BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC122166.1 + phase: 0
(55 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC8084 similar to UP|PIF1_YEAST (P07271) DNA repair and recombin... 57 7e-10
TC15490 weakly similar to UP|Q9LTU4 (Q9LTU4) Helicase-like prote... 44 7e-06
BP065488 42 3e-05
TC14212 similar to UP|Q9FN61 (Q9FN61) Gb|AAF07369.1, partial (10%) 41 6e-05
TC8086 similar to UP|DMC1_HUMAN (Q14565) Meiotic recombination p... 38 5e-04
BP046665 32 0.026
BP081760 27 0.63
TC12046 26 1.4
TC9013 25 2.4
TC15803 25 4.1
AV778595 24 5.4
AV770299 24 7.0
AV421913 23 9.1
>TC8084 similar to UP|PIF1_YEAST (P07271) DNA repair and recombination
protein PIF1, mitochondrial precursor, partial (4%)
Length = 560
Score = 57.0 bits (136), Expect = 7e-10
Identities = 26/55 (47%), Positives = 40/55 (72%)
Frame = +1
Query: 1 MSVWIHLCYFSHGQLYVAISRVTSRGGLKILINDDDGDDTDVASSVIYREVSRNV 55
+S+++ F+HGQLYVA+SRV SR GLK+L+ D++ T+ +V+YREV N+
Sbjct: 283 VSLYLSRPVFTHGQLYVALSRVRSRKGLKLLVLDEEEKVTNTTKNVVYREVFENI 447
>TC15490 weakly similar to UP|Q9LTU4 (Q9LTU4) Helicase-like protein, partial
(8%)
Length = 634
Score = 43.9 bits (102), Expect = 7e-06
Identities = 20/45 (44%), Positives = 31/45 (68%)
Frame = +2
Query: 11 SHGQLYVAISRVTSRGGLKILINDDDGDDTDVASSVIYREVSRNV 55
+HG LYVA+ RV SR LK+L+ D++ T+ +V+YRE+ N+
Sbjct: 341 THG*LYVALPRVRSRK*LKLLVLDEEEKMTNTTKNVVYREIFENI 475
>BP065488
Length = 439
Score = 41.6 bits (96), Expect = 3e-05
Identities = 19/48 (39%), Positives = 31/48 (64%)
Frame = -1
Query: 8 CYFSHGQLYVAISRVTSRGGLKILINDDDGDDTDVASSVIYREVSRNV 55
CY +LYVA+S V SR GLK+L+ ++ T+ + +Y+EV +N+
Sbjct: 211 CYSHMDKLYVALSGVRSRKGLKLLVLGEEEKVTNATKNEVYQEVFKNI 68
>TC14212 similar to UP|Q9FN61 (Q9FN61) Gb|AAF07369.1, partial (10%)
Length = 613
Score = 40.8 bits (94), Expect = 6e-05
Identities = 18/41 (43%), Positives = 27/41 (64%)
Frame = +2
Query: 15 LYVAISRVTSRGGLKILINDDDGDDTDVASSVIYREVSRNV 55
LYVA+SRV S+ GLKILI+ D +++Y+EV + +
Sbjct: 2 LYVAVSRVKSKDGLKILISSDGTSTPGATKNIVYKEVFQKI 124
>TC8086 similar to UP|DMC1_HUMAN (Q14565) Meiotic recombination protein
DMC1/LIM15 homolog, partial (12%)
Length = 628
Score = 37.7 bits (86), Expect = 5e-04
Identities = 17/36 (47%), Positives = 25/36 (69%)
Frame = +3
Query: 20 SRVTSRGGLKILINDDDGDDTDVASSVIYREVSRNV 55
SRV SR GLK+L+ D++ T+ +V+YREV N+
Sbjct: 369 SRVRSRKGLKLLVLDEEEKVTNTTKNVVYREVFENI 476
>BP046665
Length = 524
Score = 32.0 bits (71), Expect = 0.026
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = -2
Query: 4 WIHLCYFSHGQLYVAISRVTSRGGLKILINDDDGDDTDVASSVIY 48
+I L +SH +S + SR GLK+L+ D++ T+ +V+Y
Sbjct: 202 YIFLAMYSHMVSCTLLSMLRSRKGLKLLVLDEEEKVTNTTKNVVY 68
>BP081760
Length = 355
Score = 27.3 bits (59), Expect = 0.63
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = -2
Query: 11 SHGQLYVAISRVTSRGGLKILINDDDGDDT 40
SHG ++ + S + L++L +D+DG+DT
Sbjct: 282 SHGAVWTSSSPPSGPLSLRMLFSDEDGEDT 193
>TC12046
Length = 965
Score = 26.2 bits (56), Expect = 1.4
Identities = 14/36 (38%), Positives = 20/36 (54%), Gaps = 6/36 (16%)
Frame = +2
Query: 19 ISRVTSRGGLKILINDDDGD------DTDVASSVIY 48
I ++ G KIL DD+GD D D+A++V Y
Sbjct: 251 IGQINDGEGPKILYEDDEGDKIIISTDNDLAAAVSY 358
>TC9013
Length = 766
Score = 25.4 bits (54), Expect = 2.4
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 30 ILINDDDGDDTDVASSVIYREVSRNV 55
ILI D D +++ S+V+Y EV R V
Sbjct: 627 ILICDGDDSNSNSTSNVVYTEVFRTV 704
>TC15803
Length = 518
Score = 24.6 bits (52), Expect = 4.1
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +2
Query: 4 WIHLCYFSHGQLYVAIS 20
WI C+F HG L++ S
Sbjct: 224 WIRQCWFLHGLLWIMFS 274
>AV778595
Length = 594
Score = 24.3 bits (51), Expect = 5.4
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -1
Query: 23 TSRGGLKILINDDDGDDTDVASSVI 47
+S +L DDD DD D ASS++
Sbjct: 153 SSNSCCSLLPPDDDDDDDDDASSIV 79
>AV770299
Length = 532
Score = 23.9 bits (50), Expect = 7.0
Identities = 9/17 (52%), Positives = 12/17 (69%)
Frame = +1
Query: 2 SVWIHLCYFSHGQLYVA 18
+V +HLC FSH L+ A
Sbjct: 283 NVHVHLCVFSHFYLFYA 333
>AV421913
Length = 430
Score = 23.5 bits (49), Expect = 9.1
Identities = 10/21 (47%), Positives = 12/21 (56%)
Frame = +3
Query: 1 MSVWIHLCYFSHGQLYVAISR 21
+ VW+ LC SHG VA R
Sbjct: 63 LQVWLSLCLVSHGGSGVARRR 125
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.322 0.138 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 989,479
Number of Sequences: 28460
Number of extensions: 8423
Number of successful extensions: 69
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of query: 55
length of database: 4,897,600
effective HSP length: 31
effective length of query: 24
effective length of database: 4,015,340
effective search space: 96368160
effective search space used: 96368160
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)
Medicago: description of AC122166.1