BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC122723.6 - phase: 0
(437 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AW720001 62 1e-10
TC10815 similar to UP|Q940Y3 (Q940Y3) At2g17400 (At2g17400/At2g1... 47 6e-06
TC15579 weakly similar to UP|Q8L7T9 (Q8L7T9) AT5g54930/MBG8_20, ... 35 0.019
BP041427 32 0.16
TC20206 30 0.78
BP053178 29 1.7
BP057617 29 1.7
TC14532 similar to UP|Q9FYA8 (Q9FYA8) SC35-like splicing factor ... 29 1.7
AV427815 28 3.0
BP036426 28 3.9
TC19515 similar to UP|Q9YGK0 (Q9YGK0) Vitellogenin precursor, pa... 28 3.9
TC13916 homologue to UP|Q9FK48 (Q9FK48) Similarity to transcript... 27 5.1
TC12971 similar to GB|AAN73294.1|25141199|BT002297 At5g12010/F14... 27 5.1
TC7897 weakly similar to UP|ENL2_ARATH (Q9T076) Early nodulin-li... 27 8.7
>AW720001
Length = 542
Score = 62.4 bits (150), Expect = 1e-10
Identities = 31/93 (33%), Positives = 50/93 (53%), Gaps = 1/93 (1%)
Frame = +3
Query: 243 RKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKLLNQTMD-KDISRMIGELWNNLKESEK 301
+KK + K++DP PK SG+ FF + LK N + D+ R++GE W + EK
Sbjct: 138 KKKKQKKKKDPNAPKRAMSGFMFFSQMERENLKKTNPGISFTDVGRVLGEKWKKMSTEEK 317
Query: 302 TVYQEKAIKDKERYQAEMEDYRDKMKTSIVTDN 334
Y+ KA DK+RY E+ Y++ ++ + N
Sbjct: 318 EPYEVKARADKKRYMDEISGYKNPQPMNVDSGN 416
>TC10815 similar to UP|Q940Y3 (Q940Y3) At2g17400 (At2g17400/At2g17400),
partial (18%)
Length = 1027
Score = 47.0 bits (110), Expect = 6e-06
Identities = 28/100 (28%), Positives = 45/100 (45%)
Frame = +2
Query: 25 YPEPLAKYDDVVANPKLFMLTLEKLHASMGTKFMVPIIGGKELDLCRLFIEVTSRGGIEK 84
Y EP A + + FM LE + +F P G+ L+ +L+ V GG +
Sbjct: 509 YDEPGASLER-----EAFMKELENFYRERSLEFKPPKFYGEPLNCLKLWRAVIRLGGYDV 673
Query: 85 LMKERRWKEVTAAFSFPSTATNASFVLRKYYSSLLYHYEQ 124
+ + W++V +F P T T S+ R +Y L YE+
Sbjct: 674 VTGSKLWRQVGESFHPPKTCTTVSWTFRIFYEKALLEYEK 793
>TC15579 weakly similar to UP|Q8L7T9 (Q8L7T9) AT5g54930/MBG8_20, partial
(27%)
Length = 592
Score = 35.4 bits (80), Expect = 0.019
Identities = 17/43 (39%), Positives = 30/43 (69%), Gaps = 2/43 (4%)
Frame = +3
Query: 188 LAGVIDGKFESGYLVSVSVGSE--TLKGVLYESPQSIKINNNN 228
++GVI+ F++GYL+SV VG TL+GV+++ + + I+ N
Sbjct: 441 VSGVIEAVFDAGYLLSVRVGDSDTTLRGVVFKPGRYVPISPEN 569
>BP041427
Length = 527
Score = 32.3 bits (72), Expect = 0.16
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = -1
Query: 185 GSSLAGVIDGKFESGYLVSVSVGSETLKGVLY 216
G+ + G +DG F+SG L++ +V +GVL+
Sbjct: 500 GAEVRGKVDGAFDSGLLMTATVNGRVFRGVLF 405
>TC20206
Length = 508
Score = 30.0 bits (66), Expect = 0.78
Identities = 15/43 (34%), Positives = 25/43 (57%)
Frame = -1
Query: 210 TLKGVLYESPQSIKINNNNIASAALGVQRRRRRRKKSEIKRRD 252
T G ESP + +NN+ + +G + RRRRRK++ K+ +
Sbjct: 151 TCSGKGSESPNLMVLNNHALFRIRVG*EIRRRRRKRNRNKKNE 23
>BP053178
Length = 529
Score = 28.9 bits (63), Expect = 1.7
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -3
Query: 69 LCRLFIEVTSRGGIEKLMKERRWKEVTAAF 98
LC L IE GG+EK++ RW+E F
Sbjct: 221 LCVLMIE*KELGGLEKMLSGGRWEESCYCF 132
>BP057617
Length = 500
Score = 28.9 bits (63), Expect = 1.7
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -3
Query: 69 LCRLFIEVTSRGGIEKLMKERRWKEVTAAF 98
LC L IE GG+EK++ RW+E F
Sbjct: 195 LCVLMIE*KELGGLEKMLSGGRWEESCYCF 106
>TC14532 similar to UP|Q9FYA8 (Q9FYA8) SC35-like splicing factor SCL30a, 30a
kD, partial (71%)
Length = 1073
Score = 28.9 bits (63), Expect = 1.7
Identities = 14/27 (51%), Positives = 18/27 (65%)
Frame = +2
Query: 237 QRRRRRRKKSEIKRRDPAHPKPNRSGY 263
+RRR RR+K + RR P P P+RS Y
Sbjct: 89 KRRRWRREKPQP*RRRPLWPPPSRSPY 169
>AV427815
Length = 421
Score = 28.1 bits (61), Expect = 3.0
Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 6/58 (10%)
Frame = -1
Query: 160 SPGTH-PVDFQK-----SGVNASELPQVSSSGSSLAGVIDGKFESGYLVSVSVGSETL 211
SP TH P++ + SGV++S++PQ S SS + ++ F S + S+ + S+ +
Sbjct: 382 SPHTHLPMNLSRTRSMYSGVHSSDMPQHSHFASSTSEIVGSSFRS-LMASLVISSKEM 212
>BP036426
Length = 558
Score = 27.7 bits (60), Expect = 3.9
Identities = 11/27 (40%), Positives = 20/27 (73%)
Frame = +3
Query: 232 AALGVQRRRRRRKKSEIKRRDPAHPKP 258
++LG+ +R RRR++ ++R P+HP P
Sbjct: 30 SSLGLLQRLRRRRR*LLQRPSPSHPIP 110
>TC19515 similar to UP|Q9YGK0 (Q9YGK0) Vitellogenin precursor, partial (3%)
Length = 504
Score = 27.7 bits (60), Expect = 3.9
Identities = 11/48 (22%), Positives = 22/48 (44%)
Frame = +3
Query: 351 DVDIKMHDSCQTPEESSSGESDYVADDINMDASSGGARVDSEAFVDSD 398
D D HD + + ++D++ DD++ D +G + + D D
Sbjct: 171 DSDDMSHDDYDSASDIDDEDADFILDDLDFDGGTGLLEIVGDRDEDDD 314
>TC13916 homologue to UP|Q9FK48 (Q9FK48) Similarity to transcription
regulator, partial (17%)
Length = 603
Score = 27.3 bits (59), Expect = 5.1
Identities = 11/39 (28%), Positives = 24/39 (61%)
Frame = +2
Query: 292 LWNNLKESEKTVYQEKAIKDKERYQAEMEDYRDKMKTSI 330
+WN + +++ +EK D ++ +++ YRD++KT I
Sbjct: 236 IWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWI 352
>TC12971 similar to GB|AAN73294.1|25141199|BT002297 At5g12010/F14F18_180
{Arabidopsis thaliana;}, partial (7%)
Length = 721
Score = 27.3 bits (59), Expect = 5.1
Identities = 24/112 (21%), Positives = 51/112 (45%), Gaps = 7/112 (6%)
Frame = +3
Query: 225 NNNNIASAALGVQRRRRRRKKSEIKRRD--PAHPKPNRSGYNFFFAEQHARLKLLNQTMD 282
NNNN ++ ++ ++RRR+ K + D P++ + G N ++ +L +
Sbjct: 186 NNNNSSATSVNTRKRRRKVKGDDDVGGDEIPSNNREEEEGDNKSKNKKEELKGILTSLLL 365
Query: 283 KDISRMIGELWNNLKESEKTVY-----QEKAIKDKERYQAEMEDYRDKMKTS 329
D + E + +K+SE + +K K +Y ++DY +++ S
Sbjct: 366 LDEQEKV-EQDHQIKDSEDEKFSLETNHKKKTKAMIQYYTNLDDYYGQVEES 518
>TC7897 weakly similar to UP|ENL2_ARATH (Q9T076) Early nodulin-like protein
2 precursor (Phytocyanin-like protein), partial (31%)
Length = 1482
Score = 26.6 bits (57), Expect = 8.7
Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 3/85 (3%)
Frame = +3
Query: 134 TPASSDALQNQSTMSVPASIT-QFLQPS--PGTHPVDFQKSGVNASELPQVSSSGSSLAG 190
+PA + +T P S + + PS P + P D S N S P + GSS
Sbjct: 852 SPAGGPPAPSPTTGDTPPSASGPDVSPSGTPSSLPADTPSSSSNNSTAPPPGNGGSS--- 1022
Query: 191 VIDGKFESGYLVSVSVGSETLKGVL 215
V+ F Y V++ VG+ L G +
Sbjct: 1023VVPSSF-LHYSVTIVVGAALLYGTV 1094
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.313 0.129 0.362
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,661,422
Number of Sequences: 28460
Number of extensions: 82722
Number of successful extensions: 517
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 487
length of query: 437
length of database: 4,897,600
effective HSP length: 93
effective length of query: 344
effective length of database: 2,250,820
effective search space: 774282080
effective search space used: 774282080
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (26.6 bits)
Medicago: description of AC122723.6