BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC122165.12 + phase: 1 /pseudo
(150 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC10414 similar to GB|AAP13363.1|30023660|BT006255 At5g55710 {Ar... 132 2e-32
TC18300 similar to GB|AAP13363.1|30023660|BT006255 At5g55710 {Ar... 106 1e-24
AV777955 33 0.016
BP057526 30 0.23
TC16589 similar to UP|MPA2_ARATH (O04308) Probable mitochondrial... 28 0.51
TC12864 weakly similar to UP|Q7XA66 (Q7XA66) At1g49590, partial ... 28 0.88
TC11154 weakly similar to UP|Q9LQ75 (Q9LQ75) T1N6.22 protein, pa... 25 5.7
TC10750 similar to UP|AAP80385 (AAP80385) ABC transporter, parti... 25 5.7
TC15702 weakly similar to UP|Q8LFU7 (Q8LFU7) Zinc finger protein... 25 5.7
TC20244 25 5.7
BP050568 25 7.4
TC17554 UP|CYB6_LOTJA (Q9BBQ6) Cytochrome b6, complete 25 7.4
AU251815 25 7.4
TC15111 similar to UP|RRS1_ARATH (Q9SH88) Ribosome biogenesis re... 25 7.4
TC12740 similar to UP|Q9J9L7 (Q9J9L7) Polyprotein (Fragment), pa... 25 7.4
TC19672 weakly similar to UP|Q8RW26 (Q8RW26) Plasma membrane H+-... 24 9.7
TC17548 24 9.7
TC16374 similar to UP|Q7LZA6 (Q7LZA6) Protamine II (Fragment), p... 24 9.7
TC8738 weakly similar to GB|AAO83390.1|37778684|AY188755 atypica... 24 9.7
TC8739 24 9.7
>TC10414 similar to GB|AAP13363.1|30023660|BT006255 At5g55710 {Arabidopsis
thaliana;}, partial (34%)
Length = 504
Score = 132 bits (333), Expect = 2e-32
Identities = 61/67 (91%), Positives = 64/67 (95%)
Frame = +2
Query: 1 ASDRLISALCYFYPFFDGIQYGKFVITQFYPIQAIVQPLIPAIRVFKSFPFNGFLVFLTL 60
A DRLISALCYFYPFFDGIQYGK+VITQFYP Q +VQPL+PAIRVFKSFPFNGFLVFLTL
Sbjct: 302 APDRLISALCYFYPFFDGIQYGKYVITQFYPFQVLVQPLVPAIRVFKSFPFNGFLVFLTL 481
Query: 61 YFFVVRN 67
YFFVVRN
Sbjct: 482 YFFVVRN 502
>TC18300 similar to GB|AAP13363.1|30023660|BT006255 At5g55710 {Arabidopsis
thaliana;}, partial (30%)
Length = 395
Score = 106 bits (265), Expect = 1e-24
Identities = 51/61 (83%), Positives = 56/61 (91%)
Frame = -3
Query: 90 FPDLLERGFNPRGGFGLDLLMSLDSTVFLFLLVCLIYGSSSCILGQLPRLPIVADAADRQ 149
FPDLLE+GFNP+ G GLDL+MSLDS VFLFLLV LIYGSS C+LGQ+PRLPIVADAADRQ
Sbjct: 393 FPDLLEKGFNPKDGLGLDLMMSLDSPVFLFLLVSLIYGSSFCLLGQIPRLPIVADAADRQ 214
Query: 150 V 150
V
Sbjct: 213 V 211
>AV777955
Length = 429
Score = 33.5 bits (75), Expect = 0.016
Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = -1
Query: 39 LIPAIRV-FKSFPFNGFLVFLTLYFFVVRNPNF 70
+IP+ R F+ FP GF+VFL + F+V N NF
Sbjct: 141 MIPSPRTRFRGFPLTGFVVFLIILIFLVFNCNF 43
>BP057526
Length = 428
Score = 29.6 bits (65), Expect = 0.23
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = +1
Query: 46 FKSFPFNGFLVFLTLYFFVV--RNPNFSKYV 74
FK + F+ +L F LYFF NP+F KY+
Sbjct: 307 FKFYNFSTYLNFTNLYFFFCFYPNPSFGKYI 399
>TC16589 similar to UP|MPA2_ARATH (O04308) Probable mitochondrial processing
peptidase alpha subunit 2, mitochondrial precursor
(Alpha-MPP 2) , partial (18%)
Length = 530
Score = 28.5 bits (62), Expect = 0.51
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Frame = +3
Query: 97 GFNPRGGFGLDLLMSLDSTVFL----FLLVCLIYGSSSCIL 133
G P+ FG DL +VF+ F+++CL+Y C+L
Sbjct: 369 GNKPQRNFGFDLRSHC*GSVFVPLFSFIMICLMYQVHGCML 491
>TC12864 weakly similar to UP|Q7XA66 (Q7XA66) At1g49590, partial (33%)
Length = 404
Score = 27.7 bits (60), Expect = 0.88
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -3
Query: 104 FGLDLLMSLDSTVFLFLLVCLIYGSSSCILGQL 136
F DLL L S + LFLL +++ SS LG +
Sbjct: 372 FSFDLLKGLSSFLMLFLLGSILFSHSSQPLGNI 274
>TC11154 weakly similar to UP|Q9LQ75 (Q9LQ75) T1N6.22 protein, partial
(68%)
Length = 833
Score = 25.0 bits (53), Expect = 5.7
Identities = 16/54 (29%), Positives = 25/54 (45%), Gaps = 15/54 (27%)
Frame = +3
Query: 45 VFKSFPFNGFLVFLTLYFF---------------VVRNPNFSKYVRFNTMQAIV 83
VFK + + V+LTL+FF ++ NPN + + TMQ +V
Sbjct: 39 VFKLWKHSRTQVYLTLWFFIN*MWLMLQVQHLWQILSNPNLGNLIFW*TMQELV 200
>TC10750 similar to UP|AAP80385 (AAP80385) ABC transporter, partial (38%)
Length = 807
Score = 25.0 bits (53), Expect = 5.7
Identities = 21/73 (28%), Positives = 37/73 (49%), Gaps = 11/73 (15%)
Frame = +1
Query: 50 PFNGFLVFL--TLYFFVVR-NPNFSKYVRF--------NTMQAIVLDVLLIFPDLLERGF 98
PF + FL T+ +F+VR +P FS YV F ++++++ + I P+ L
Sbjct: 460 PFLVLITFLSGTICYFMVRLHPGFSHYVFFVLCLYASVTVVESLMMAIASIVPNFLMGII 639
Query: 99 NPRGGFGLDLLMS 111
G G+ +L+S
Sbjct: 640 IGAGIQGIFMLVS 678
>TC15702 weakly similar to UP|Q8LFU7 (Q8LFU7) Zinc finger protein 3, partial
(17%)
Length = 620
Score = 25.0 bits (53), Expect = 5.7
Identities = 10/31 (32%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = -1
Query: 106 LDLLMSLDSTVFLF-LLVCLIYGSSSCILGQ 135
+ +L+ +D++ LF + +C+ + S C LGQ
Sbjct: 506 MQMLLVIDTSKHLFDIYICIYFQQSFCCLGQ 414
>TC20244
Length = 513
Score = 25.0 bits (53), Expect = 5.7
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = -2
Query: 103 GFGLDLLMSLDSTVFLFLLVCL--IYGSSSCIL 133
G+G S+ +FLF+L+CL Y SS IL
Sbjct: 410 GYGHRYFPSIAKWIFLFILICLSCSYFPSSTIL 312
>BP050568
Length = 566
Score = 24.6 bits (52), Expect = 7.4
Identities = 16/44 (36%), Positives = 22/44 (49%)
Frame = -3
Query: 32 IQAIVQPLIPAIRVFKSFPFNGFLVFLTLYFFVVRNPNFSKYVR 75
++ +V PA + SF FLVF YF + P FS Y+R
Sbjct: 204 LEEVVVERCPAY-FYSSFTSAPFLVF---YFILNLGPTFSVYIR 85
>TC17554 UP|CYB6_LOTJA (Q9BBQ6) Cytochrome b6, complete
Length = 740
Score = 24.6 bits (52), Expect = 7.4
Identities = 13/50 (26%), Positives = 23/50 (46%)
Frame = +1
Query: 22 GKFVITQFYPIQAIVQPLIPAIRVFKSFPFNGFLVFLTLYFFVVRNPNFS 71
G+ +T+FY + V PL+ A VF+ ++F ++R S
Sbjct: 526 GQSTLTRFYSLHTFVLPLLTA-------------VFMLMHFSMIRKQGIS 636
>AU251815
Length = 266
Score = 24.6 bits (52), Expect = 7.4
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +1
Query: 116 VFLFLLVCLIYGSSSCILG 134
VF FL+ CL++ CI+G
Sbjct: 169 VFFFLVFCLLFVLFQCIIG 225
>TC15111 similar to UP|RRS1_ARATH (Q9SH88) Ribosome biogenesis regulatory
protein homolog, partial (62%)
Length = 1280
Score = 24.6 bits (52), Expect = 7.4
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 12/71 (16%)
Frame = -2
Query: 4 RLISALCYFYPFFDGIQYGKFVITQFYPIQA-------IVQPLIPAIRVF-----KSFPF 51
R++S LC+ ++ F+I P+ A I+Q L+ + ++ KSFPF
Sbjct: 478 RIVSFLCF------NDRHSIFIIRTIIPVSAFPSSRLFIIQNLVFLLFLYAFLFGKSFPF 317
Query: 52 NGFLVFLTLYF 62
+ L F ++F
Sbjct: 316 SRRLWFWQMFF 284
>TC12740 similar to UP|Q9J9L7 (Q9J9L7) Polyprotein (Fragment), partial (9%)
Length = 547
Score = 24.6 bits (52), Expect = 7.4
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -1
Query: 45 VFKSFPFNGFLVFLTLYF 62
+F FPF LVF+T++F
Sbjct: 325 IFFLFPFRPLLVFITIHF 272
>TC19672 weakly similar to UP|Q8RW26 (Q8RW26) Plasma membrane H+-ATPase ,
partial (5%)
Length = 597
Score = 24.3 bits (51), Expect = 9.7
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +3
Query: 100 PRGGFGLDLLMSLDSTVFLF 119
PRGG G +L SL + FLF
Sbjct: 330 PRGGLGFLMLFSLFAPPFLF 389
>TC17548
Length = 502
Score = 24.3 bits (51), Expect = 9.7
Identities = 14/37 (37%), Positives = 19/37 (50%), Gaps = 5/37 (13%)
Frame = -1
Query: 106 LDLLMSLDSTV-----FLFLLVCLIYGSSSCILGQLP 137
L L SL+ST + L++C S SCI+ Q P
Sbjct: 178 LSFLQSLNSTYPNEIGHIILIICKAIKSKSCIMLQRP 68
>TC16374 similar to UP|Q7LZA6 (Q7LZA6) Protamine II (Fragment), partial
(63%)
Length = 1130
Score = 24.3 bits (51), Expect = 9.7
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = -3
Query: 46 FKSFPFNGFLVFLTLYFFVVRNPNFSKYVRFNTM 79
F SFP + + L Y + +F +Y+RF ++
Sbjct: 729 FSSFPISSYSASLLWYSSSSSSAHFPQYLRFGSL 628
>TC8738 weakly similar to GB|AAO83390.1|37778684|AY188755 atypical
receptor-like kinase MARK {Zea mays;} , partial (16%)
Length = 679
Score = 24.3 bits (51), Expect = 9.7
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = -1
Query: 103 GFGLDLLMSLDSTVFLF 119
GFGLDLL SL LF
Sbjct: 349 GFGLDLLSSLTCAALLF 299
>TC8739
Length = 669
Score = 24.3 bits (51), Expect = 9.7
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = -2
Query: 103 GFGLDLLMSLDSTVFLF 119
GFGLDLL SL LF
Sbjct: 296 GFGLDLLSSLTCAALLF 246
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.335 0.153 0.470
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,767,660
Number of Sequences: 28460
Number of extensions: 39103
Number of successful extensions: 426
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 426
length of query: 150
length of database: 4,897,600
effective HSP length: 82
effective length of query: 68
effective length of database: 2,563,880
effective search space: 174343840
effective search space used: 174343840
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 51 (24.3 bits)
Medicago: description of AC122165.12