BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC122169.4 - phase: 0
(165 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AU251819 33 0.032
TC13478 similar to UP|Q8MRP3 (Q8MRP3) GH08189p, partial (11%) 33 0.032
TC14842 similar to UP|RK4_TOBAC (O80361) 50S ribosomal protein L... 29 0.36
TC19784 weakly similar to UP|Q8S9L3 (Q8S9L3) AT4g38220/F20D10_34... 29 0.47
TC8777 similar to UP|Q9FFD8 (Q9FFD8) Gb|AAF26981.1 (At5g16470), ... 28 0.61
TC8959 28 0.61
BP047228 28 1.0
BP044264 27 1.4
BP055034 27 1.4
TC9115 similar to PIR|T00425|T00425 photolyase/blue-light recept... 27 2.3
TC11510 27 2.3
AV767928 27 2.3
TC17472 similar to UP|Q9FS28 (Q9FS28) Cyclin dependent kinase in... 27 2.3
TC14683 homologue to GB|AAA84544.1|343028|PEACPHD psbA peptide {... 27 2.3
TC12229 similar to UP|O48250 (O48250) Cytochrome b (Fragment), p... 26 3.0
TC9077 26 3.0
BP045804 26 4.0
TC12816 similar to UP|O23292 (O23292) Ankyrin homolog (Ankyrin l... 25 5.2
AV777083 25 5.2
>AU251819
Length = 368
Score = 32.7 bits (73), Expect = 0.032
Identities = 22/67 (32%), Positives = 37/67 (54%)
Frame = +1
Query: 3 SISTSSTSSSVISTVQQKTPTKLTKPKKKKNNNNTYNKPIKVVYISNPMKVKTSASEFRA 62
S S+SS SSS++++V KP +++ +P+ ++Y +P + T F A
Sbjct: 193 SSSSSSISSSLVNSVAGSN-----KPPQQR-------QPV-IIYTHSPRVIHTDPKSFMA 333
Query: 63 LVQELTG 69
LVQ+LTG
Sbjct: 334 LVQKLTG 354
>TC13478 similar to UP|Q8MRP3 (Q8MRP3) GH08189p, partial (11%)
Length = 531
Score = 32.7 bits (73), Expect = 0.032
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Frame = +1
Query: 20 KTPTKLTKPKKKKNNNNTYNKPIK---VVYISNPMKVKTSASEFRALVQELTGQYAESPP 76
K K+ KP + +P + ++Y +P + T+ ++F LVQ LTG A S
Sbjct: 184 KDSHKIKKPPLAPQASQPPQRPPRQPIIIYTVSPKVIHTTPNDFMNLVQRLTGSTASSSS 363
Query: 77 NPSRFQE 83
+ S F +
Sbjct: 364 SSSSFTQ 384
>TC14842 similar to UP|RK4_TOBAC (O80361) 50S ribosomal protein L4,
chloroplast precursor (R-protein L4), partial (51%)
Length = 618
Score = 29.3 bits (64), Expect = 0.36
Identities = 24/76 (31%), Positives = 35/76 (45%)
Frame = +3
Query: 5 STSSTSSSVISTVQQKTPTKLTKPKKKKNNNNTYNKPIKVVYISNPMKVKTSASEFRALV 64
STS++ S S++ P+KL P K N+N+T P V + V + E V
Sbjct: 84 STSTSLSFFSSSIFLSNPSKLKVPTKLSNSNST---PFSVACKLATLPVLSFTGE---KV 245
Query: 65 QELTGQYAESPPNPSR 80
E T +PPN +R
Sbjct: 246 GESTLDLKTAPPNTAR 293
>TC19784 weakly similar to UP|Q8S9L3 (Q8S9L3) AT4g38220/F20D10_340, partial
(21%)
Length = 415
Score = 28.9 bits (63), Expect = 0.47
Identities = 31/118 (26%), Positives = 48/118 (40%)
Frame = +2
Query: 7 SSTSSSVISTVQQKTPTKLTKPKKKKNNNNTYNKPIKVVYISNPMKVKTSASEFRALVQE 66
SS SSS S++Q + K K KKKK ++ + SN K K + + V +
Sbjct: 59 SSFSSSSSSSLQSR*Q*KKKKKKKKKQSS---------LVSSNTSKSKLTN---QTHVTK 202
Query: 67 LTGQYAESPPNPSRFQEFDVNDSGTDQGGCENMMDCDKSDQTVVGVPSLVDPDDKGKP 124
++ PNPS S + QG + + +QT+ +PS P P
Sbjct: 203 KHQSFSSHKPNPSHSNS---KPSSSSQGSLSSF--SNGQEQTLTSLPSCSTPTQTSSP 361
>TC8777 similar to UP|Q9FFD8 (Q9FFD8) Gb|AAF26981.1 (At5g16470), partial
(74%)
Length = 796
Score = 28.5 bits (62), Expect = 0.61
Identities = 13/30 (43%), Positives = 21/30 (69%)
Frame = -3
Query: 3 SISTSSTSSSVISTVQQKTPTKLTKPKKKK 32
SIST + ++I+ ++ T +K+TKPK KK
Sbjct: 647 SISTYPSPDNLITPIKTPT*SKITKPKPKK 558
>TC8959
Length = 444
Score = 28.5 bits (62), Expect = 0.61
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Frame = -1
Query: 16 TVQQKTPTK-LTKPKKKKNNNNTYNKPIKVVYISNPMKVKTSASEF----RALVQELTGQ 70
++ Q+ P + +KP K + TY +PI + I P +TSAS R L +G
Sbjct: 285 SLDQRFPHRSFSKPAKNTSKTFTYARPIYYLSIKIPKAARTSASHLCVVDRRLQDSDSGT 106
Query: 71 YAESPPNP 78
P+P
Sbjct: 105 I*SKTPSP 82
>BP047228
Length = 467
Score = 27.7 bits (60), Expect = 1.0
Identities = 18/54 (33%), Positives = 24/54 (44%)
Frame = +1
Query: 8 STSSSVISTVQQKTPTKLTKPKKKKNNNNTYNKPIKVVYISNPMKVKTSASEFR 61
+T+ + QQKT + K KK NT N P K PMK K + + R
Sbjct: 106 TTTKPKATEPQQKTALNMQKSPKKIQLTNTQNNPRK-----GPMKTKKTKTRKR 252
>BP044264
Length = 461
Score = 27.3 bits (59), Expect = 1.4
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +1
Query: 30 KKKNNNNTYNKPIKVVYISNP 50
+ NNNNTY+ P Y+ NP
Sbjct: 127 ENNNNNNTYSAPPASAYVYNP 189
>BP055034
Length = 515
Score = 27.3 bits (59), Expect = 1.4
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 30 KKKNNNNTYNKPIKVVYISNP 50
+ NNNNTY+ P Y+ NP
Sbjct: 141 ENNNNNNTYSAPPASAYVYNP 203
>TC9115 similar to PIR|T00425|T00425 photolyase/blue-light receptor
(PHR2) [imported] - Arabidopsis thaliana
{Arabidopsis thaliana;}, partial (55%)
Length = 1018
Score = 26.6 bits (57), Expect = 2.3
Identities = 10/31 (32%), Positives = 22/31 (70%)
Frame = +3
Query: 5 STSSTSSSVISTVQQKTPTKLTKPKKKKNNN 35
S+SS+SSS++ + ++ +++ P +K+NN
Sbjct: 21 SSSSSSSSILQNPKMESNSQVPPPSSEKDNN 113
>TC11510
Length = 505
Score = 26.6 bits (57), Expect = 2.3
Identities = 11/23 (47%), Positives = 16/23 (68%)
Frame = -3
Query: 23 TKLTKPKKKKNNNNTYNKPIKVV 45
T L + KKKK N+N YN ++V+
Sbjct: 350 TCLERGKKKKRNSNAYNSNLQVL 282
>AV767928
Length = 600
Score = 26.6 bits (57), Expect = 2.3
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Frame = +1
Query: 5 STSSTSSSVISTVQQKTPTK-----LTKPKKKKNNNNTY-NKPIKVVYISNPMKVKTSAS 58
STS+ SSS +ST +P + T P K N ++ Y P I+ P + TS S
Sbjct: 163 STSTPSSSTMSTPLSSSPNEPGRPVST*PDPKTNPHSPYLTSPTATSTIAQPSRTVTSTS 342
>TC17472 similar to UP|Q9FS28 (Q9FS28) Cyclin dependent kinase inhibitor,
partial (23%)
Length = 465
Score = 26.6 bits (57), Expect = 2.3
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +3
Query: 21 TPTKLTKPKKKKNNNNTYNKP 41
+P + PK++K NNNT KP
Sbjct: 291 SPAQTQTPKRRKINNNTTTKP 353
>TC14683 homologue to GB|AAA84544.1|343028|PEACPHD psbA peptide {Pisum
sativum;} , partial (67%)
Length = 619
Score = 26.6 bits (57), Expect = 2.3
Identities = 12/43 (27%), Positives = 24/43 (54%), Gaps = 1/43 (2%)
Frame = -3
Query: 1 MDSISTSSTSSSVISTVQQKTPTKLT-KPKKKKNNNNTYNKPI 42
+ ++S + + ++ + +K ++ KPKKKK N+N N I
Sbjct: 398 LKALSNKNQTMEIVHAITEKLHFPISLKPKKKKKNSNLSNPKI 270
>TC12229 similar to UP|O48250 (O48250) Cytochrome b (Fragment), partial (8%)
Length = 437
Score = 26.2 bits (56), Expect = 3.0
Identities = 14/39 (35%), Positives = 21/39 (52%), Gaps = 4/39 (10%)
Frame = -1
Query: 22 PTKLTKPKKKK----NNNNTYNKPIKVVYISNPMKVKTS 56
P+K K KK+K NN+ + KP + + NP K+ S
Sbjct: 302 PSKKKKKKKEKTLKVNNSKGHQKPFPLRFRDNPKKLHGS 186
>TC9077
Length = 745
Score = 26.2 bits (56), Expect = 3.0
Identities = 16/60 (26%), Positives = 28/60 (46%)
Frame = +1
Query: 3 SISTSSTSSSVISTVQQKTPTKLTKPKKKKNNNNTYNKPIKVVYISNPMKVKTSASEFRA 62
S S++S + + S PT T+ +T PI + NP +++SAS+ R+
Sbjct: 307 SSSSTSLHNPLSSPSSLPKPTSRTRRFTPSPPRSTSASPISTSSLENPSSLRSSASKSRS 486
>BP045804
Length = 586
Score = 25.8 bits (55), Expect = 4.0
Identities = 18/76 (23%), Positives = 37/76 (48%), Gaps = 10/76 (13%)
Frame = +1
Query: 18 QQKTPTKLTK--------PKKKKNNNNTYNKP--IKVVYISNPMKVKTSASEFRALVQEL 67
++K+PT +T K+K N T P ++ +S+ K +T+ + + +L
Sbjct: 73 EEKSPTYITMN*KLRIRGKKEKCTNQTTIAGPNTLRNSLLSSSNKNQTNNCDSIIPISDL 252
Query: 68 TGQYAESPPNPSRFQE 83
++ PP+P+R Q+
Sbjct: 253 RAPGSDPPPSPTRHQQ 300
>TC12816 similar to UP|O23292 (O23292) Ankyrin homolog (Ankyrin like
protein), partial (14%)
Length = 419
Score = 25.4 bits (54), Expect = 5.2
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +2
Query: 125 SEAGSSNESFDEDVLLMPEMMDNIWDLL 152
++ G SNE F++D L ++ W+LL
Sbjct: 161 ADFGYSNEMFEKDTELWQRRVEKYWNLL 244
>AV777083
Length = 369
Score = 25.4 bits (54), Expect = 5.2
Identities = 9/21 (42%), Positives = 15/21 (70%)
Frame = -2
Query: 22 PTKLTKPKKKKNNNNTYNKPI 42
PT +P +++NNNTY+ P+
Sbjct: 359 PTAQQQPLLQQHNNNTYSTPL 297
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.306 0.125 0.346
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,449,875
Number of Sequences: 28460
Number of extensions: 28768
Number of successful extensions: 216
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of query: 165
length of database: 4,897,600
effective HSP length: 83
effective length of query: 82
effective length of database: 2,535,420
effective search space: 207904440
effective search space used: 207904440
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 52 (24.6 bits)
Medicago: description of AC122169.4