TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC122722.4 + phase: 0 
         (307 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP041209                                                              204  2e-53
TC9468 similar to UP|Q9FMN3 (Q9FMN3) Emb|CAB53482.1, partial (72%)    200  3e-52
TC12929 weakly similar to UP|Q9LV43 (Q9LV43) Genomic DNA, chromo...   165  1e-41
TC16279 similar to UP|Q9XE35 (Q9XE35) ESTD24835(R2634) correspon...   143  2e-39
BP048916                                                              134  1e-32
TC9024 similar to UP|Q9XE35 (Q9XE35) ESTD24835(R2634) correspond...    97  3e-21
TC14032 homologue to UP|P93747 (P93747) At2g41990 protein, parti...    80  6e-16
TC17317 homologue to UP|Q84VY4 (Q84VY4) At5g42860, partial (20%)       58  7e-15
TC15300 weakly similar to UP|P93747 (P93747) At2g41990 protein, ...    57  4e-09
AV770823                                                               55  2e-08
BP045611                                                               49  1e-06
TC10094 similar to UP|Q84VY4 (Q84VY4) At5g42860, partial (10%)         45  1e-05
TC7948                                                                 43  8e-05
TC8092 similar to UP|Q8MLI6 (Q8MLI6) CG30127-PA, partial (3%)          40  5e-04
AV409132                                                               38  0.002
TC9679 weakly similar to UP|Q8H1B5 (Q8H1B5) Hin1-like protein, p...    35  0.012
TC8503 similar to GB|AAD30253.1|4835787|F25C20 ESTs gb|R65381 an...    33  0.061
TC18665 similar to UP|O23061 (O23061) BAC IG005I10, partial (65%)      30  0.51
TC9435 similar to UP|Q9AXJ7 (Q9AXJ7) Phosphatase-like protein Mt...    30  0.67
TC14775 PIR|S14181|S14181 DNA-directed RNA polymerase  largest c...    29  0.88

>BP041209 
          Length = 476

 Score =  204 bits (518), Expect = 2e-53
 Identities = 111/163 (68%), Positives = 126/163 (77%), Gaps = 6/163 (3%)
 Frame = +1

Query: 5   TDSDVTSFDPSSPRSQKQTPYYVQSPSRESSHDGDKSSTMQP-----SPMDSPSHQSYGH 59
           TDSDVTSF  SSP    +  Y VQSPSR+S HDG+KS +M       SPM+SPSH SYGH
Sbjct: 1   TDSDVTSFGASSP---PRPVYIVQSPSRDS-HDGEKSPSMHATPASNSPMESPSHPSYGH 168

Query: 60  HSRASSSSRISGGYN-SSFLGRKVNRKVNDKGWIGSKVIEEENGGYGDFDGDGNGVSRRV 118
           HSR SSSSR+SG YN SS LG+K +RK ND+GW   KVIEEE GGYGDF  +  G+SRR 
Sbjct: 169 HSRESSSSRVSGSYNNSSVLGKKGDRKGNDRGWPECKVIEEE-GGYGDFYREDKGLSRRT 345

Query: 119 QFFVAVVGFVLVFSLFCFIIWAASLHYKPQLSVKSLTVHNFYF 161
           QFF+A+VGFVLVF+LFC IIWAAS  YKPQLSVKS+TVHNFYF
Sbjct: 346 QFFLAIVGFVLVFTLFCLIIWAASSPYKPQLSVKSVTVHNFYF 474


>TC9468 similar to UP|Q9FMN3 (Q9FMN3) Emb|CAB53482.1, partial (72%)
          Length = 1317

 Score =  200 bits (508), Expect = 3e-52
 Identities = 124/302 (41%), Positives = 184/302 (60%), Gaps = 12/302 (3%)
 Frame = +3

Query: 1   MHIKTDSDVTSFDPSSP-RSQKQTP-YYVQSPSRESSHDGDKS------STMQPSPMDSP 52
           MH KTDS+VTS   SSP RS  + P Y+VQSPSR+S HDG+K+      ST   SP  SP
Sbjct: 48  MHAKTDSEVTSISASSPARSPPRRPLYFVQSPSRDS-HDGEKTVTTSFHSTPVLSPNASP 224

Query: 53  SHQSYGHHSRASSSSRISGGYNSSFLGRKVNRKVND--KGWIGSKVIEEENGGYGDFDGD 110
            H        +SSS+R S  +      +K N   +   K W    VIEEE    G+ D D
Sbjct: 225 PH--------SSSSTRFSAPHR-----KKDNHHHHHSLKPWKQIDVIEEEGLLQGE-DRD 362

Query: 111 GNGVSRRVQFFVAVVGFVLVFSLFCFIIWAASLHYKPQLSVKSLTVHNFYFGEGSDVTGV 170
              +SRR  F + ++GF+L+F+LF  I+W AS   KP++ +KS+   +     GSD TGV
Sbjct: 363 RT-LSRRCYFLIFLLGFLLLFTLFSLILWGASRPMKPKIFIKSIKFDHVQVQAGSDSTGV 539

Query: 171 PTKMLTVNCSMRMLVHNPATFFGIYVSSKSVNLMYSDLTVATGELKKYHQQRKSRRTVSV 230
            T M+++N +++    N  TFFG++V+S  + L YS++ +A G +K+++Q R+S R VSV
Sbjct: 540 ATDMISMNSTLKFTYRNTGTFFGVHVASTPLELSYSEIVIAAGNMKEFYQHRRSHRLVSV 719

Query: 231 NIQGSKVPLYGAGADVASS--VDNGKISLTLVFEVKSRGNVVGKLVRTKHTQRVSCSIAV 288
            + G+K+PLYG+GA ++S+  +    + L L F ++SR  V+GKLV+ K+ +R+ CSI +
Sbjct: 720 AVMGNKIPLYGSGASLSSTTGMPTVPVPLNLNFVLRSRAYVLGKLVKPKYYKRIQCSITL 899

Query: 289 DP 290
           DP
Sbjct: 900 DP 905


>TC12929 weakly similar to UP|Q9LV43 (Q9LV43) Genomic DNA, chromosome 3, P1
           clone: MOB24, partial (18%)
          Length = 609

 Score =  165 bits (417), Expect = 1e-41
 Identities = 80/139 (57%), Positives = 106/139 (75%), Gaps = 1/139 (0%)
 Frame = +2

Query: 169 GVPTKMLTVNCSMRMLVHNPATFFGIYVSSKSVNLMYSDLTVATGELKKYHQQRKSRRTV 228
           GVPTK+LTVN ++RM ++NPATFFGI+V S  +NL++SD++VATGELKKY+Q RKS R V
Sbjct: 2   GVPTKILTVNSTLRMSIYNPATFFGIHVHSTPINLVFSDISVATGELKKYYQPRKSHRMV 181

Query: 229 SVNIQGSKVPLYGAGADVASSVDN-GKISLTLVFEVKSRGNVVGKLVRTKHTQRVSCSIA 287
           SVN+ G KVPLYGAG+ +  S      +SL L FE+ SRGNVVGKLVRTKH + ++C + 
Sbjct: 182 SVNLVGKKVPLYGAGSTITESQTGVVVVSLKLKFEIVSRGNVVGKLVRTKHHKEITCPLV 361

Query: 288 VDPHNNKYIKLKENECRYN 306
           +D   +K I+ K+N C Y+
Sbjct: 362 IDSSGSKPIQFKKNSCTYD 418


>TC16279 similar to UP|Q9XE35 (Q9XE35) ESTD24835(R2634) corresponds to a
           region of the predicted gene, partial (38%)
          Length = 866

 Score =  143 bits (361), Expect(2) = 2e-39
 Identities = 89/158 (56%), Positives = 107/158 (67%), Gaps = 7/158 (4%)
 Frame = +1

Query: 4   KTDSDVTSFDPSSP-RSQKQTPYYVQSPSRESSHDGDKSSTMQP-----SPMDSPSHQSY 57
           K+DSDVTS  PSSP RS K+  YYVQSPSR+S HDGDKSS+MQ      SPM+SPSH S+
Sbjct: 349 KSDSDVTSLAPSSPSRSPKRPVYYVQSPSRDS-HDGDKSSSMQATPISNSPMESPSHPSF 525

Query: 58  GHHSRASSSSRISGGYNSSFLGRKVNR-KVNDKGWIGSKVIEEENGGYGDFDGDGNGVSR 116
           G HSR SS+SR SG + SS  GRK  R K NDKGW    VI EE G Y +F  +     R
Sbjct: 526 GRHSRNSSASRFSGIFRSS-SGRKSGRGKRNDKGWPECDVILEE-GSYHEF--EDRAFMR 693

Query: 117 RVQFFVAVVGFVLVFSLFCFIIWAASLHYKPQLSVKSL 154
           R Q  +AV  FV+VF++FC IIW AS  +K +++VK L
Sbjct: 694 RCQGLIAVFTFVVVFTVFCLIIWGASRPFKAEVAVKKL 807



 Score = 35.0 bits (79), Expect(2) = 2e-39
 Identities = 13/18 (72%), Positives = 15/18 (83%)
 Frame = +3

Query: 156 VHNFYFGEGSDVTGVPTK 173
           +HN Y GEGSD TG+PTK
Sbjct: 813 LHNLYIGEGSDFTGIPTK 866


>BP048916 
          Length = 555

 Score =  134 bits (338), Expect = 1e-32
 Identities = 73/120 (60%), Positives = 86/120 (70%), Gaps = 7/120 (5%)
 Frame = -2

Query: 193 GIYVSSKSVNLMYSDLTVATG-----ELKKYHQQRKSRRTVSVNIQGSKVPLYGAGADVA 247
           G Y     + LM   LT  TG     ++KKYHQ+RKS  TV VN+QGSKVPLYGAG ++A
Sbjct: 521 GKYAEESFLLLMLIMLTTLTGKFMLLQVKKYHQRRKSTSTVYVNLQGSKVPLYGAGVNLA 342

Query: 248 S--SVDNGKISLTLVFEVKSRGNVVGKLVRTKHTQRVSCSIAVDPHNNKYIKLKENECRY 305
           S   VD+ KI + LVF+VKSRGNVVGKLV +KHT+ VSCS+ VD HNN  IKLKEN CRY
Sbjct: 341 SLVEVDDRKIPVRLVFDVKSRGNVVGKLVTSKHTRHVSCSVPVDSHNNHPIKLKENACRY 162


>TC9024 similar to UP|Q9XE35 (Q9XE35) ESTD24835(R2634) corresponds to a
           region of the predicted gene, partial (8%)
          Length = 588

 Score = 97.1 bits (240), Expect = 3e-21
 Identities = 48/90 (53%), Positives = 62/90 (68%), Gaps = 1/90 (1%)
 Frame = +3

Query: 218 YHQQRKSRRTVSVNIQGSKVPLYGAGADVASSVDNGKI-SLTLVFEVKSRGNVVGKLVRT 276
           Y+Q RKS R VSVN+ G KVPLYGAG+ +  S     + SL L FE+ SRGNVVGKLVRT
Sbjct: 3   YYQPRKSHRMVSVNLVGKKVPLYGAGSTITESQTGVVVVSLKLKFEIVSRGNVVGKLVRT 182

Query: 277 KHTQRVSCSIAVDPHNNKYIKLKENECRYN 306
           KH + ++C + +D   +K IK K+N C Y+
Sbjct: 183 KHHKEITCPLVIDSSGSKPIKFKKNSCTYD 272


>TC14032 homologue to UP|P93747 (P93747) At2g41990 protein, partial (20%)
          Length = 572

 Score = 79.7 bits (195), Expect = 6e-16
 Identities = 64/182 (35%), Positives = 91/182 (49%), Gaps = 17/182 (9%)
 Frame = +2

Query: 2   HIKTDSDVTS-----FDPSSPRSQKQTP-YYVQSPSRESSHDGDKSSTMQPSPMDSPSHQ 55
           H K+DS+VTS        S PRS  + P YYVQSPS   +HD +K S    SP+ SP+H 
Sbjct: 47  HQKSDSEVTSNSMEQSSSSPPRSPPRRPLYYVQSPS---NHDVEKMS-YGSSPVGSPAHH 214

Query: 56  SYG-------HHSRASSSSRISGGYNSSFLGRKVNRKVNDKGWIGSKVIEEENGGYGDFD 108
            +        HHSR SS+SR S    +    R  N +     W   K +  +     D D
Sbjct: 215 HFQYYLSSPIHHSRESSTSRFSASLKNPLPLRHQNHQPLSS-W---KKLHHQTDDDLDDD 382

Query: 109 GDGNGV---SRRVQ-FFVAVVGFVLVFSLFCFIIWAASLHYKPQLSVKSLTVHNFYFGEG 164
            + + V   +R ++ +F   + FVL+F+ F  I+W AS  YKP++ +KS+   N     G
Sbjct: 383 DENDAVYDSTRNIRLYFCFFLLFVLLFTTFSLILWGASKSYKPRVIIKSIVFENLNVQSG 562

Query: 165 SD 166
           SD
Sbjct: 563 SD 568


>TC17317 homologue to UP|Q84VY4 (Q84VY4) At5g42860, partial (20%)
          Length = 566

 Score = 58.2 bits (139), Expect(2) = 7e-15
 Identities = 44/97 (45%), Positives = 52/97 (53%), Gaps = 6/97 (6%)
 Frame = +2

Query: 1   MHIKTDSDVTSFDPSS-PRSQKQTPYYVQSPSRESSHDGDKS-----STMQPSPMDSPSH 54
           MH KTDS+VTS D SS  RS ++  YYVQSP    SHDG+K+     ST   SPM SP H
Sbjct: 137 MHAKTDSEVTSLDASSTTRSPRRPAYYVQSP----SHDGEKTTTSFHSTPVISPMGSPPH 304

Query: 55  QSYGHHSRASSSSRISGGYNSSFLGRKVNRKVNDKGW 91
                    SSSSR SG   S  +    +R  + K W
Sbjct: 305 SH-------SSSSRFSG---SRKMNHHNHRNNSTKPW 385



 Score = 38.1 bits (87), Expect(2) = 7e-15
 Identities = 16/28 (57%), Positives = 20/28 (71%)
 Frame = +3

Query: 115 SRRVQFFVAVVGFVLVFSLFCFIIWAAS 142
           SRR  FF  ++GF L+FSLF  I+W AS
Sbjct: 447 SRRFYFFAFILGFFLLFSLFALILWGAS 530


>TC15300 weakly similar to UP|P93747 (P93747) At2g41990 protein, partial
           (23%)
          Length = 530

 Score = 57.0 bits (136), Expect = 4e-09
 Identities = 28/83 (33%), Positives = 52/83 (61%), Gaps = 3/83 (3%)
 Frame = +1

Query: 215 LKKYHQQRKSRRTVSVNIQGSKVPLYGAGAD---VASSVDNGKISLTLVFEVKSRGNVVG 271
           +K+++ +R S R ++V + G +VPLYG  ++   +   +D   + L L F V+SR  ++G
Sbjct: 34  MKEFYLRRNSHRNLTVVVTGHQVPLYGGVSELGNIKEHLDRVALPLNLTFVVRSRAFILG 213

Query: 272 KLVRTKHTQRVSCSIAVDPHNNK 294
           +LV++K  +R+ CS+ +  H NK
Sbjct: 214 RLVKSKFYRRIRCSVTL--HGNK 276


>AV770823 
          Length = 464

 Score = 54.7 bits (130), Expect = 2e-08
 Identities = 22/46 (47%), Positives = 34/46 (73%)
 Frame = -2

Query: 261 FEVKSRGNVVGKLVRTKHTQRVSCSIAVDPHNNKYIKLKENECRYN 306
           FE+ SRGNVVGKLVRTKH + ++C + +D   ++ I+ ++N C Y+
Sbjct: 460 FEIVSRGNVVGKLVRTKHHKEITCPLVLDSSGSRPIQFQKNSCTYD 323


>BP045611 
          Length = 570

 Score = 48.5 bits (114), Expect = 1e-06
 Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
 Frame = -1

Query: 237 VPLYGAGADVASSVDNGK---ISLTLVFEVKSRGNVVGKLVRTKHTQRVSCSIAVDPHNN 293
           +PLYG GA ++S+        + L L   V+SRG V+GKLV+ K  +++ CS+ +DP   
Sbjct: 567 IPLYGGGASLSSTSGGAPAEALPLKLRVMVRSRGYVLGKLVKPKFNKKIECSVVMDPKKM 388

Query: 294 KYIKLKENECRY 305
                  N+C Y
Sbjct: 387 GAPVSLVNKCIY 352


>TC10094 similar to UP|Q84VY4 (Q84VY4) At5g42860, partial (10%)
          Length = 595

 Score = 45.4 bits (106), Expect = 1e-05
 Identities = 20/52 (38%), Positives = 32/52 (61%)
 Frame = +2

Query: 255 ISLTLVFEVKSRGNVVGKLVRTKHTQRVSCSIAVDPHNNKYIKLKENECRYN 306
           + L L F ++SR  V+GKLV+ K+ +R+ CSI +DP     I   +  C+Y+
Sbjct: 29  VPLKLSFVIRSRAYVLGKLVKPKYYKRIECSITLDPQKINAIVSLKKSCKYD 184


>TC7948 
          Length = 1230

 Score = 42.7 bits (99), Expect = 8e-05
 Identities = 47/205 (22%), Positives = 78/205 (37%), Gaps = 10/205 (4%)
 Frame = +2

Query: 113 GVSRRV--QFFVAVVGFVLVFSLFCFIIWAASLHYKPQLSVKSLTVHNFYFGEGSDVTGV 170
           G  RR   + F  +V F+ +  +   +IWA     KP   ++ +TV+ F           
Sbjct: 374 GAKRRAFRRVFCCIVVFLFIVLVTILLIWAILRPTKPTFILQDVTVYAF--------NAT 529

Query: 171 PTKMLTVNCSMRMLVHNPATFFGIYVSSKSVNLMY-SDLTVATGELKKYHQQRKSRRTVS 229
               LT N  + +   NP    G+Y    S  + Y S        +   +Q  K     S
Sbjct: 530 VPNFLTTNFQVTLTSRNPNEHIGVYYDRLSTYVTYRSQQVTYRTAIPPSYQGHKEFDVWS 709

Query: 230 VNIQGSKVPL-----YGAGADVASSVDNGKISLTLVFEVKSRGNVVGKLVRTKHTQRVSC 284
             + G+ VP+      G G D A    NG + +T+  + + R   VG  V  ++   V C
Sbjct: 710 PFVSGNSVPVAPFNFVGLGQDQA----NGNVFITVKVDGRVRWK-VGAFVSGRYHLYVRC 874

Query: 285 S--IAVDPHNNKYIKLKENECRYNI 307
              I++    N     + N  +Y +
Sbjct: 875 PAYISLGSRGNGVFVGENNAVKYQV 949


>TC8092 similar to UP|Q8MLI6 (Q8MLI6) CG30127-PA, partial (3%)
          Length = 1073

 Score = 40.0 bits (92), Expect = 5e-04
 Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 2/115 (1%)
 Frame = +3

Query: 195 YVSSKSVNLMYSDLTVATGELKKYHQQRKSRRTVSVNIQGSKVPLYGAGADVASSVDN-G 253
           Y+   SV + Y D  +  G L  ++Q   +       ++G  V L  AG+D  + V+   
Sbjct: 528 YLKGSSVEMFYRDSRLCGGALPAFYQASNNVTVFKAVLKGDGVEL--AGSDRTALVNAVA 701

Query: 254 KISLTLVFEVKSRGNV-VGKLVRTKHTQRVSCSIAVDPHNNKYIKLKENECRYNI 307
           K S+ L  ++++   + VG +   K T +V C +AVD    K  K+   +C Y +
Sbjct: 702 KRSVPLTMKLRAPVKIKVGSVKTWKITVKVDCDVAVDQLTAK-SKIVHKDCSYGL 863


>AV409132 
          Length = 405

 Score = 38.1 bits (87), Expect = 0.002
 Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 3/96 (3%)
 Frame = +1

Query: 110 DGNGVSRRVQFFVAVVGFVLVFSLFCFIIWAASLHYKPQLSVKSLTVHNFYFGEGSDVTG 169
           +G  + RR+    AVV F+ +  L  F+IW      KP+  ++  TV  F          
Sbjct: 121 EGRQILRRI--LAAVVAFIFLILLIIFLIWIILRPTKPRFMLQDATVFAFNLSTQQHTPP 294

Query: 170 VPT---KMLTVNCSMRMLVHNPATFFGIYVSSKSVN 202
           + T     LT+   + +  HNP    G+Y  +  V+
Sbjct: 295 LLTPTPNTLTLTLQVTLSSHNPNARIGVYYHALHVH 402


>TC9679 weakly similar to UP|Q8H1B5 (Q8H1B5) Hin1-like protein, partial
           (54%)
          Length = 710

 Score = 35.4 bits (80), Expect = 0.012
 Identities = 41/172 (23%), Positives = 68/172 (38%), Gaps = 4/172 (2%)
 Frame = +2

Query: 121 FVAVVGFVLVFSLFCFIIWAASLHYKPQLSVKSLTVHNFYFGEGSDVTGVPTKMLTVNCS 180
           F  +   +++  +   I W        +  V   T+  F F      TG  T  L  + +
Sbjct: 188 FKLIFTALIIIGIAVLIFWLIVRPNVVKFHVTDATLTQFNF------TGNNT--LNYDLT 343

Query: 181 MRMLVHNPATFFGIYVSSKSVNLMYSDLTVATGELKKYHQQRKSRRTVSVNIQGSK-VPL 239
           + + V NP    GIY        MY D+   T    +++Q  K    +S   +G+  VPL
Sbjct: 344 LNITVRNPNKRLGIYYDYIEARAMYQDVRFDTEFFDRFYQGHKKTNVISRQFKGTHVVPL 523

Query: 240 YGAGADVASSVDNGKISLTLVFEVKSRGNVVGKL--VRTKHTQ-RVSCSIAV 288
              GA+    ++  K       +VK    V  KL   +TK  + +V+C + V
Sbjct: 524 ---GAEETKELNKDKEDGVYGIDVKMYLKVRFKLGVFKTKTLKPKVTCELRV 670


>TC8503 similar to GB|AAD30253.1|4835787|F25C20 ESTs gb|R65381 and
           gb|T44635 come from this gene. {Arabidopsis thaliana;},
           partial (26%)
          Length = 1151

 Score = 33.1 bits (74), Expect = 0.061
 Identities = 28/76 (36%), Positives = 36/76 (46%), Gaps = 6/76 (7%)
 Frame = -3

Query: 7   SDVTSFDP----SSPR--SQKQTPYYVQSPSRESSHDGDKSSTMQPSPMDSPSHQSYGHH 60
           SD T  +P    SSP   S ++TP  V S SR   H     +   P+P  SP HQ  G  
Sbjct: 543 SDSTELNPEVSCSSPARSSARRTPRGVLSESRPDHHARGAGARSSPTP--SPDHQPAGPR 370

Query: 61  SRASSSSRISGGYNSS 76
           + A +  RI GG + S
Sbjct: 369 TPA-TGHRIGGGCSCS 325


>TC18665 similar to UP|O23061 (O23061) BAC IG005I10, partial (65%)
          Length = 451

 Score = 30.0 bits (66), Expect = 0.51
 Identities = 27/75 (36%), Positives = 35/75 (46%)
 Frame = -1

Query: 10  TSFDPSSPRSQKQTPYYVQSPSRESSHDGDKSSTMQPSPMDSPSHQSYGHHSRASSSSRI 69
           +S DP  P+SQ  TPY    P RES      S T  PSP  SPS        + + SS  
Sbjct: 424 SSSDP--PQSQFPTPY----PRRESP-----SQTHPPSPSGSPSPPPSSCTDQTTQSSPS 278

Query: 70  SGGYNSSFLGRKVNR 84
           S   + ++  R+V R
Sbjct: 277 SHPPHKTWEERRVRR 233


>TC9435 similar to UP|Q9AXJ7 (Q9AXJ7) Phosphatase-like protein Mtc923,
           partial (17%)
          Length = 486

 Score = 29.6 bits (65), Expect = 0.67
 Identities = 24/74 (32%), Positives = 30/74 (40%)
 Frame = +2

Query: 6   DSDVTSFDPSSPRSQKQTPYYVQSPSRESSHDGDKSSTMQPSPMDSPSHQSYGHHSRASS 65
           D D    D  SP S+ Q+P +  SPS   S          PSP  SPS   Y   SR S 
Sbjct: 206 DDDENENDAVSP-SEPQSPDFYPSPSPSRS----------PSPSHSPSRAPYELRSRRSL 352

Query: 66  SSRISGGYNSSFLG 79
             + S   + +  G
Sbjct: 353 GKKPSSSSSGTRRG 394


>TC14775 PIR|S14181|S14181 DNA-directed RNA polymerase  largest chain       
                    (isoform B1) - soybean (fragment) {Glycine
           max;}  , partial (22%)
          Length = 848

 Score = 29.3 bits (64), Expect = 0.88
 Identities = 21/66 (31%), Positives = 30/66 (44%)
 Frame = +1

Query: 11  SFDPSSPRSQKQTPYYVQSPSRESSHDGDKSSTMQPSPMDSPSHQSYGHHSRASSSSRIS 70
           ++ PSSPR    +PY   SP    ++     S    SP  SPS  +Y   S  +S   +S
Sbjct: 148 AYSPSSPRLSPSSPYSPTSP----NYSPTSPSYSPTSPSYSPSSPTYSPSSPYNSG--VS 309

Query: 71  GGYNSS 76
             Y+ S
Sbjct: 310 PDYSPS 327


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.316    0.132    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,510,758
Number of Sequences: 28460
Number of extensions: 82691
Number of successful extensions: 799
Number of sequences better than 10.0: 82
Number of HSP's better than 10.0 without gapping: 765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of query: 307
length of database: 4,897,600
effective HSP length: 90
effective length of query: 217
effective length of database: 2,336,200
effective search space: 506955400
effective search space used: 506955400
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)