TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC122163.4 - phase: 0 
         (431 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC10943 similar to GB|AAM98095.1|22655008|AY139777 AT3g20300/MQC...   279  6e-76
TC19205                                                                45  2e-05
TC18166                                                                33  0.091
TC19184 weakly similar to UP|Q9FXH4 (Q9FXH4) F6F9.19 protein, pa...    29  1.7
TC17255                                                                28  3.8
TC15554 similar to GB|AAO24533.1|27808506|BT003101 At2g41420 {Ar...    27  6.5
TC14321 similar to UP|AAQ72789 (AAQ72789) 60S ribosomal protein ...    27  8.5

>TC10943 similar to GB|AAM98095.1|22655008|AY139777 AT3g20300/MQC12_5
           {Arabidopsis thaliana;}, partial (5%)
          Length = 710

 Score =  279 bits (714), Expect = 6e-76
 Identities = 135/187 (72%), Positives = 153/187 (81%), Gaps = 2/187 (1%)
 Frame = +2

Query: 1   MEEEREVSFLAMNKENSGIY--HDGKELRRFRAYLRWVYVDQSNLCKAGISWSVFFTLAY 58
           ME++R +  L +NKE +  Y  +D  ELR+ R+Y+RWVYVDQSN+CK   + SVFFTLA+
Sbjct: 152 MEDDRGI-LLQVNKEENASYLLNDEAELRKIRSYIRWVYVDQSNVCKTVFTCSVFFTLAF 328

Query: 59  VVPILSHFLLDCSTTCDADHRRPYHVPVQISLSVFATLSFISLSKWDRKYGFSKFLFLDK 118
           VVPILSHFLL C +TCD DH RPYH+PVQISL+VFATLSFISLS WDRKYG SKFLFLDK
Sbjct: 329 VVPILSHFLLYCPSTCDPDHSRPYHIPVQISLTVFATLSFISLSSWDRKYGLSKFLFLDK 508

Query: 119 VSDESLKIQRGYAIQMKRTMKLILLWGLPCFICQCVYKIWWYISGASQIPYYGEVYVSGI 178
           V DESL+IQRGYA QMK TM LIL WGLPCFI +C YKIWWY SG SQIPYYGE+Y S I
Sbjct: 509 VGDESLRIQRGYAQQMKGTMNLILRWGLPCFIAECAYKIWWYASGTSQIPYYGEIYASSI 688

Query: 179 ILCTLEL 185
           IL TLEL
Sbjct: 689 ILGTLEL 709


>TC19205 
          Length = 523

 Score = 45.1 bits (105), Expect = 2e-05
 Identities = 20/21 (95%), Positives = 20/21 (95%)
 Frame = +1

Query: 411 HSIFGIQLALCLWLLNKTVGI 431
           HSIF IQLALCLWLLNKTVGI
Sbjct: 1   HSIFAIQLALCLWLLNKTVGI 63


>TC18166 
          Length = 530

 Score = 33.1 bits (74), Expect = 0.091
 Identities = 18/46 (39%), Positives = 28/46 (60%)
 Frame = -1

Query: 223 ETEVGTILLEHLRIRRNLRVISHRFRAFILSSLLLVTASQLIFLLM 268
           ET + T+L++HLRI++    + H FR   L  LLL+   Q++ L M
Sbjct: 347 ETNLLTLLIKHLRIKKMKENM*HLFRTPSLHGLLLIWLKQMVGLDM 210


>TC19184 weakly similar to UP|Q9FXH4 (Q9FXH4) F6F9.19 protein, partial (19%)
          Length = 627

 Score = 28.9 bits (63), Expect = 1.7
 Identities = 17/50 (34%), Positives = 27/50 (54%)
 Frame = -1

Query: 313 TGLASKWHICATINSFDNIDGETPTALIASAQAMAADISWGSSEDESGDE 362
           T +  KW  C T    D+I G+T    ++S+ A  + IS  S+ D +GD+
Sbjct: 369 TNI*HKWQRCQTRKRCDSIKGKT*LLQVSSSSAAPSSIS--SAIDLAGDQ 226


>TC17255 
          Length = 485

 Score = 27.7 bits (60), Expect = 3.8
 Identities = 16/68 (23%), Positives = 32/68 (46%), Gaps = 3/68 (4%)
 Frame = +2

Query: 138 MKLILLWGLPC---FICQCVYKIWWYISGASQIPYYGEVYVSGIILCTLELCSWFYRTSI 194
           +K+ ++W L     F C   + +  Y+S    + ++G V +   +   L L   F+   I
Sbjct: 254 LKVKIVW*LSH*VPFCCNVRWHVITYLSWFVLVFFFGIV*IFSCVFSFLNLSIAFFGIDI 433

Query: 195 FFLVCVLF 202
            F +C++F
Sbjct: 434 IFHICIVF 457


>TC15554 similar to GB|AAO24533.1|27808506|BT003101 At2g41420 {Arabidopsis
           thaliana;}, partial (77%)
          Length = 679

 Score = 26.9 bits (58), Expect = 6.5
 Identities = 20/85 (23%), Positives = 34/85 (39%), Gaps = 4/85 (4%)
 Frame = -2

Query: 141 ILLWGLPCFICQCVYKIWWYISGASQIPYYGEVYVSGIILCTLELCSWFYRTSIFFLVCV 200
           I LW +PC+        WW +S    IP +                +W+    +  +V  
Sbjct: 216 IPLWRVPCWRIPLCRVPWWRVSVLRWIPLW------------RRNTNWWL---LLMIVVA 82

Query: 201 LFRLIGYLQ----IQRLDEFAPVFQ 221
              L+GYL+    +Q+L  F  +F+
Sbjct: 81  HVNLLGYLKCCAFVQKLQRFRKLFE 7


>TC14321 similar to UP|AAQ72789 (AAQ72789) 60S ribosomal protein L5, partial
           (98%)
          Length = 1185

 Score = 26.6 bits (57), Expect = 8.5
 Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 5/98 (5%)
 Frame = +1

Query: 208 LQIQRLDEFAPVFQRETEVGTILLEHLRIRRNLRVISHRFRAFILSSLLLVTASQLIFLL 267
           LQ+  LD + PV           L+HL+  RN+R +       I  +LL      ++ L+
Sbjct: 325 LQLIALDSYWPVES---------LKHLKWMRNMRAMLRLLERTIQWNLLRPGGHSVLSLM 477

Query: 268 MVI-KPH-ADVDILKGGELGLV---SITLVSGLYILLR 300
           +V+ +P  A V  +   EL +V    +T+  GL +L+R
Sbjct: 478 LVLSRPQLATVSSVPLREL*MVVWIFLTVTRGLLVLIR 591


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.327    0.140    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,488,219
Number of Sequences: 28460
Number of extensions: 133872
Number of successful extensions: 1091
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1082
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1091
length of query: 431
length of database: 4,897,600
effective HSP length: 93
effective length of query: 338
effective length of database: 2,250,820
effective search space: 760777160
effective search space used: 760777160
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 57 (26.6 bits)