BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC122166.11 + phase: 0
(554 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC8690 similar to UP|Q8RVX1 (Q8RVX1) Pectin methylesterase precu... 486 e-138
TC9337 similar to UP|PME_PRUPE (Q43062) Pectinesterase PPE8B pre... 226 2e-96
TC17355 similar to UP|Q9FF77 (Q9FF77) Pectinesterase, partial (34%) 236 7e-63
TC9501 weakly similar to UP|Q9MBB6 (Q9MBB6) Pectin methylesteras... 233 6e-62
TC10949 similar to UP|PME3_PHAVU (Q43111) Pectinesterase 3 precu... 215 1e-56
TC9624 similar to UP|Q43234 (Q43234) Pectinmethylesterase precur... 197 4e-51
AV426815 142 2e-34
AI967495 133 7e-32
TC16044 similar to UP|CAE76634 (CAE76634) Pectin methylesterase ... 132 1e-31
AV765593 129 9e-31
CN825195 124 4e-29
TC14929 similar to UP|CAE76633 (CAE76633) Pectin methylesterase ... 112 2e-25
BP050971 109 1e-24
TC20170 similar to UP|Q9M5J0 (Q9M5J0) Pectin methylesterase isof... 100 6e-22
BP039243 98 3e-21
BF177669 89 1e-18
TC19984 similar to UP|Q9MBB6 (Q9MBB6) Pectin methylesterase , pa... 86 2e-17
BP033848 84 8e-17
BP031849 75 5e-16
TC11594 similar to UP|Q9FXW9 (Q9FXW9) Pectin methylesterase-like... 81 5e-16
>TC8690 similar to UP|Q8RVX1 (Q8RVX1) Pectin methylesterase precursor
(Pectinesterase) , partial (59%)
Length = 1082
Score = 486 bits (1250), Expect = e-138
Identities = 252/332 (75%), Positives = 285/332 (84%), Gaps = 1/332 (0%)
Frame = +3
Query: 4 QQSLLDKPRKSIPKTFWLVLSLVAIISSSALIISHLNKPISFFNLSSAPNLCEHALDTKS 63
QQSLLDKPRKS KTFWL LSLVAIISSSALI S+L KP SF S P+ CEHALD S
Sbjct: 93 QQSLLDKPRKSFSKTFWLFLSLVAIISSSALIASYL-KPTSFNLFLSPPHGCEHALDASS 269
Query: 64 CLTHVSEVVQGSTLSNTKDHKLSTLVSLLTKSTAHIRKAMDTANVIKRRVNSPREEIALN 123
CL HVSEV Q S +S TKD KL+ L+SL+TKST+HI++AM IK R+N+PREE AL+
Sbjct: 270 CLAHVSEVSQ-SPISATKDPKLNILISLMTKSTSHIQEAMVKTKAIKNRINNPREEAALS 446
Query: 124 DCEELMDLSMDRVWDSVLTLTKNNIDSQHDAHTWLSSVLTNHATCLDGLEGSSRVVMESD 183
DCE+LMDLS+DRVWDSV+ LTK+N DS DAH WLS VLTNHATCLDGLEG SR +ME++
Sbjct: 447 DCEQLMDLSIDRVWDSVMALTKDNTDSHQDAHAWLSGVLTNHATCLDGLEGPSRALMEAE 626
Query: 184 LHDLISRARSSLAVLVSVLPPKA-NDGFIDEKLNGDFPSWVTSKDRRLLESSVGDIKANV 242
+ DLISR+++SLA+LVSVL PK N+ IDE L+GDFPSWVT KDRRLLESSVGD+ ANV
Sbjct: 627 IEDLISRSKTSLALLVSVLAPKGGNEQIIDEPLDGDFPSWVTRKDRRLLESSVGDVNANV 806
Query: 243 VVAQDGSGKFKTVAQAVASAPDNGKTRYVIYVKKGTYKENIEIGKKKTNVMLVGDGMDAT 302
VVA+DGSG+FKTVA+AVASAPD+GKTRYVIYVKKGTYKENIEIGKKKTNVML GDGMDAT
Sbjct: 807 VVAKDGSGRFKTVAEAVASAPDSGKTRYVIYVKKGTYKENIEIGKKKTNVMLTGDGMDAT 986
Query: 303 IITGSLNFIDGTTTFKSATVAAVGDGFIAQDI 334
IITG+LN IDG+TTFKSATVAAVGDGFIAQDI
Sbjct: 987 IITGNLNVIDGSTTFKSATVAAVGDGFIAQDI 1082
>TC9337 similar to UP|PME_PRUPE (Q43062) Pectinesterase PPE8B precursor
(Pectin methylesterase) (PE) , partial (54%)
Length = 1145
Score = 226 bits (577), Expect(2) = 2e-96
Identities = 111/184 (60%), Positives = 139/184 (75%)
Frame = +2
Query: 247 DGSGKFKTVAQAVASAPDNGKTRYVIYVKKGTYKENIEIGKKKTNVMLVGDGMDATIITG 306
DGSG + TV +AV +APD R+VIYVKKG Y+E EI KKK N+M+VGDGMD T+I+G
Sbjct: 29 DGSGNYTTVMEAVLAAPDYSMKRFVIYVKKGVYEEYAEIKKKKWNIMMVGDGMDVTVISG 208
Query: 307 SLNFIDGTTTFKSATVAAVGDGFIAQDIRFQNTAGPQKHQAVALRVGADQSVINRCKIDA 366
+ +F DG TTFKSAT A G GFIA+ I FQNTAGP+KHQAVALR +D +V RC I
Sbjct: 209 NRSFGDGWTTFKSATFAVSGRGFIARGITFQNTAGPEKHQAVALRSDSDLAVFFRCSITG 388
Query: 367 FQDTLYAHSNRQFYRDSYITGTVDFIFGNAAVVFQKSKLAARKPMANQKNMVTAQGREDP 426
+QD+LY H+ RQFY++ ITGTVDFIFG+A VFQ + ARK + +QKN +TAQGR+DP
Sbjct: 389 YQDSLYPHTMRQFYKECRITGTVDFIFGDATAVFQNCNIQARKGLQDQKNTITAQGRKDP 568
Query: 427 NQNT 430
Q++
Sbjct: 569 GQSS 580
Score = 143 bits (360), Expect(2) = 2e-96
Identities = 67/123 (54%), Positives = 87/123 (70%)
Frame = +3
Query: 432 TSIQQCDVIPSSDLKPVQGSIKTYLGRPWKKYSRTVVLQSVVDGHIDPAGWAEWDAASKD 491
+S Q C++ S+L P GSI+TYLGRPWK+YSRTV +QS + + GW EW+ + D
Sbjct: 585 SSFQYCNITADSELLPSVGSIQTYLGRPWKEYSRTVFMQSFMSDVVSSQGWLEWNTSFDD 764
Query: 492 FLQTLYYGEYMNSGAGAGTGKRVTWPGYHIIKNAAEASKFTVTQLIQGNVWLKNTGVAFI 551
TL+YGEY+N GAGAG G RV W GYH++ N +EA KFTV Q I+GN+WL +TGVA+
Sbjct: 765 ---TLFYGEYLNYGAGAGVGNRVKWGGYHVL-NDSEAGKFTVNQFIEGNLWLPSTGVAYT 932
Query: 552 EGL 554
GL
Sbjct: 933 GGL 941
>TC17355 similar to UP|Q9FF77 (Q9FF77) Pectinesterase, partial (34%)
Length = 848
Score = 236 bits (602), Expect = 7e-63
Identities = 123/244 (50%), Positives = 164/244 (66%), Gaps = 6/244 (2%)
Frame = +1
Query: 224 TSKDRRLLESSVGDIKAN---VVVAQDGSGKFKTVAQAVASAPDNGKTR---YVIYVKKG 277
T +R L ES + N +V +G+ + ++ A+A+AP++ K + ++IYV++G
Sbjct: 94 TRTERILKESENQGVLLNDFVIVSPYNGTDNYTSIGDAIAAAPNHTKPQDGYFLIYVREG 273
Query: 278 TYKENIEIGKKKTNVMLVGDGMDATIITGSLNFIDGTTTFKSATVAAVGDGFIAQDIRFQ 337
Y+E + + K+K N++LVGDG++ TIITG+ + IDG TTF S+T A G+ F A D+ F+
Sbjct: 274 YYEEYVIVPKEKKNILLVGDGINKTIITGNHSVIDGWTTFNSSTFAVSGERFTAVDVTFR 453
Query: 338 NTAGPQKHQAVALRVGADQSVINRCKIDAFQDTLYAHSNRQFYRDSYITGTVDFIFGNAA 397
NTAGP KHQAVA+R AD S RC + +QDTLY HS RQFYR+ I GTVDFIFGNAA
Sbjct: 454 NTAGPAKHQAVAVRNNADLSTFYRCSFEGYQDTLYVHSLRQFYRECDIYGTVDFIFGNAA 633
Query: 398 VVFQKSKLAARKPMANQKNMVTAQGREDPNQNTATSIQQCDVIPSSDLKPVQGSIKTYLG 457
VVFQ + ARKP+ QKN VTAQGR DPNQNT SIQ C + + DL S +YLG
Sbjct: 634 VVFQNCNIYARKPLPFQKNAVTAQGRTDPNQNTGISIQNCTIDAAPDLAAELNSTLSYLG 813
Query: 458 RPWK 461
RPW+
Sbjct: 814 RPWE 825
>TC9501 weakly similar to UP|Q9MBB6 (Q9MBB6) Pectin methylesterase ,
partial (29%)
Length = 934
Score = 233 bits (594), Expect = 6e-62
Identities = 121/248 (48%), Positives = 154/248 (61%), Gaps = 5/248 (2%)
Frame = +2
Query: 302 TIITGSLNFIDGTTTFKSATVAAVGDGFIAQDIRFQNTAGPQKHQAVALRVGADQSVINR 361
TIITG NF DG T ++AT A GFIA+ I F+NTAGP HQAVALR DQS
Sbjct: 14 TIITGRKNFADGVKTMQTATFANQAPGFIAKAITFENTAGPNGHQAVALRNQGDQSAFVG 193
Query: 362 CKIDAFQDTLYAHSNRQFYRDSYITGTVDFIFGNAAVVFQKSKLAARKPMANQKNMVTAQ 421
C I +QDTLY +NRQFYR+ I+GT+DFIFG + + Q S + RKP NQ N VTA
Sbjct: 194 CHILGYQDTLYVQTNRQFYRNCVISGTIDFIFGTSPTLIQHSIIVVRKPNDNQFNTVTAD 373
Query: 422 GREDPNQNTATSIQQCDVIPSSDLKPVQGSIKTYLGRPWKKYSRTVVLQSVVDGHIDPAG 481
G N T IQ C+++P + L PV+ IK+YLGRPWK+YSRTVV++S + I P G
Sbjct: 374 GTPTKNMPTGIVIQDCEIVPEAALFPVRFKIKSYLGRPWKEYSRTVVMESTLGDFIHPEG 553
Query: 482 WAEWDAASKDFLQTLYYGEYMNSGAGAGTGKRVTWPGYHIIKNAAEASKFTVTQLIQ--- 538
W W A L TLYY E+ N+G GA T R+ W GY + + AEA++FT + ++
Sbjct: 554 WFPW--AGSFALDTLYYAEHANTGPGANTAGRIKWKGYRGVISRAEATQFTAGEFLKAGP 727
Query: 539 --GNVWLK 544
G W+K
Sbjct: 728 RSGLDWIK 751
>TC10949 similar to UP|PME3_PHAVU (Q43111) Pectinesterase 3 precursor
(Pectin methylesterase 3) (PE 3) , partial (34%)
Length = 773
Score = 215 bits (548), Expect = 1e-56
Identities = 105/207 (50%), Positives = 134/207 (64%)
Frame = +3
Query: 344 KHQAVALRVGADQSVINRCKIDAFQDTLYAHSNRQFYRDSYITGTVDFIFGNAAVVFQKS 403
KHQAVA+R G+D+SV RC D FQDTLYAHSNRQFYR+ ITGT+DFIFGNAA +FQ
Sbjct: 6 KHQAVAMRSGSDRSVFYRCSFDGFQDTLYAHSNRQFYRECDITGTIDFIFGNAASIFQNC 185
Query: 404 KLAARKPMANQKNMVTAQGREDPNQNTATSIQQCDVIPSSDLKPVQGSIKTYLGRPWKKY 463
K+ R+PM NQ +TAQG++DPNQNT IQ+ + P + TYLGRPWK +
Sbjct: 186 KIMPRQPMPNQFYTITAQGKKDPNQNTGIVIQKSTITPLESTY----TAPTYLGRPWKDF 353
Query: 464 SRTVVLQSVVDGHIDPAGWAEWDAASKDFLQTLYYGEYMNSGAGAGTGKRVTWPGYHIIK 523
S T+++QS + + P GW W A+ D T++Y E+ NSG G+ +RV W GY
Sbjct: 354 STTLIMQSEIGSFLKPVGWVSW-VANVDPPATIFYAEHQNSGPGSDVAQRVKWTGYKSTL 530
Query: 524 NAAEASKFTVTQLIQGNVWLKNTGVAF 550
A + KFT+ IQG WL +T VAF
Sbjct: 531 TADDLGKFTLASFIQGPEWLPDTAVAF 611
>TC9624 similar to UP|Q43234 (Q43234) Pectinmethylesterase precursor
(Pectinesterase) (Pectin methylesterase) (Fragment) ,
partial (33%)
Length = 586
Score = 197 bits (501), Expect = 4e-51
Identities = 90/105 (85%), Positives = 95/105 (89%)
Frame = +3
Query: 450 GSIKTYLGRPWKKYSRTVVLQSVVDGHIDPAGWAEWDAASKDFLQTLYYGEYMNSGAGAG 509
GSIKTYLGRPWKKYSRT+VLQS +D HIDP GWAEWDA SKDFLQTLYYGEY+NSGAGAG
Sbjct: 6 GSIKTYLGRPWKKYSRTIVLQSSIDSHIDPTGWAEWDAQSKDFLQTLYYGEYLNSGAGAG 185
Query: 510 TGKRVTWPGYHIIKNAAEASKFTVTQLIQGNVWLKNTGVAFIEGL 554
TGKRV WPG+H+IK AAEASKFTV QLIQGNVWLK GV FIEGL
Sbjct: 186 TGKRVNWPGFHVIKTAAEASKFTVAQLIQGNVWLKGKGVNFIEGL 320
>AV426815
Length = 391
Score = 142 bits (357), Expect = 2e-34
Identities = 68/111 (61%), Positives = 87/111 (78%)
Frame = +3
Query: 219 FPSWVTSKDRRLLESSVGDIKANVVVAQDGSGKFKTVAQAVASAPDNGKTRYVIYVKKGT 278
+P W+++ DRRLL++ G +KA+VVVA DGSG FKTV+ AVA+AP+ KTRYVI +K G
Sbjct: 63 WPEWISAADRRLLQA--GTVKADVVVAADGSGNFKTVSAAVAAAPEKSKTRYVIKIKAGV 236
Query: 279 YKENIEIGKKKTNVMLVGDGMDATIITGSLNFIDGTTTFKSATVAAVGDGF 329
Y+EN+E+ KKKTN+M +GDG TIITGS N +DG+TTF SATVA VG F
Sbjct: 237 YRENVEVPKKKTNIMFLGDGRTTTIITGSRNVVDGSTTFHSATVAVVGGNF 389
>AI967495
Length = 390
Score = 133 bits (335), Expect = 7e-32
Identities = 61/113 (53%), Positives = 79/113 (68%)
Frame = +1
Query: 374 HSNRQFYRDSYITGTVDFIFGNAAVVFQKSKLAARKPMANQKNMVTAQGREDPNQNTATS 433
H+ RQFY+ I GTVD IFGNAAVVFQ K+ A+KP+ Q NM+TAQGR+DP QNT +
Sbjct: 19 HAQRQFYKQCQIYGTVDLIFGNAAVVFQNCKIFAKKPLDGQANMITAQGRDDPFQNTGIT 198
Query: 434 IQQCDVIPSSDLKPVQGSIKTYLGRPWKKYSRTVVLQSVVDGHIDPAGWAEWD 486
I ++ + DLKPV T LGRPW++YSR VVL++ +D + P GW+ WD
Sbjct: 199 IHNSEIRAAPDLKPVVNKHNTSLGRPWQQYSRVVVLKTFMDTLVSPLGWSSWD 357
>TC16044 similar to UP|CAE76634 (CAE76634) Pectin methylesterase (Fragment)
, partial (43%)
Length = 564
Score = 132 bits (332), Expect = 1e-31
Identities = 62/110 (56%), Positives = 73/110 (66%)
Frame = +3
Query: 445 LKPVQGSIKTYLGRPWKKYSRTVVLQSVVDGHIDPAGWAEWDAASKDFLQTLYYGEYMNS 504
LK S +TYLGRPWK YSRTV + S + H+ GW EW+ L TLYYGEYMN
Sbjct: 3 LKASNDSFETYLGRPWKLYSRTVYMMSYIGDHVHQRGWLEWNTTFA--LDTLYYGEYMNY 176
Query: 505 GAGAGTGKRVTWPGYHIIKNAAEASKFTVTQLIQGNVWLKNTGVAFIEGL 554
G GA G+RV WPGY +I +A EAS+FTV Q I G WL +TGVAF+ GL
Sbjct: 177 GPGAAVGQRVNWPGYRVITSALEASRFTVAQFILGATWLPSTGVAFLSGL 326
>AV765593
Length = 501
Score = 129 bits (325), Expect = 9e-31
Identities = 63/127 (49%), Positives = 82/127 (63%)
Frame = -1
Query: 428 QNTATSIQQCDVIPSSDLKPVQGSIKTYLGRPWKKYSRTVVLQSVVDGHIDPAGWAEWDA 487
Q+T TSI C + + DL G+ TYLGRPWK+YSRTV +Q+ +D ID AGW WD
Sbjct: 501 QDTGTSIHNCTIRAADDLASSNGATATYLGRPWKEYSRTVYMQTSMDNVIDSAGWRAWD- 325
Query: 488 ASKDFLQTLYYGEYMNSGAGAGTGKRVTWPGYHIIKNAAEASKFTVTQLIQGNVWLKNTG 547
+ L TLYY E+ NSG G+ T RVTW GYH+I NA +A+ FTV+ + G+ WL TG
Sbjct: 324 -GEFALSTLYYAEFNNSGPGSNTNGRVTWQGYHVI-NATDAANFTVSNFLLGDDWLPQTG 151
Query: 548 VAFIEGL 554
V++ L
Sbjct: 150 VSYTNTL 130
>CN825195
Length = 551
Score = 124 bits (311), Expect = 4e-29
Identities = 72/178 (40%), Positives = 107/178 (59%), Gaps = 9/178 (5%)
Frame = +2
Query: 162 LTNHATCLDGLEGSSRVV---MESDLHDLISRARSSLAVLVSVLPPKANDGFIDEKL--- 215
LTN TC DG +S V M +L DL + LA+ + + +L
Sbjct: 17 LTNQDTCADGFADTSGDVKDQMAVNLKDLSELVSNCLAIFAGAGDDFSGVPIQNRRLLAM 196
Query: 216 -NGDFPSWVTSKDRRLLESSVGDIKANVVVAQDGSGKFKTVAQAVASAPDNGKTRYVIYV 274
+ +FP W+ +DRRLL V ++A+VVV++DG+G KT+A+A+ P+ G R++IYV
Sbjct: 197 RDDNFPRWLNRRDRRLLSLPVSAMQADVVVSKDGNGTAKTIAEAIKKVPEYGSRRFIIYV 376
Query: 275 KKGTYKE-NIEIGKKKTNVMLVGDGMDATIITGSLNFIDG-TTTFKSATVAAVGDGFI 330
+ G Y+E N++IG+K+TNVM++GDG T+ITG N + G TTF +A+ AA G GFI
Sbjct: 377 RAGRYEENNLKIGRKRTNVMIIGDGKGKTVITGGKNVMYGLLTTFHTASFAASGAGFI 550
>TC14929 similar to UP|CAE76633 (CAE76633) Pectin methylesterase (Fragment)
, partial (24%)
Length = 693
Score = 112 bits (279), Expect = 2e-25
Identities = 59/110 (53%), Positives = 70/110 (63%), Gaps = 1/110 (0%)
Frame = +2
Query: 446 KPVQGSIKTYLGRPWKKYSRTVVLQSVVDGHIDPAGWAEWDAASKDF-LQTLYYGEYMNS 504
+PV+ S TYLGRPWK+YSRTV +QS + IDPAGW EW S +F L TL Y EY
Sbjct: 2 EPVKYSFPTYLGRPWKEYSRTVFMQSSISDVIDPAGWHEW---SGNFALNTLVYREYQYP 172
Query: 505 GAGAGTGKRVTWPGYHIIKNAAEASKFTVTQLIQGNVWLKNTGVAFIEGL 554
G GAGT KRV W G +I +A+EA FT I G+ WL +TG F GL
Sbjct: 173 GPGAGTSKRVAWKGVKVITSASEAQAFTPGSFIAGSNWLGSTGFPFSLGL 322
>BP050971
Length = 477
Score = 109 bits (272), Expect = 1e-24
Identities = 50/111 (45%), Positives = 71/111 (63%)
Frame = -1
Query: 444 DLKPVQGSIKTYLGRPWKKYSRTVVLQSVVDGHIDPAGWAEWDAASKDFLQTLYYGEYMN 503
D +P GSI T+LGRPWK +SRTV ++S + I P GW EW+ + + L++GEY N
Sbjct: 471 DFQPSNGSIPTFLGRPWKNFSRTVFMESFMSEMIHPEGWLEWETYT-TYDDPLFFGEYPN 295
Query: 504 SGAGAGTGKRVTWPGYHIIKNAAEASKFTVTQLIQGNVWLKNTGVAFIEGL 554
G G+G RV W GYH++ N + A FTV I+G++WL + GV++ GL
Sbjct: 294 KGPGSGVANRVKWRGYHVLNN-SPAMDFTVNPFIKGDLWLPSPGVSYHAGL 145
>TC20170 similar to UP|Q9M5J0 (Q9M5J0) Pectin methylesterase isoform alpha
(Fragment) , partial (32%)
Length = 592
Score = 100 bits (249), Expect = 6e-22
Identities = 48/90 (53%), Positives = 60/90 (66%)
Frame = +1
Query: 461 KKYSRTVVLQSVVDGHIDPAGWAEWDAASKDFLQTLYYGEYMNSGAGAGTGKRVTWPGYH 520
K YSRTV L+S ++ IDPAGW EW+ L TLYYGEY N G G+ RV W GY
Sbjct: 1 KLYSRTVFLKSYMEDLIDPAGWLEWNDTFA--LDTLYYGEYQNRGPGSNPSARVKWGGYR 174
Query: 521 IIKNAAEASKFTVTQLIQGNVWLKNTGVAF 550
+I ++ EAS+FTV Q IQG+ WL +TG+ F
Sbjct: 175 VINSSTEASQFTVGQFIQGSDWLNSTGIPF 264
>BP039243
Length = 462
Score = 98.2 bits (243), Expect = 3e-21
Identities = 45/91 (49%), Positives = 67/91 (73%)
Frame = -2
Query: 235 VGDIKANVVVAQDGSGKFKTVAQAVASAPDNGKTRYVIYVKKGTYKENIEIGKKKTNVML 294
V + + ++VVA+DG+G F + +AVA+AP++ TR+VI++K G Y EN+E+ +KKTNVM
Sbjct: 461 VNETQFDLVVAKDGTGNFAPIGEAVAAAPNSRATRFVIHIKAGAYFENVEVIRKKTNVMF 282
Query: 295 VGDGMDATIITGSLNFIDGTTTFKSATVAAV 325
VGDG+ T++ N +DG TTF SATV A+
Sbjct: 281 VGDGIGKTVVKAHRNVVDGWTTFPSATVGAL 189
>BF177669
Length = 336
Score = 89.4 bits (220), Expect = 1e-18
Identities = 49/101 (48%), Positives = 57/101 (55%)
Frame = +3
Query: 433 SIQQCDVIPSSDLKPVQGSIKTYLGRPWKKYSRTVVLQSVVDGHIDPAGWAEWDAASKDF 492
SIQ C + P +L VQ TYLGRPWK YS TVV+QS + I P GW W S
Sbjct: 48 SIQNCSISPFGNLSYVQ----TYLGRPWKNYSTTVVMQSTLGSFISPNGWLPWVGNSAP- 212
Query: 493 LQTLYYGEYMNSGAGAGTGKRVTWPGYHIIKNAAEASKFTV 533
T++Y EY N G GA T RV W G I + +ASKFTV
Sbjct: 213 -DTIFYAEYQNVGQGASTKNRVKWKGLKTI-TSKQASKFTV 329
>TC19984 similar to UP|Q9MBB6 (Q9MBB6) Pectin methylesterase , partial (11%)
Length = 300
Score = 85.9 bits (211), Expect = 2e-17
Identities = 41/80 (51%), Positives = 54/80 (67%)
Frame = +3
Query: 219 FPSWVTSKDRRLLESSVGDIKANVVVAQDGSGKFKTVAQAVASAPDNGKTRYVIYVKKGT 278
FPSWV DRRLL+++ K NV VA+DGSG FKT+++A+ P K RYV+YVK+G
Sbjct: 51 FPSWVHVDDRRLLKAADNRPKPNVTVAKDGSGDFKTISEALNKIPATYKGRYVVYVKEGV 230
Query: 279 YKENIEIGKKKTNVMLVGDG 298
Y E + + KK NV + GDG
Sbjct: 231 YDEQVTVTKKMQNVTMYGDG 290
>BP033848
Length = 525
Score = 83.6 bits (205), Expect = 8e-17
Identities = 57/173 (32%), Positives = 84/173 (47%), Gaps = 26/173 (15%)
Frame = +2
Query: 146 NNIDSQH----DAHTWLSSVLTNHATCLDGLE----GSSRV---VMESDLHDL------- 187
NNI + H D WLS+V++ +C++G E G V + E L +
Sbjct: 5 NNIQAVHEQTPDFRNWLSAVMSYQQSCMEGFEDGKSGEEAVKGQLQEGSLDQMGKLTGIA 184
Query: 188 ------ISRARSSLAVLVSVLPPKANDGFIDEKLNGDFPSWVTSKDRRLLESSV--GDIK 239
+SR + + + + P +E + PSW + DR+LL G +
Sbjct: 185 LDIVSDLSRILQTFDLKLDLNPASRRLLEAEEVDHEGLPSWFSGADRKLLGKMKKGGKVT 364
Query: 240 ANVVVAQDGSGKFKTVAQAVASAPDNGKTRYVIYVKKGTYKENIEIGKKKTNV 292
N VVA+DGSGKFKT+A A+AS P K RY+IYV+ G Y E I + K+ N+
Sbjct: 365 PNAVVAKDGSGKFKTIASAIASYPKGFKGRYIIYVRAGVYDEYITVPKQAVNL 523
>BP031849
Length = 510
Score = 75.1 bits (183), Expect(2) = 5e-16
Identities = 30/58 (51%), Positives = 44/58 (75%)
Frame = +2
Query: 493 LQTLYYGEYMNSGAGAGTGKRVTWPGYHIIKNAAEASKFTVTQLIQGNVWLKNTGVAF 550
L + YYGEYMN G+GA T RV WPG+H++++A EA+ FTV++ +QG+ W+ +GV F
Sbjct: 71 LYSXYYGEYMNIGSGASTQNRVNWPGFHVLRSAGEAAPFTVSRFLQGDRWIPASGVPF 244
Score = 26.2 bits (56), Expect(2) = 5e-16
Identities = 9/17 (52%), Positives = 12/17 (69%)
Frame = +3
Query: 469 LQSVVDGHIDPAGWAEW 485
++S +DG I P GW EW
Sbjct: 3 MKSDLDGLIHPRGWGEW 53
>TC11594 similar to UP|Q9FXW9 (Q9FXW9) Pectin methylesterase-like protein,
partial (18%)
Length = 532
Score = 80.9 bits (198), Expect = 5e-16
Identities = 40/98 (40%), Positives = 59/98 (59%), Gaps = 4/98 (4%)
Frame = +3
Query: 453 KTYLGRPWKKYSRTVVLQSVVDGHIDPAGWAEWDAASKDFLQTLYYGEYMNSGAGAGTGK 512
K YLGRPWK+YSRTV + S+++ + P GW W+ + L+TLYYGE+ NSG G+
Sbjct: 63 KNYLGRPWKEYSRTVFIHSLLEALVTPQGWMPWN--GEFALKTLYYGEFENSGPGSDLSL 236
Query: 513 RVTW----PGYHIIKNAAEASKFTVTQLIQGNVWLKNT 546
RV+W P H++ +AE IQG+ W+ ++
Sbjct: 237 RVSWSSKVPAEHVLTYSAE-------NFIQGDDWIPSS 329
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.316 0.131 0.377
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,460,865
Number of Sequences: 28460
Number of extensions: 106300
Number of successful extensions: 568
Number of sequences better than 10.0: 70
Number of HSP's better than 10.0 without gapping: 530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 534
length of query: 554
length of database: 4,897,600
effective HSP length: 95
effective length of query: 459
effective length of database: 2,193,900
effective search space: 1007000100
effective search space used: 1007000100
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)
Medicago: description of AC122166.11