TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC122169.6 + phase: 0 
         (622 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AV768633                                                               46  2e-05
TC10758                                                                29  2.6
TC8631                                                                 27  9.8

>AV768633 
          Length = 551

 Score = 46.2 bits (108), Expect = 2e-05
 Identities = 22/26 (84%), Positives = 25/26 (95%)
 Frame = -3

Query: 597 MGARVDVRKELIQNAANMIDLDQLDI 622
           MGARVD RKELI+NAANMI++DQLDI
Sbjct: 549 MGARVDGRKELIRNAANMINMDQLDI 472


>TC10758 
          Length = 532

 Score = 28.9 bits (63), Expect = 2.6
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
 Frame = +1

Query: 325 LGNPEVRKVVDQSIQEYLTEYLEL----HPDVLDSVLSKA 360
           L   ++RK++    Q+ L E L+     HPDVLDS+ S A
Sbjct: 169 LAAEDIRKILQPFSQDQLLELLQSASLRHPDVLDSIRSVA 288


>TC8631 
          Length = 552

 Score = 26.9 bits (58), Expect = 9.8
 Identities = 13/31 (41%), Positives = 18/31 (57%), Gaps = 3/31 (9%)
 Frame = +2

Query: 487 DGAHI---RTLLLTFFYRYQRALFDEGYIYV 514
           D AH+   R   + FFY + R + DEG+ YV
Sbjct: 290 DHAHLK*SRQC*VMFFYGFHRPILDEGFSYV 382


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.317    0.136    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,782,254
Number of Sequences: 28460
Number of extensions: 105919
Number of successful extensions: 419
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 419
length of query: 622
length of database: 4,897,600
effective HSP length: 96
effective length of query: 526
effective length of database: 2,165,440
effective search space: 1139021440
effective search space used: 1139021440
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)