BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC122722.5 - phase: 0
(379 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP040275 84 4e-17
BP045911 81 3e-16
TC11415 similar to PIR|G96696|G96696 protein F1N21.14 [imported]... 42 2e-04
AV770969 41 3e-04
TC8260 similar to UP|Q94ES8 (Q94ES8) Nodule extensin (Fragment),... 41 4e-04
TC9861 similar to UP|Q8S8K1 (Q8S8K1) Predicted protein, partial ... 39 0.001
BI420337 39 0.001
TC14875 similar to UP|Q9VNX6 (Q9VNX6) CG7421-PA, partial (4%) 39 0.002
BP048276 38 0.002
TC8572 similar to UP|Q9SCM3 (Q9SCM3) 40S ribosomal protein S2 ho... 37 0.004
TC8726 similar to GB|AAO24533.1|27808506|BT003101 At2g41420 {Ara... 37 0.007
AV415208 37 0.007
TC10357 similar to UP|Q9T0K5 (Q9T0K5) Extensin-like protein, par... 37 0.007
AU251550 36 0.009
TC10237 similar to UP|NO75_SOYBN (P08297) Early nodulin 75 precu... 36 0.012
TC17431 similar to UP|Q44395 (Q44395) Ti plasmid pTi15955 T-DNA ... 35 0.016
AV773398 35 0.016
AW720050 35 0.016
TC8296 similar to GB|AAN28790.1|23505861|AY143851 At5g64200/MSJ1... 35 0.016
TC16065 weakly similar to UP|Q9SBM1 (Q9SBM1) Hydroxyproline-rich... 35 0.016
>BP040275
Length = 293
Score = 84.0 bits (206), Expect = 4e-17
Identities = 53/93 (56%), Positives = 60/93 (63%)
Frame = +3
Query: 9 SPPSHHHHHQPLLSSLVVRPSLTENSPPGAAAHSNDYEPGELRRDPPPVNYSRSDRYSDD 68
S PSHHH PLLSSLVVRPS TE + AAA DYE GEL R+PPP +SRSDR+ D+
Sbjct: 39 SAPSHHHQ-PPLLSSLVVRPSHTETT---AAA---DYESGELHREPPPP-FSRSDRFPDE 194
Query: 69 AGYRFRAGSSSPVHHRRDADHRFPSDYNHFPRN 101
GYR RA SSP R R SDY+H R+
Sbjct: 195 PGYRIRACFSSPGSPERLRIIRPSSDYHHLSRS 293
>BP045911
Length = 352
Score = 81.3 bits (199), Expect = 3e-16
Identities = 38/52 (73%), Positives = 44/52 (84%)
Frame = -1
Query: 328 GDRWSRDVRDRSRSPIRGGPPAKDYRRDPVMSRGGRDDRRGGVGRDRIGGMY 379
G RW+RDVR+R RSPIRGGPPAKD+RRD ++R GRD RRGGVG R+GGMY
Sbjct: 352 GGRWARDVRERIRSPIRGGPPAKDFRRDMFVNR-GRDYRRGGVGPGRVGGMY 200
>TC11415 similar to PIR|G96696|G96696 protein F1N21.14 [imported] -
Arabidopsis thaliana {Arabidopsis thaliana;}, partial
(16%)
Length = 729
Score = 42.0 bits (97), Expect = 2e-04
Identities = 31/103 (30%), Positives = 42/103 (40%), Gaps = 18/103 (17%)
Frame = +1
Query: 117 PHPYARGRPGGRPFGRAFDGPGYGHRHGRGEGLHGRNNPNVRP----------------R 160
P PY G G G + P R+G G + G +RP R
Sbjct: 22 PTPYPSGSMVGN--GGIYGMPQLLDRYGLGVPI-GPGTMGIRPGFFHDDKAQKKGADATR 192
Query: 161 EGDWMCPDALCGNLNFARRDFCN--QCKRPRPAAAGSPPRRGS 201
+ DW CP CGN+NF+ R CN +C P+P + S + S
Sbjct: 193 DNDWTCPK--CGNVNFSFRTVCNMRKCNTPKPGSQASKSDKNS 315
>AV770969
Length = 371
Score = 41.2 bits (95), Expect = 3e-04
Identities = 17/30 (56%), Positives = 21/30 (69%)
Frame = +2
Query: 160 REGDWMCPDALCGNLNFARRDFCNQCKRPR 189
REGDW C + N N+A R FCN+CK+PR
Sbjct: 98 REGDWECSSS--NNRNYAFRSFCNRCKQPR 181
Score = 31.6 bits (70), Expect = 0.23
Identities = 13/32 (40%), Positives = 19/32 (58%)
Frame = +1
Query: 162 GDWMCPDALCGNLNFARRDFCNQCKRPRPAAA 193
GDW+C C N N+A R+ C +C + + AA
Sbjct: 238 GDWICSG--CTNNNYASREKCKKCGQAKEVAA 327
>TC8260 similar to UP|Q94ES8 (Q94ES8) Nodule extensin (Fragment), partial
(79%)
Length = 1017
Score = 40.8 bits (94), Expect = 4e-04
Identities = 33/105 (31%), Positives = 44/105 (41%), Gaps = 5/105 (4%)
Frame = +3
Query: 188 PRPAAAGSPPRRGSPPLHAPPRRYPGP-PFDRSP----ERPMNGYRSPPPRLMGRDGLRD 242
P+P + SPP PP+H+PP Y P P SP E+P Y SPPP +
Sbjct: 135 PKPYSYHSPP----PPVHSPPPPYEKPHPVYHSPPPPYEKPHPVYHSPPP----PPPHKP 290
Query: 243 YGPAAAALPPLRHEGRFPDPHLHRERMDYMDDAYRGRGKFDRPPP 287
Y + PP ++P PH H + K+ PPP
Sbjct: 291 YKYPSPPPPP----HKYPHPHPHPVYHSPPPPPPKKHYKYSSPPP 413
Score = 32.0 bits (71), Expect = 0.17
Identities = 23/78 (29%), Positives = 27/78 (34%)
Frame = +3
Query: 188 PRPAAAGSPPRRGSPPLHAPPRRYPGPPFDRSPERPMNGYRSPPPRLMGRDGLRDYGPAA 247
P P PP PP H P +Y PP P Y SPPP P
Sbjct: 486 PHPVYHSPPP----PPPHEKPYKYASPPPPPVHTYPHPVYHSPPP------------PVH 617
Query: 248 AALPPLRHEGRFPDPHLH 265
+ PP + P P+ H
Sbjct: 618 SPPPPHYYYKSPPPPYHH 671
Score = 26.2 bits (56), Expect = 9.6
Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 4/42 (9%)
Frame = +3
Query: 195 SPPRRGSPPLHAPPRRYP----GPPFDRSPERPMNGYRSPPP 232
SPP PP+H P +P PP + P Y SPPP
Sbjct: 402 SPP----PPVHTYPHPHPVYHSPPPPVHTYPHPHPVYHSPPP 515
>TC9861 similar to UP|Q8S8K1 (Q8S8K1) Predicted protein, partial (15%)
Length = 470
Score = 39.3 bits (90), Expect = 0.001
Identities = 18/38 (47%), Positives = 22/38 (57%)
Frame = +2
Query: 160 REGDWMCPDALCGNLNFARRDFCNQCKRPRPAAAGSPP 197
R GDWMC + C N N+A R CN+CK R A + P
Sbjct: 122 RSGDWMCTN--CNNHNYASRLHCNRCKTQRVAPMPTRP 229
>BI420337
Length = 397
Score = 38.9 bits (89), Expect = 0.001
Identities = 23/55 (41%), Positives = 29/55 (51%), Gaps = 9/55 (16%)
Frame = +1
Query: 188 PRPAAAGSPPRRGSPPLHAPPRRY----PGPPFDR-----SPERPMNGYRSPPPR 233
P+P SPP PP+H+PP Y P PP + SP P+ Y+SPPPR
Sbjct: 115 PKPYYYHSPP----PPMHSPPPPYHYSSPPPPPKKPYKYPSPPPPVYKYKSPPPR 267
Score = 28.9 bits (63), Expect = 1.5
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 6/43 (13%)
Frame = +1
Query: 196 PPR------RGSPPLHAPPRRYPGPPFDRSPERPMNGYRSPPP 232
PPR + PP P +YP PP P+ Y+SPPP
Sbjct: 259 PPRTPAYYYKSPPPPPKNPYKYPSPP------PPVYKYKSPPP 369
Score = 27.7 bits (60), Expect = 3.3
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
Frame = +1
Query: 189 RPAAAGSPPRRGSPPLH---APPRRYPGPPFDRSPERPMNGYR--SPPP 232
+P SPP PP++ +PP R P + P P N Y+ SPPP
Sbjct: 205 KPYKYPSPP----PPVYKYKSPPPRTPAYYYKSPPPPPKNPYKYPSPPP 339
>TC14875 similar to UP|Q9VNX6 (Q9VNX6) CG7421-PA, partial (4%)
Length = 1240
Score = 38.5 bits (88), Expect = 0.002
Identities = 46/164 (28%), Positives = 61/164 (37%), Gaps = 10/164 (6%)
Frame = +2
Query: 194 GSPPRRGSPPLHAPPRRYPGPPFDRSPERPMNGYRSPPPR--------LMGRDGLRDYGP 245
GS P+R + +P P R P R +NG+R P R + R +
Sbjct: 17 GSKPQRRRSRVPSPL-----PTLQRWPRRTLNGHRHHPSRHRPSNRRPIQRRQHQPRHRR 181
Query: 246 AAAALPPLRHEGRFPDPHLH-RERMDYMDDAYRGRGKFDRPPPLDWDNRDRGRDGFSNER 304
LPP + P PHLH R R+ ++ + R PP R R
Sbjct: 182 RRPPLPPP*RRQQPPPPHLHPRRRLLHLHPLQQ------RLPPPPQQRR----------R 313
Query: 305 KGFERRPLSPSAPLLPSLPPHR-GGDRWSRDVRDRSRSPIRGGP 347
+G RR L P P + PPHR S V R P+ GP
Sbjct: 314 EGKRRRRLRPLPPRPGAPPPHRLRRHLGSHPVGCRPPRPVAQGP 445
Score = 28.1 bits (61), Expect = 2.5
Identities = 49/190 (25%), Positives = 60/190 (30%), Gaps = 5/190 (2%)
Frame = +2
Query: 65 YSDDAGYRFRAGSSSPVHHRRDADHRFPSDYNHFPRNRGFGGGRDFGRFRDPPHPYARGR 124
Y R R+ SP+ + R + + H P R R + P R
Sbjct: 11 YHGSKPQRRRSRVPSPLPTLQRWPRRTLNGHRHHPSRHRPSNRRPIQRRQHQPRHRRRRP 190
Query: 125 PGGRPFGRAFDGPGYGHRHGRGEGLHGRNN-----PNVRPREGDWMCPDALCGNLNFARR 179
P P R P + H R LH P R REG RR
Sbjct: 191 PLPPP*RRQQPPPPHLHPRRRLLHLHPLQQRLPPPPQQRRREGK--------------RR 328
Query: 180 DFCNQCKRPRPAAAGSPPRRGSPPLHAPPRRYPGPPFDRSPERPMNGYRSPPPRLMGRDG 239
+R RP PPR G+PP H R P P RP+ + PR
Sbjct: 329 ------RRLRPL----PPRPGAPPPHRLRRHLGSHPVGCRPPRPV----AQGPRRSRSCF 466
Query: 240 LRDYGPAAAA 249
LR P A A
Sbjct: 467 LRPVPPRAGA 496
>BP048276
Length = 498
Score = 38.1 bits (87), Expect = 0.002
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = -1
Query: 160 REGDWMCPDALCGNLNFARRDFCNQCKRPRPAAAGSPP 197
+ GDW+C + C NFA R C +C PR + G P
Sbjct: 429 KSGDWICSRSGCNEHNFANRMECYRCSAPRDSNGGRSP 316
>TC8572 similar to UP|Q9SCM3 (Q9SCM3) 40S ribosomal protein S2 homolog
(At3g57490), partial (91%)
Length = 1076
Score = 37.4 bits (85), Expect = 0.004
Identities = 23/45 (51%), Positives = 24/45 (53%)
Frame = -3
Query: 189 RPAAAGSPPRRGSPPLHAPPRRYPGPPFDRSPERPMNGYRSPPPR 233
RPA PPR SPP PP+ P PP RSP RSPPPR
Sbjct: 186 RPAPLLRPPRPLSPPRPRPPKPRPKPP--RSPPP-----RSPPPR 73
>TC8726 similar to GB|AAO24533.1|27808506|BT003101 At2g41420 {Arabidopsis
thaliana;}, partial (95%)
Length = 820
Score = 36.6 bits (83), Expect = 0.007
Identities = 25/77 (32%), Positives = 30/77 (38%), Gaps = 4/77 (5%)
Frame = +2
Query: 190 PAAAGSPP----RRGSPPLHAPPRRYPGPPFDRSPERPMNGYRSPPPRLMGRDGLRDYGP 245
P G PP + G PP PP+ YP P + P GY PPP + Y P
Sbjct: 146 PPPQGYPPEGYGKDGYPPQGYPPQGYPPPGYP-----PQQGY--PPPPYPAQGYPPPYAP 304
Query: 246 AAAALPPLRHEGRFPDP 262
A PP +H P
Sbjct: 305 QYAQPPPHQHNNNSSGP 355
>AV415208
Length = 242
Score = 36.6 bits (83), Expect = 0.007
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Frame = -3
Query: 171 CGNLNFARRDFC----NQCKRPRPAAAGSPPRRGSPPLHAPPRRYPGPPFDRSPERPMNG 226
C + F R C ++C+ RP+ + SPP SPP+ +PP R P P P+ G
Sbjct: 192 CRSCRFPRSSSCASSSSRCQW-RPSRSSSPPSASSPPVPSPPPRASSLPASSLPWEPLLG 16
Query: 227 YRS 229
S
Sbjct: 15 SES 7
>TC10357 similar to UP|Q9T0K5 (Q9T0K5) Extensin-like protein, partial (3%)
Length = 836
Score = 36.6 bits (83), Expect = 0.007
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Frame = +2
Query: 3 STSPSQSPPSHHHHHQPLLSSLVVRP----SLTENSPPGAAAHSNDY 45
S+ P S P HHHHH +++++RP S+T + P A S Y
Sbjct: 227 SSPPPPSSPLHHHHHPSTTTTVLLRPGTTRSVTTKNSPSATRPSGSY 367
Score = 27.3 bits (59), Expect = 4.3
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = +3
Query: 13 HHHHHQPLLSSLVVRPSLTENSPPGAAAHSN-DYEPGELRRDPP 55
HHHHH+P L + P L PP + D P + RR P
Sbjct: 228 HHHHHRPPLFTTTTIPPL---PPPSFFVQARPDL*PQKTRRQRP 350
>AU251550
Length = 329
Score = 36.2 bits (82), Expect = 0.009
Identities = 24/70 (34%), Positives = 26/70 (36%), Gaps = 5/70 (7%)
Frame = +2
Query: 188 PRPAAAGSPPRRGSPPLHAPPR-----RYPGPPFDRSPERPMNGYRSPPPRLMGRDGLRD 242
P P PP +PP PPR P PPF P +G SPPP M
Sbjct: 92 PPPPGPPQPPGYYNPPPPGPPRDPYAPAPPPPPFGHHHPPPPHGPPSPPPPAMFYQPPPP 271
Query: 243 YGPAAAALPP 252
GP PP
Sbjct: 272 PGPPGPPQPP 301
Score = 31.6 bits (70), Expect = 0.23
Identities = 29/74 (39%), Positives = 31/74 (41%)
Frame = +2
Query: 190 PAAAGSPPRRGSPPLHAPPRRYPGPPFDRSPERPMNGYRSPPPRLMGRDGLRDYGPAAAA 249
P G PP P H PP PGPP + P GY +PPP RD Y PA
Sbjct: 53 PGPPGPPP----PGYHNPPP--PGPP--QPP-----GYYNPPPPGPPRD---PYAPAPPP 184
Query: 250 LPPLRHEGRFPDPH 263
PP H P PH
Sbjct: 185 -PPFGHH-HPPPPH 220
Score = 26.9 bits (58), Expect = 5.6
Identities = 17/51 (33%), Positives = 18/51 (34%), Gaps = 6/51 (11%)
Frame = +2
Query: 188 PRPAAAGSPPRRGSPPLHAPPRRY------PGPPFDRSPERPMNGYRSPPP 232
P P PP PP PP + PGPP P P PPP
Sbjct: 182 PPPFGHHHPPPPHGPPSPPPPAMFYQPPPPPGPPGPPQPPHPPG--PGPPP 328
>TC10237 similar to UP|NO75_SOYBN (P08297) Early nodulin 75 precursor (N-75)
(NGM-75), partial (49%)
Length = 803
Score = 35.8 bits (81), Expect = 0.012
Identities = 16/44 (36%), Positives = 22/44 (49%)
Frame = +1
Query: 189 RPAAAGSPPRRGSPPLHAPPRRYPGPPFDRSPERPMNGYRSPPP 232
+P A PP PP + PP+ P P + ERP G+ +P P
Sbjct: 196 KPPPAYPPPYEKPPPEYEPPQEKPPPVYSPPYERPPTGHPTPYP 327
Score = 32.7 bits (73), Expect = 0.10
Identities = 28/103 (27%), Positives = 40/103 (38%), Gaps = 3/103 (2%)
Frame = +1
Query: 189 RPAAAGSPPRRGSPPLHAPPRRYPGPPFDRSPERPMNGYRSP---PPRLMGRDGLRDYGP 245
+P PP+ PP++ PP P P + E+P Y P PP + Y P
Sbjct: 130 QPPPEYEPPQEKPPPVYLPPYWKPPPAYPPPYEKPPPEYEPPQEKPPPV--------YSP 285
Query: 246 AAAALPPLRHEGRFPDPHLHRERMDYMDDAYRGRGKFDRPPPL 288
PP H +P P H + Y +++PPPL
Sbjct: 286 PYER-PPTGHPTPYP-PFYH------LPPVY--HPPYEKPPPL 384
Score = 30.4 bits (67), Expect = 0.51
Identities = 15/52 (28%), Positives = 22/52 (41%)
Frame = +1
Query: 202 PPLHAPPRRYPGPPFDRSPERPMNGYRSPPPRLMGRDGLRDYGPAAAALPPL 253
PPL PP P P + ++P + Y+ PP +Y P PP+
Sbjct: 52 PPLEKPPHEKPPPEYQPPHKKPPSQYQPPP----------EYEPPQEKPPPV 177
Score = 30.0 bits (66), Expect = 0.66
Identities = 19/65 (29%), Positives = 25/65 (38%)
Frame = +1
Query: 189 RPAAAGSPPRRGSPPLHAPPRRYPGPPFDRSPERPMNGYRSPPPRLMGRDGLRDYGPAAA 248
+P + PP PP PP Y PP+ + P Y PPP +Y P
Sbjct: 112 KPPSQYQPPPEYEPPQEKPPPVYL-PPYWKPPPAYPPPYEKPPP---------EYEPPQE 261
Query: 249 ALPPL 253
PP+
Sbjct: 262 KPPPV 276
Score = 29.3 bits (64), Expect = 1.1
Identities = 14/44 (31%), Positives = 20/44 (44%)
Frame = +1
Query: 189 RPAAAGSPPRRGSPPLHAPPRRYPGPPFDRSPERPMNGYRSPPP 232
+P PP + P + PP Y PP ++ P + Y PPP
Sbjct: 79 KPPPEYQPPHKKPPSQYQPPPEYE-PPQEKPPPVYLPPYWKPPP 207
Score = 26.2 bits (56), Expect = 9.6
Identities = 10/24 (41%), Positives = 12/24 (49%)
Frame = +1
Query: 197 PRRGSPPLHAPPRRYPGPPFDRSP 220
P PPL+ PP Y PP+ P
Sbjct: 451 PPHEKPPLYEPPPGYNPPPYGHYP 522
>TC17431 similar to UP|Q44395 (Q44395) Ti plasmid pTi15955 T-DNA region,
partial (12%)
Length = 737
Score = 35.4 bits (80), Expect = 0.016
Identities = 24/54 (44%), Positives = 26/54 (47%), Gaps = 3/54 (5%)
Frame = +3
Query: 183 NQCKRPRPAAAGSPP--RRGSP-PLHAPPRRYPGPPFDRSPERPMNGYRSPPPR 233
N RPRP G PP RR +P PL AP P PP R +P G PP R
Sbjct: 150 NAASRPRPTRPGEPPSWRRSTPWPLSAPA---PSPPATRC--QPRGGCCGPPRR 296
>AV773398
Length = 496
Score = 35.4 bits (80), Expect = 0.016
Identities = 15/36 (41%), Positives = 17/36 (46%)
Frame = -3
Query: 155 PNVRPREGDWMCPDALCGNLNFARRDFCNQCKRPRP 190
P +P GDW CP C +NFA C C P P
Sbjct: 446 PRPQPNAGDWNCPQ--CPFMNFASNVKCQPCLEPNP 345
Score = 28.1 bits (61), Expect = 2.5
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = -1
Query: 154 NPNVRPREGDWMCPDALCGNLNFARRDFCNQCKRPRP 190
+PN + GDW CP C ++ + C +C RP
Sbjct: 343 HPNPQQYPGDWNCPK--CDFYHYTQNMACLKCHTKRP 239
>AW720050
Length = 436
Score = 35.4 bits (80), Expect = 0.016
Identities = 23/51 (45%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Frame = -1
Query: 188 PRPAAAG--SPPRRGSPPLHAPPRRYP---GPPFDRSPERPMNGYRSPPPR 233
PR A AG +PPR G P PPR P GPP R+ P G + PPR
Sbjct: 364 PRAAGAGLGAPPRAGPGPAAKPPRAGPGAAGPP--RAGPGPPRGAAAAPPR 218
Score = 33.9 bits (76), Expect = 0.046
Identities = 18/44 (40%), Positives = 20/44 (44%)
Frame = -1
Query: 187 RPRPAAAGSPPRRGSPPLHAPPRRYPGPPFDRSPERPMNGYRSP 230
R P A PPR G P PPR PGPP + P G +P
Sbjct: 328 RAGPGPAAKPPRAG-PGAAGPPRAGPGPPRGAAAAPPRGGGATP 200
Score = 31.2 bits (69), Expect = 0.30
Identities = 29/88 (32%), Positives = 30/88 (33%), Gaps = 11/88 (12%)
Frame = -1
Query: 184 QCKRPRPAAAGSP-----------PRRGSPPLHAPPRRYPGPPFDRSPERPMNGYRSPPP 232
Q +P P A G P PR L APPR PGP P R G PP
Sbjct: 436 QGTKPTPRAGGPPAAAAPGGGAAEPRAAGAGLGAPPRAGPGPA--AKPPRAGPGAAGPPR 263
Query: 233 RLMGRDGLRDYGPAAAALPPLRHEGRFP 260
G P AA P R G P
Sbjct: 262 AGPG-------PPRGAAAAPPRGGGATP 200
>TC8296 similar to GB|AAN28790.1|23505861|AY143851 At5g64200/MSJ1_4
{Arabidopsis thaliana;}, partial (55%)
Length = 1276
Score = 35.4 bits (80), Expect = 0.016
Identities = 50/169 (29%), Positives = 58/169 (33%), Gaps = 6/169 (3%)
Frame = +2
Query: 77 SSSPVHHRRDADHRFPSD--YNHFPRNRGFG----GGRDFGRFRDPPHPYARGRPGGRPF 130
S SP RD DHR D Y R+R + G R GR RD R R R
Sbjct: 440 SRSPRRRHRD-DHRSSRDRDYRRRSRSRSYDKYERGDRHRGRDRD-----YRRRSRSRSA 601
Query: 131 GRAFDGPGYGHRHGRGEGLHGRNNPNVRPREGDWMCPDALCGNLNFARRDFCNQCKRPRP 190
+ G RG G + R R D P ARR P P
Sbjct: 602 SLDYKG--------RGRGRYDDEPSRSRSRSVDSRSP---------ARRS-------PSP 709
Query: 191 AAAGSPPRRGSPPLHAPPRRYPGPPFDRSPERPMNGYRSPPPRLMGRDG 239
+ SP R SP PR+ P SP+ RSP PR + G
Sbjct: 710 RRSPSPKRSVSPKRSTSPRK---SPRGESPDNRSRDGRSPTPRSVSPRG 847
>TC16065 weakly similar to UP|Q9SBM1 (Q9SBM1) Hydroxyproline-rich
glycoprotein DZ-HRGP precursor, partial (20%)
Length = 608
Score = 35.4 bits (80), Expect = 0.016
Identities = 19/46 (41%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Frame = +1
Query: 188 PRPAAAGSPPRRGSPPLHAPPRRY-PGPPFDRSPERPMNGYRSPPP 232
PRP PPR PP PP Y P PP P P+ Y PP
Sbjct: 91 PRPLPIPPPPRPPPPPYPPPPPLYPPRPPC*EGPPLPLP*YSGGPP 228
Score = 29.6 bits (65), Expect = 0.87
Identities = 25/70 (35%), Positives = 30/70 (42%), Gaps = 10/70 (14%)
Frame = -1
Query: 103 GFGGGRDFG------RFRDPPHPYARGRPG----GRPFGRAFDGPGYGHRHGRGEGLHGR 152
G+GGG G ++ PP RGR G G G + G GYG GRG G G
Sbjct: 278 GYGGGGRGGHGVPQQQYGGPPEYQGRGRGGPSQQGGRGGYSGGGGGYGGGGGRGGGGMG- 102
Query: 153 NNPNVRPREG 162
+ V P G
Sbjct: 101 SGRGVSPSHG 72
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.319 0.143 0.479
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,462,148
Number of Sequences: 28460
Number of extensions: 219721
Number of successful extensions: 4110
Number of sequences better than 10.0: 385
Number of HSP's better than 10.0 without gapping: 2959
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3736
length of query: 379
length of database: 4,897,600
effective HSP length: 92
effective length of query: 287
effective length of database: 2,279,280
effective search space: 654153360
effective search space used: 654153360
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)
Medicago: description of AC122722.5