BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC122726.12 + phase: 0
(280 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC9683 similar to AAR23704 (AAR23704) At1g50260, partial (4%) 140 3e-34
TC8507 similar to UP|Q8LJS2 (Q8LJS2) Nucleolar histone deacetyla... 33 0.041
TC13318 similar to UP|CAA20314 (CAA20314) SPBC30B4.01c protein (... 33 0.071
BP034966 31 0.21
BP036655 30 0.60
AI967639 29 0.78
AV416122 28 1.3
TC8440 similar to UP|Q9SKU1 (Q9SKU1) At2g20760 protein (At2g2076... 28 1.3
AV774475 28 1.7
TC17157 similar to UP|CAD27462 (CAD27462) Nucleosome assembly pr... 28 2.3
TC12362 weakly similar to UP|UBF1_HUMAN (P17480) Nucleolar trans... 28 2.3
TC11050 weakly similar to UP|Q93Y10 (Q93Y10) Receptor-like prote... 28 2.3
AV778939 27 3.0
TC8606 similar to UP|AAQ82688 (AAQ82688) Epa4p, partial (7%) 27 3.0
TC9022 similar to PIR|T46225|T46225 alpha NAC-like protein - Ara... 27 3.0
BP049869 27 3.9
AV418884 27 3.9
TC9068 similar to UP|SCWA_YEAST (Q04951) Probable family 17 gluc... 27 3.9
AV406957 27 3.9
TC14391 similar to UP|Q93YG9 (Q93YG9) Insulin degrading enzyme, ... 27 5.1
>TC9683 similar to AAR23704 (AAR23704) At1g50260, partial (4%)
Length = 628
Score = 140 bits (352), Expect = 3e-34
Identities = 75/97 (77%), Positives = 82/97 (84%), Gaps = 3/97 (3%)
Frame = +2
Query: 187 DKESFMDVLAAIIVSEEFQGIVASETGFTKGLDNGSNTGSK---ASKSPVANAESIPPSA 243
DKESFMDVLAA+IVSEEFQGIVASE GFTK +DNGSN GSK S SPV NAE IP S+
Sbjct: 5 DKESFMDVLAALIVSEEFQGIVASEAGFTKAVDNGSNIGSKLSNVSNSPVVNAEPIPSSS 184
Query: 244 DNSEGSSGGSALFWLAVITSIAVLIAVNISGSSIFNP 280
DNS+G SGGSAL WLAVIT IA+LIAVNI GS++FNP
Sbjct: 185 DNSKG-SGGSALIWLAVITGIALLIAVNIGGSNLFNP 292
>TC8507 similar to UP|Q8LJS2 (Q8LJS2) Nucleolar histone deacetylase
HD2-P39, partial (40%)
Length = 620
Score = 33.5 bits (75), Expect = 0.041
Identities = 32/122 (26%), Positives = 50/122 (40%), Gaps = 15/122 (12%)
Frame = +3
Query: 145 DEEDDKTEEDSIDIDVSDDEL------SDTEEANVTDKTGVRESAYPTDKESFMDVLAAI 198
DEEDD +ED D D SD+E+ SD +++ TD+ + A K + L
Sbjct: 3 DEEDDSDDEDDED-DDSDEEMDDADSDSDESDSDDTDEETPVKKADQGKKRANDSALKTP 179
Query: 199 IVSEEFQGIVASETGFTK---------GLDNGSNTGSKASKSPVANAESIPPSADNSEGS 249
+ +++ + I +T K G G N+ SKA S P + +
Sbjct: 180 VSTKKAKNITPEKTDGKKTGHTATPHPGKKGGKNSESKAQTPKSGGQFSCSPCSKSFNSE 359
Query: 250 SG 251
SG
Sbjct: 360 SG 365
>TC13318 similar to UP|CAA20314 (CAA20314) SPBC30B4.01c protein (SPBC3D6.14C
protein) (Fragment), partial (15%)
Length = 543
Score = 32.7 bits (73), Expect = 0.071
Identities = 16/45 (35%), Positives = 24/45 (52%)
Frame = +3
Query: 144 EDEEDDKTEEDSIDIDVSDDELSDTEEANVTDKTGVRESAYPTDK 188
+D++DD E+ D D D+E +EE V K G + +A T K
Sbjct: 306 DDDDDDDDGEEEEDDDDDDEEEEGSEEVEVEGKDGAKGAAAQTTK 440
Score = 26.6 bits (57), Expect = 5.1
Identities = 13/46 (28%), Positives = 23/46 (49%)
Frame = +3
Query: 144 EDEEDDKTEEDSIDIDVSDDELSDTEEANVTDKTGVRESAYPTDKE 189
ED+++++ +ED D D DD+ EE + D E + + E
Sbjct: 261 EDDDEEEDDEDEDDDDDDDDDDDGEEEEDDDDDDEEEEGSEEVEVE 398
>BP034966
Length = 546
Score = 31.2 bits (69), Expect = 0.21
Identities = 17/63 (26%), Positives = 34/63 (52%)
Frame = +2
Query: 112 TDRIVALQGGWGFLRKGLSGEILLRLTYKAYVEDEEDDKTEEDSIDIDVSDDELSDTEEA 171
TD + Q G G LR L+ ++ +YVE ++ + + + +D+D+ L+ TE+
Sbjct: 83 TDFLNLFQKG-GVLRNSAKMNDLMTSSFLSYVELKKQAQKDLEDVDLDIEAGNLNPTEDP 259
Query: 172 NVT 174
N++
Sbjct: 260 NLS 268
>BP036655
Length = 556
Score = 29.6 bits (65), Expect = 0.60
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Frame = -3
Query: 144 EDEEDDKTEEDS---IDIDVSDDELSDTEEANVTDKTGVRESAYPT 186
+DE DD+ EE+S I+ + ++E + NV D+ GV++ P+
Sbjct: 314 DDESDDEVEEESETEIETEKEEEEEEECGVENVEDEMGVKKFNRPS 177
Score = 29.3 bits (64), Expect = 0.78
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = -3
Query: 143 VEDEEDDKTEEDSIDIDVSDDELSD-TEEANVTD 175
V DEE++ EE S D D++DDE D EE + T+
Sbjct: 371 VVDEEEEVVEEWSDDDDINDDESDDEVEEESETE 270
>AI967639
Length = 335
Score = 29.3 bits (64), Expect = 0.78
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +1
Query: 143 VEDEEDDKTEEDSIDIDVSDDELSD 167
+EDEE+D ++D D+ +S+D SD
Sbjct: 145 LEDEEEDDDDDDDDDLSISEDSDSD 219
Score = 27.3 bits (59), Expect = 3.0
Identities = 9/32 (28%), Positives = 23/32 (71%)
Frame = +1
Query: 144 EDEEDDKTEEDSIDIDVSDDELSDTEEANVTD 175
EDEE+D+ +E +++ + DD+ D ++ ++++
Sbjct: 109 EDEEEDQGDEYNLEDEEEDDDDDDDDDLSISE 204
>AV416122
Length = 414
Score = 28.5 bits (62), Expect = 1.3
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 144 EDEEDDKTEEDSIDIDVSDDELSDTE 169
ED+E+DK EED + D DD + E
Sbjct: 312 EDDEEDKEEEDEEEDDEDDDSNGEAE 389
>TC8440 similar to UP|Q9SKU1 (Q9SKU1) At2g20760 protein
(At2g20760/F5H14.27), partial (19%)
Length = 649
Score = 28.5 bits (62), Expect = 1.3
Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 12/83 (14%)
Frame = +3
Query: 209 ASETGFTKGLDNGSNTGSKASKSPVANAESIPPSADNSEGSSGG------------SALF 256
A + K +G T SKA+ S A S P A S G++ +A F
Sbjct: 156 AKDAKDAKDTKDGKETASKATGS-AAEVASEPKDAATSNGTADEPQKEVPATEEQPAA*F 332
Query: 257 WLAVITSIAVLIAVNISGSSIFN 279
WL+ ++ + + + +++ ++FN
Sbjct: 333 WLSYLSFLLIFLLLSLFSPAVFN 401
>AV774475
Length = 358
Score = 28.1 bits (61), Expect = 1.7
Identities = 11/19 (57%), Positives = 13/19 (67%)
Frame = +3
Query: 48 SQTTVIGWRPWNANLESAP 66
SQ+ VIGWR W A + AP
Sbjct: 144 SQSVVIGWRAWRARV*PAP 200
>TC17157 similar to UP|CAD27462 (CAD27462) Nucleosome assembly protein
1-like protein 3, partial (81%)
Length = 1298
Score = 27.7 bits (60), Expect = 2.3
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +2
Query: 144 EDEEDDKTEEDSIDIDVSDDE 164
ED++DD+ EED D D D+E
Sbjct: 809 EDDDDDEEEEDDDDDDEDDEE 871
Score = 26.2 bits (56), Expect = 6.6
Identities = 12/41 (29%), Positives = 21/41 (50%)
Frame = +2
Query: 145 DEEDDKTEEDSIDIDVSDDELSDTEEANVTDKTGVRESAYP 185
DE++D+ ++D + + DD+ D EE K+ A P
Sbjct: 794 DEDEDEDDDDDEEEEDDDDDDEDDEEGEGKSKSKSGSKARP 916
Score = 25.8 bits (55), Expect = 8.6
Identities = 11/35 (31%), Positives = 19/35 (53%)
Frame = +2
Query: 144 EDEEDDKTEEDSIDIDVSDDELSDTEEANVTDKTG 178
EDE++D +++ + D DDE + E K+G
Sbjct: 797 EDEDEDDDDDEEEEDDDDDDEDDEEGEGKSKSKSG 901
Score = 25.8 bits (55), Expect = 8.6
Identities = 14/39 (35%), Positives = 22/39 (55%)
Frame = +2
Query: 144 EDEEDDKTEEDSIDIDVSDDELSDTEEANVTDKTGVRES 182
ED+ED +ED D D D+E D ++ + D+ G +S
Sbjct: 776 EDDEDGDEDEDEDDDD--DEEEEDDDDDDEDDEEGEGKS 886
>TC12362 weakly similar to UP|UBF1_HUMAN (P17480) Nucleolar transcription
factor 1 (Upstream binding factor 1) (UBF-1)
(Autoantigen NOR-90), partial (3%)
Length = 493
Score = 27.7 bits (60), Expect = 2.3
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +3
Query: 146 EEDDKTEEDSIDIDVSDDELSDTEE 170
EE + +ED ID+D D++ D E+
Sbjct: 63 EESAEEDEDDIDLDFDDEDFEDDED 137
>TC11050 weakly similar to UP|Q93Y10 (Q93Y10) Receptor-like protein kinase
(At5g65240), partial (12%)
Length = 559
Score = 27.7 bits (60), Expect = 2.3
Identities = 29/116 (25%), Positives = 49/116 (42%), Gaps = 1/116 (0%)
Frame = +1
Query: 125 LRKGLSGEILLRLTYKAYVEDEEDDKTEEDSIDIDVSDDELSDTEEANVTDKTGVRESAY 184
LR GE LL+ +K Y + + ++ D +E+ E + T SA
Sbjct: 40 LRDDADGEFLLQRAWKLYEVERHLELVDKTLNSEDYDGEEVKRIIEIALLC-TQASASAR 216
Query: 185 PTDKESFMDVLAA-IIVSEEFQGIVASETGFTKGLDNGSNTGSKASKSPVANAESI 239
PT E + + + ++V + V E+ F D ++TGS SKS + S+
Sbjct: 217 PTMSEIVVLLKSKNLLVHMKPAMPVFVESNFRPRTDTSTSTGSSTSKSNATVSTSV 384
>AV778939
Length = 582
Score = 27.3 bits (59), Expect = 3.0
Identities = 23/91 (25%), Positives = 43/91 (46%), Gaps = 8/91 (8%)
Frame = +1
Query: 158 IDVSDDELSDTEEANVTDKTGVRESAYPTDKESFMD------VLAAIIVSEEFQGIVASE 211
+ +S+ EL ++ + + G A E FM L ++ +SE G V ++
Sbjct: 61 LGLSESELLKSDSRH---RQGADSEAENRFMEPFMSGSKSSPALDSLKLSEGLHGFVGND 231
Query: 212 TGF--TKGLDNGSNTGSKASKSPVANAESIP 240
+G + G+D+GSN S A++ + S+P
Sbjct: 232 SGSFGSSGVDSGSNLYSVANRLALERQMSLP 324
>TC8606 similar to UP|AAQ82688 (AAQ82688) Epa4p, partial (7%)
Length = 1008
Score = 27.3 bits (59), Expect = 3.0
Identities = 18/53 (33%), Positives = 24/53 (44%), Gaps = 6/53 (11%)
Frame = -2
Query: 144 EDEEDDKTE------EDSIDIDVSDDELSDTEEANVTDKTGVRESAYPTDKES 190
EDEED+ E +D D D DD D EE V ++ E D+E+
Sbjct: 431 EDEEDEDGEDQEDDDDDDEDDDEEDDGGEDEEEEGVEEEDNEDEEEDEEDEEA 273
>TC9022 similar to PIR|T46225|T46225 alpha NAC-like protein - Arabidopsis
thaliana {Arabidopsis thaliana;}, partial (75%)
Length = 1083
Score = 27.3 bits (59), Expect = 3.0
Identities = 15/41 (36%), Positives = 23/41 (55%), Gaps = 1/41 (2%)
Frame = +3
Query: 143 VED-EEDDKTEEDSIDIDVSDDELSDTEEANVTDKTGVRES 182
VED ++DDK E D + + DDE D E+ + G ++S
Sbjct: 219 VEDVKDDDKDEADDDEDEDDDDEDDDKEDGALGGSEGSKQS 341
>BP049869
Length = 532
Score = 26.9 bits (58), Expect = 3.9
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -3
Query: 224 TGSKASKSPVANAESIPPSADNSEGSSGGSALF 256
TG S+SP + PPS +S SS S+LF
Sbjct: 473 TGHTRSRSP*STWGFAPPSLTSSSASSSSSSLF 375
>AV418884
Length = 418
Score = 26.9 bits (58), Expect = 3.9
Identities = 10/30 (33%), Positives = 18/30 (59%)
Frame = +2
Query: 145 DEEDDKTEEDSIDIDVSDDELSDTEEANVT 174
+ + +K + D+D+ +DELS EE +T
Sbjct: 56 NSDTEKQTTAATDVDIDEDELSPVEEVRLT 145
>TC9068 similar to UP|SCWA_YEAST (Q04951) Probable family 17 glucosidase
SCW10 precursor (Soluble cell wall protein 10) ,
partial (6%)
Length = 1209
Score = 26.9 bits (58), Expect = 3.9
Identities = 11/35 (31%), Positives = 19/35 (53%)
Frame = +2
Query: 144 EDEEDDKTEEDSIDIDVSDDELSDTEEANVTDKTG 178
+D++DD ++D D D DD+ D ++ TG
Sbjct: 83 DDDDDDDDDDDDDDDDDDDDDDDDGDKKQPDSDTG 187
Score = 25.8 bits (55), Expect = 8.6
Identities = 10/37 (27%), Positives = 21/37 (56%)
Frame = +2
Query: 144 EDEEDDKTEEDSIDIDVSDDELSDTEEANVTDKTGVR 180
+D++DD ++D D D DD+ D ++ + T ++
Sbjct: 89 DDDDDDDDDDDDDDDDDDDDDDGDKKQPDSDTGTALK 199
>AV406957
Length = 439
Score = 26.9 bits (58), Expect = 3.9
Identities = 17/49 (34%), Positives = 22/49 (44%)
Frame = +2
Query: 144 EDEEDDKTEEDSIDIDVSDDELSDTEEANVTDKTGVRESAYPTDKESFM 192
E EE+++ EE E S TEE T +R + PT SFM
Sbjct: 23 EPEEEEEEEE----------EASSTEEEPATTTMALRMNPLPTQTSSFM 139
>TC14391 similar to UP|Q93YG9 (Q93YG9) Insulin degrading enzyme, partial
(10%)
Length = 782
Score = 26.6 bits (57), Expect = 5.1
Identities = 18/66 (27%), Positives = 33/66 (49%)
Frame = +3
Query: 70 HMLVSNPKKQKLSIQVKDALGFADLTIGTGEVDLGSLQDTVPTDRIVALQGGWGFLRKGL 129
++ V P+K+ LSI+V +L ++ E L + + + +L G + KGL
Sbjct: 228 YVKVGAPRKKTLSIRVHGSLHSSEYKAEASEPHLAKIDNIFSFRKSQSLYGSF----KGL 395
Query: 130 SGEILL 135
SG++ L
Sbjct: 396 SGQMKL 413
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.310 0.131 0.363
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,559,678
Number of Sequences: 28460
Number of extensions: 36228
Number of successful extensions: 315
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 273
length of query: 280
length of database: 4,897,600
effective HSP length: 89
effective length of query: 191
effective length of database: 2,364,660
effective search space: 451650060
effective search space used: 451650060
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.8 bits)
Medicago: description of AC122726.12