TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC122165.8 - phase: 1 /pseudo
         (144 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC16524 similar to GB|AAL69537.1|18491137|AY074839 AT5g45420/MFC...    30  0.16
TC8286 homologue to GB|AAD14482.1|4249385|T2K10 T2K10.11 {Arabid...    28  0.61
TC9535                                                                 28  0.80
TC15571 weakly similar to PIR|S19652|S19652 cellodextrinase C - ...    26  2.3
BP066191                                                               25  4.0
BP028625                                                               25  5.2
BP042574                                                               25  5.2
BP060005                                                               25  5.2
TC16807 similar to UP|Q9LPN1 (Q9LPN1) F2J10.2 protein, partial (...    25  5.2
TC11245 similar to UP|Q8KBE2 (Q8KBE2) Naphthoate synthase, parti...    25  6.8
TC14309 homologue to UP|H2B_GOSHI (O22582) Histone H2B, partial ...    24  8.8
BP064299                                                               24  8.8
AV429033                                                               24  8.8
TC15999 similar to UP|Q9LLT5 (Q9LLT5) Receptor-like protein kina...    24  8.8

>TC16524 similar to GB|AAL69537.1|18491137|AY074839 AT5g45420/MFC19_9
           {Arabidopsis thaliana;}, partial (41%)
          Length = 997

 Score = 30.0 bits (66), Expect = 0.16
 Identities = 18/51 (35%), Positives = 26/51 (50%)
 Frame = +1

Query: 81  SNRKQRFKQKLKEADKRISGTGRENKVDNLRELVGGEKTSVGMAKGSSPKD 131
           S+  ++F +K K ADKR  G   E KV+       GE  ++  A  + PKD
Sbjct: 538 SDSYEQFLKKRKAADKRGGGEEEEGKVEEETNWSNGEDIALLNALKAFPKD 690


>TC8286 homologue to GB|AAD14482.1|4249385|T2K10 T2K10.11 {Arabidopsis
           thaliana;}, partial (6%)
          Length = 671

 Score = 28.1 bits (61), Expect = 0.61
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 65  PHGAPPSQPKQQEVIPSNRK 84
           PH  PP+QP Q  V+PS ++
Sbjct: 146 PHLPPPTQPPQSHVLPSQQR 205


>TC9535 
          Length = 1083

 Score = 27.7 bits (60), Expect = 0.80
 Identities = 18/54 (33%), Positives = 24/54 (44%)
 Frame = -3

Query: 29  PSLGIQDSDQSKNNAASVESPNSAAKTKKEEKIYLGPHGAPPSQPKQQEVIPSN 82
           P+ GI +   SK  + SV   +S   TK     Y     +PPS P     +PSN
Sbjct: 520 PTTGIPEDMASKTTSPSVS--DSEGMTKTSPLAYA*DSSSPPSIPVNTAGMPSN 365


>TC15571 weakly similar to PIR|S19652|S19652 cellodextrinase C - Pseudomonas
           fluorescens {Pseudomonas fluorescens;} , partial (6%)
          Length = 784

 Score = 26.2 bits (56), Expect = 2.3
 Identities = 20/72 (27%), Positives = 28/72 (38%), Gaps = 9/72 (12%)
 Frame = -2

Query: 34  QDSDQSKNNAASV-----ESPNSAAKTKKEEKIYLGPH----GAPPSQPKQQEVIPSNRK 84
           QD D  +    S      E  +S+     EE   L  H    G P +QP +++ IP    
Sbjct: 756 QDDDDDEEETDSFDQGDEEETDSSLSHSDEEIALLDTHASAEGVPVAQPAEEQPIPPPPT 577

Query: 85  QRFKQKLKEADK 96
               Q L+E  K
Sbjct: 576 TSMSQLLQELQK 541


>BP066191 
          Length = 518

 Score = 25.4 bits (54), Expect = 4.0
 Identities = 12/32 (37%), Positives = 16/32 (49%)
 Frame = -3

Query: 65  PHGAPPSQPKQQEVIPSNRKQRFKQKLKEADK 96
           P   PP Q   Q +I  N +Q+  + LKE  K
Sbjct: 411 PFSKPPEQEFSQSIISKNNQQKPCKSLKEECK 316


>BP028625 
          Length = 566

 Score = 25.0 bits (53), Expect = 5.2
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -2

Query: 132 WLDPHCHEAEF 142
           WLDPHC+  EF
Sbjct: 142 WLDPHCNFLEF 110


>BP042574 
          Length = 505

 Score = 25.0 bits (53), Expect = 5.2
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 49 PNSAAKTKKEEKIYLGPHGAPPSQPKQQEVIPSN 82
          PN  A  ++ E ++  P    P +P+  E IPSN
Sbjct: 19 PNQRACFRRIESLHSLPPSHFPCKPRDPEPIPSN 120


>BP060005 
          Length = 339

 Score = 25.0 bits (53), Expect = 5.2
 Identities = 19/68 (27%), Positives = 27/68 (38%), Gaps = 8/68 (11%)
 Frame = +1

Query: 56  KKEEKIYLGPHGAPPSQPKQQ--------EVIPSNRKQRFKQKLKEADKRISGTGRENKV 107
           +  E + +  HGAPP+ P +          +  S RK + KQ          G    N +
Sbjct: 76  QSSELVIVSAHGAPPTHPNRTLYFGDNILHISSSGRKFKHKQ----------GGSNNN*L 225

Query: 108 DNLRELVG 115
             LR LVG
Sbjct: 226 SILRGLVG 249


>TC16807 similar to UP|Q9LPN1 (Q9LPN1) F2J10.2 protein, partial (13%)
          Length = 486

 Score = 25.0 bits (53), Expect = 5.2
 Identities = 14/62 (22%), Positives = 25/62 (39%)
 Frame = -3

Query: 29  PSLGIQDSDQSKNNAASVESPNSAAKTKKEEKIYLGPHGAPPSQPKQQEVIPSNRKQRFK 88
           P LG       +N +AS     + +   +   +       PP  P    ++ SNR+Q + 
Sbjct: 259 PGLGGASPGSDRNTSASSHHF*TLSSISRRRSLRAKLFPPPPPPPSVAAMLVSNRRQLYM 80

Query: 89  QK 90
           +K
Sbjct: 79  EK 74


>TC11245 similar to UP|Q8KBE2 (Q8KBE2) Naphthoate synthase, partial (23%)
          Length = 488

 Score = 24.6 bits (52), Expect = 6.8
 Identities = 24/100 (24%), Positives = 40/100 (40%)
 Frame = -2

Query: 8   FVLKCMFFGLLLVVDTDGFVIPSLGIQDSDQSKNNAASVESPNSAAKTKKEEKIYLGPHG 67
           F+++   FG   +V T    + SL  ++ D ++   + +    SA K        +GP G
Sbjct: 484 FIIRISIFGPQGLVTTTTKCLGSLPGENDDPNRGIVSCIIE--SADKLLNR----MGPKG 323

Query: 68  APPSQPKQQEVIPSNRKQRFKQKLKEADKRISGTGRENKV 107
            P   P    +  S       Q + E   R+ G+G  N V
Sbjct: 322 IPSLWPINSNLGYSFPNSLLVQNVSEVLARVIGSGTPNDV 203


>TC14309 homologue to UP|H2B_GOSHI (O22582) Histone H2B, partial (93%)
          Length = 682

 Score = 24.3 bits (51), Expect = 8.8
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
 Frame = +1

Query: 44  ASVESPNSAAKTKKEEKIYLGPHGAPPSQ--PKQQEVIPSNRKQRFKQKLKEADKR 97
           A+ E   +A K   EEK       APP++  PK  + +P         K K+  K+
Sbjct: 70  AAAEKKPAAEKKPAEEKKSTAAEKAPPAEKKPKAGKKLPKEGASAAGDKKKKRSKK 237


>BP064299 
          Length = 531

 Score = 24.3 bits (51), Expect = 8.8
 Identities = 14/62 (22%), Positives = 24/62 (38%)
 Frame = -3

Query: 29  PSLGIQDSDQSKNNAASVESPNSAAKTKKEEKIYLGPHGAPPSQPKQQEVIPSNRKQRFK 88
           P LG       +N +AS     +     +   +       PP  P    ++ SNR+Q + 
Sbjct: 304 PGLGGASPGSDRNTSASSHHF*TLRSISRRRSLRAKLFPPPPPPPSVAAMLVSNRRQLYM 125

Query: 89  QK 90
           +K
Sbjct: 124 EK 119


>AV429033 
          Length = 557

 Score = 24.3 bits (51), Expect = 8.8
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = +1

Query: 29  PSLGIQDSDQSKNNAASVESPNSAAKTKKEEKIYLGPHGAPPSQPK 74
           PSLG  +  +S+     + SP          +++  PHG PP  P+
Sbjct: 151 PSLGRHNRCRSRRRQRLLPSP---------PRLHRRPHGPPPPHPQ 261


>TC15999 similar to UP|Q9LLT5 (Q9LLT5) Receptor-like protein kinase
           (Fragment), complete
          Length = 999

 Score = 24.3 bits (51), Expect = 8.8
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +3

Query: 122 GMAKGSSPKDWLDPHC 137
           G   G  P+DWL  HC
Sbjct: 663 G*TNGRGPQDWLSVHC 710


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.320    0.137    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,405,100
Number of Sequences: 28460
Number of extensions: 24819
Number of successful extensions: 176
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of query: 144
length of database: 4,897,600
effective HSP length: 82
effective length of query: 62
effective length of database: 2,563,880
effective search space: 158960560
effective search space used: 158960560
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)