TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC122725.8 - phase: 0 /pseudo
         (297 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC18491 similar to UP|RRF_DAUCA (P37706) Ribosome recycling fact...   168  1e-42
TC16114 similar to UP|AAQ62433 (AAQ62433) At3g01800, partial (73%)    123  3e-29
AV766838                                                              101  1e-22
TC16242 UP|Q8W538 (Q8W538) Ribosomal S15 protein (Fragment), com...    35  0.020
TC18470 similar to PIR|T05606|T05606 protein kinase homolog F9D1...    28  1.9
TC19699                                                                27  3.2
TC9542 homologue to UP|CAMT_MEDSA (Q40313) Caffeoyl-CoA O-methyl...    27  4.1
BP058782                                                               26  7.1
BI417394                                                               26  9.2

>TC18491 similar to UP|RRF_DAUCA (P37706) Ribosome recycling factor,
           chloroplast precursor (Ribosome releasing factor,
           chloroplast) (Nuclear located protein D2) (Fragment),
           partial (43%)
          Length = 474

 Score =  168 bits (425), Expect = 1e-42
 Identities = 102/190 (53%), Positives = 124/190 (64%), Gaps = 4/190 (2%)
 Frame = +3

Query: 2   ATSFSSTTPLRSIFQNLP----IVPKALLSAHSSFTIKRSSTYVTLKLSGSGRHSLSKGL 57
           ATSFS  TP+RSIFQN P     +P++      S TI  S++YVTLKLS +   +LS   
Sbjct: 6   ATSFSPATPVRSIFQNPPKTTLFLPESFYGVKRS-TISASASYVTLKLSRT--LTLSAKP 176

Query: 58  LTLHTRYQNYYSRSACFQF*TTSLVFIVICFF*KIPRKGFVRAATIEEIEAEKASIENDV 117
           +  H R                                G VRAAT+EEIEAEK +IE DV
Sbjct: 177 ILSHRRM-------------------------------GIVRAATMEEIEAEKKAIEKDV 263

Query: 118 KSRMERTLDNVKTNFSSIRTGRATPSMLDKIEVEYYGSPVSLKTIAQISTPDASSLLVSP 177
           ++RME+T++NV++NF+SIRTGR+ PSMLDKIEVEYYG+P SLK+IAQISTPD SSLLV P
Sbjct: 264 RNRMEKTIENVRSNFNSIRTGRSNPSMLDKIEVEYYGAPASLKSIAQISTPDGSSLLVQP 443

Query: 178 YDKSSLKAIE 187
           YDKSSLKAIE
Sbjct: 444 YDKSSLKAIE 473


>TC16114 similar to UP|AAQ62433 (AAQ62433) At3g01800, partial (73%)
          Length = 1297

 Score =  123 bits (309), Expect = 3e-29
 Identities = 70/188 (37%), Positives = 110/188 (58%)
 Frame = +3

Query: 101 ATIEEIEAEKASIENDVKSRMERTLDNVKTNFSSIRTGRATPSMLDKIEVEYYGSPVSLK 160
           +TIE       +I+ +  S+ME  +  + T  S +RTGRA+P MLD I VE  G  + L 
Sbjct: 357 STIEVPLVLGPTIKANAVSQMEAAISALSTELSKLRTGRASPGMLDHIIVETGGVKIPLV 536

Query: 161 TIAQISTPDASSLLVSPYDKSSLKAIEKAIVNSDVGMTPNNDGEVIRLSIPQLTSDRRKE 220
            IA +S  D  +L V+PYD  +LK +E AIV+S +G+ P  DGE +  +IP LT +  + 
Sbjct: 537 RIALVSVIDPKTLSVNPYDPQTLKQLENAIVSSPLGLNPKADGERLIAAIPPLTKEHMQA 716

Query: 221 LTKIVSKQVEEGKVALRNIRRDALKAYEKLEKDKKLSEDNVKDLSSDLQKLTDDYIKKVD 280
           + K+V+K  E+ + ++R  R+ A+ A +KL  +  L +D++K L  ++  LT  +IK  +
Sbjct: 717 MNKLVTKSCEDARQSIRRARQKAMDAIKKL--NSSLPKDDIKRLEKEVDDLTKKFIKTAE 890

Query: 281 ALYKQKEK 288
              K KEK
Sbjct: 891 DTCKAKEK 914


>AV766838 
          Length = 493

 Score =  101 bits (252), Expect = 1e-22
 Identities = 50/70 (71%), Positives = 62/70 (88%)
 Frame = -3

Query: 221 LTKIVSKQVEEGKVALRNIRRDALKAYEKLEKDKKLSEDNVKDLSSDLQKLTDDYIKKVD 280
           L+K+V    ++GKVALRNI++DALKAYEKLEK+KKLSEDNVKDLSSDLQKL D+YIKKV+
Sbjct: 491 LSKVVFNPTKKGKVALRNIKKDALKAYEKLEKEKKLSEDNVKDLSSDLQKLPDEYIKKVE 312

Query: 281 ALYKQKEKVL 290
            + +QK+K L
Sbjct: 311 PISQQKKKEL 282


>TC16242 UP|Q8W538 (Q8W538) Ribosomal S15 protein (Fragment), complete
          Length = 581

 Score = 34.7 bits (78), Expect = 0.020
 Identities = 21/65 (32%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
 Frame = -2

Query: 115 NDVKSRMERTLDNVKTNFSSIRTGRATPSMLDKIEVEYYGSP--VSLKTIAQISTPDASS 172
           N +++R E++L +   + S  R  R+TP  L+ + V ++G+P   S+ T A  +T +  S
Sbjct: 193 NLLRARAEKSLTSSSVDISK-RASRSTPRKLNFLNVLFFGTPAATSVSTSAMAATLNTRS 17

Query: 173 LLVSP 177
           LL+ P
Sbjct: 16  LLLLP 2


>TC18470 similar to PIR|T05606|T05606 protein kinase homolog F9D16.210 -
           Arabidopsis thaliana {Arabidopsis thaliana;}, partial
           (9%)
          Length = 559

 Score = 28.1 bits (61), Expect = 1.9
 Identities = 10/21 (47%), Positives = 15/21 (70%)
 Frame = +2

Query: 73  CFQF*TTSLVFIVICFF*KIP 93
           CF+F T S++ I+ CF  K+P
Sbjct: 392 CFKFCTRSMIAIIFCFIFKLP 454


>TC19699 
          Length = 511

 Score = 27.3 bits (59), Expect = 3.2
 Identities = 11/26 (42%), Positives = 18/26 (68%)
 Frame = -2

Query: 126 DNVKTNFSSIRTGRATPSMLDKIEVE 151
           DN+K NFS+ RT R   + L+K +++
Sbjct: 312 DNIK*NFSTYRTSRLQENNLEKTKID 235


>TC9542 homologue to UP|CAMT_MEDSA (Q40313) Caffeoyl-CoA
           O-methyltransferase  (Trans-caffeoyl-CoA
           3-O-methyltransferase) (CCoAMT) (CCoAOMT) , complete
          Length = 1012

 Score = 26.9 bits (58), Expect = 4.1
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = -2

Query: 5   FSSTTPLRSIFQNLPIVPKALLSAHSSFTIKRSSTYV 41
           F +   LRS+F+N P   + ++  H  F +K  S+++
Sbjct: 327 FLALISLRSMFKNCPSSAEVVMMFHGCFAVKSLSSFM 217


>BP058782 
          Length = 363

 Score = 26.2 bits (56), Expect = 7.1
 Identities = 14/59 (23%), Positives = 29/59 (48%)
 Frame = +3

Query: 139 RATPSMLDKIEVEYYGSPVSLKTIAQISTPDASSLLVSPYDKSSLKAIEKAIVNSDVGM 197
           +A PS+L   ++  +   +   T+   +TP+ SS  +     SS  +++  + +  VGM
Sbjct: 141 QALPSVLGSWQLLVFSKSILSSTLNSSATPNLSSSFLDSRAASSAMSVKLVLYSFKVGM 317


>BI417394 
          Length = 598

 Score = 25.8 bits (55), Expect = 9.2
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = +3

Query: 5   FSSTTPLRSIFQNLPIVPKALLSAHSSFTIKR 36
           FSS+TP ++I++   I+P + +S   S++  R
Sbjct: 138 FSSSTPSKNIYRKRIILPVSKISIQESYSNSR 233


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.319    0.133    0.359 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,827,505
Number of Sequences: 28460
Number of extensions: 45007
Number of successful extensions: 225
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of query: 297
length of database: 4,897,600
effective HSP length: 90
effective length of query: 207
effective length of database: 2,336,200
effective search space: 483593400
effective search space used: 483593400
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)