STAA P+ P+S P+ P + + +A + + ++ P+P
Sbjct: 103 ATHANPPPPPSTAARTPPSSAPPATPKSTPPTSSPPAIHVSLSAKSASKPPLASHARPMP 282
Query: 89 GANLTPVSTALTQAATTVTEPIVNAVPLFVHANAHHGSIATTGNMEERMEELAKELRRE 147
+ +P + +T T + P N P + + +TT + + K+ +++
Sbjct: 283 PTSASPAT--MTSTPPTPSPPATNVPPSLPSSTPPPPTSSTTNTCSQMQNQNQKQKQQK 453
>TC15425 similar to UP|GRP2_PHAVU (P10496) Glycine-rich cell wall structural
protein 1.8 precursor (GRP 1.8), partial (6%)
Length = 667
Score = 32.7 bits (73), Expect = 0.64
Identities = 23/75 (30%), Positives = 31/75 (40%), Gaps = 12/75 (16%)
Frame = +2
Query: 385 TQMPPSYPYMPYSQ------------HPFFPPFYHQYPLPPGQPQVPVNAIAQQMKQQMP 432
TQ PS P PY Q HP PP+ HQ PP Q+P + A Q+
Sbjct: 41 TQTNPSRPQTPYYQSAEQPPVPAYGHHP--PPYGHQ---PPPPYQIPPTSAAPYPPPQVH 205
Query: 433 VQQQQQNQQARPTFP 447
Q ++ +P +P
Sbjct: 206 QQPPASHEYGQPAYP 250
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.318 0.135 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,669,620
Number of Sequences: 28460
Number of extensions: 539447
Number of successful extensions: 3330
Number of sequences better than 10.0: 74
Number of HSP's better than 10.0 without gapping: 3107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3285
length of query: 2239
length of database: 4,897,600
effective HSP length: 105
effective length of query: 2134
effective length of database: 1,909,300
effective search space: 4074446200
effective search space used: 4074446200
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)
Medicago: description of AC122728.10