BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC122162.11 - phase: 0
(208 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP069765 50 4e-07
TC8609 28 1.2
TC10484 similar to UP|Q850H7 (Q850H7) Gag-pol polyprotein (Fragm... 27 2.0
CB826675 27 2.6
NP645867 proliferating floral organs protein [Lotus japonicus] 27 3.3
TC8361 homologue to UP|Q9ST36 (Q9ST36) JPR ORF1 protein, partial... 27 3.3
BP071847 26 4.4
TC9009 similar to PIR|T06773|T06773 ferredoxin-NADP reductase -... 26 5.7
TC18462 weakly similar to UP|Q945M3 (Q945M3) At1g23890/T23E23_13... 25 7.5
TC15497 similar to UP|Q41695 (Q41695) Pectinacetylesterase precu... 25 9.7
TC14855 similar to UP|Q8RVX2 (Q8RVX2) Protease inhibitor precurs... 25 9.7
>BP069765
Length = 417
Score = 49.7 bits (117), Expect = 4e-07
Identities = 22/42 (52%), Positives = 30/42 (71%)
Frame = -2
Query: 130 KKWVKLRHFGDRIFFIGRGCSFSASASDLCIPKGNCVVFIDE 171
+ WV +R+ DR+ FIG C+FS SASDL + +GN VVF D+
Sbjct: 416 ESWVHVRNVRDRVLFIGDDCAFSVSASDLGVDEGNYVVFRDD 291
>TC8609
Length = 980
Score = 28.1 bits (61), Expect = 1.2
Identities = 23/82 (28%), Positives = 36/82 (43%)
Frame = +3
Query: 65 DSSVELAAQPLDPGIPGLNKMLVESEGRLLLLAINEMFYSFSIDFFKLDEKEKKWVRLMD 124
D V +A G+ GL + S G +LLL + DF+ D ++K++ +L
Sbjct: 258 DIKVLIAGAIALKGVGGLLFIFGSSFGAVLLLLHQLIATPIRYDFYNFDNEDKEFAQLF- 434
Query: 125 FDEKEKKWVKLRHFGDRIFFIG 146
K + FG +FFIG
Sbjct: 435 ----IKFTQNMALFGALLFFIG 488
>TC10484 similar to UP|Q850H7 (Q850H7) Gag-pol polyprotein (Fragment),
partial (20%)
Length = 479
Score = 27.3 bits (59), Expect = 2.0
Identities = 12/32 (37%), Positives = 16/32 (49%)
Frame = +3
Query: 174 LWIDNKRVFHLDQNQLSCGAKYLNLFLPPKWI 205
LW DN+ H+ N S K LN+ +WI
Sbjct: 57 LWCDNQAALHISSNPSSLSMKELNIL---RWI 143
>CB826675
Length = 551
Score = 26.9 bits (58), Expect = 2.6
Identities = 12/28 (42%), Positives = 14/28 (49%)
Frame = +1
Query: 144 FIGRGCSFSASASDLCIPKGNCVVFIDE 171
FIG G A L K C++FIDE
Sbjct: 358 FIGDGAKLVRDAFQLAKEKSPCIIFIDE 441
>NP645867 proliferating floral organs protein [Lotus japonicus]
Length = 1350
Score = 26.6 bits (57), Expect = 3.3
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = -3
Query: 182 FHLDQNQLSCGAKYLNLFLPPKWIH 206
FHL Q C A + +PP W H
Sbjct: 1117 FHLQSQQTECKAAAASSQIPPTWSH 1043
>TC8361 homologue to UP|Q9ST36 (Q9ST36) JPR ORF1 protein, partial (92%)
Length = 1523
Score = 26.6 bits (57), Expect = 3.3
Identities = 23/106 (21%), Positives = 48/106 (44%), Gaps = 6/106 (5%)
Frame = +3
Query: 3 HGKNPLLLGRLSHRFNRRIIFRGLDEQW-----KLISKRSYEYGDICLFKGRIYA-VNQS 56
H NP ++G N ++ R DE W K +S + + ++ R+ A N S
Sbjct: 240 HMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVIAKTVSLDAAKVINVTPRYARLRAGANGS 419
Query: 57 GETVTVGPDSSVELAAQPLDPGIPGLNKMLVESEGRLLLLAINEMF 102
+ +G ++ ++ +PL+ + ++ E R+L+ +I E +
Sbjct: 420 AKGEIIGWENIELISDRPLETMLKEFKQLKEEYPDRILIASIMEEY 557
>BP071847
Length = 433
Score = 26.2 bits (56), Expect = 4.4
Identities = 13/24 (54%), Positives = 17/24 (70%), Gaps = 4/24 (16%)
Frame = -2
Query: 88 ESEGRL----LLLAINEMFYSFSI 107
ES+GRL LL + N +FYSFS+
Sbjct: 282 ESKGRLWLVILLFSFNHLFYSFSL 211
>TC9009 similar to PIR|T06773|T06773 ferredoxin-NADP reductase - garden
pea (fragment) {Pisum sativum;} ,
partial (33%)
Length = 585
Score = 25.8 bits (55), Expect = 5.7
Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Frame = -3
Query: 43 ICLFKGRIYAV-NQSGETVTVGP 64
+C FKG A N +GETVT+GP
Sbjct: 439 LCKFKGGSGASSNSNGETVTLGP 371
>TC18462 weakly similar to UP|Q945M3 (Q945M3) At1g23890/T23E23_13, partial
(26%)
Length = 755
Score = 25.4 bits (54), Expect = 7.5
Identities = 15/40 (37%), Positives = 22/40 (54%)
Frame = -2
Query: 120 VRLMDFDEKEKKWVKLRHFGDRIFFIGRGCSFSASASDLC 159
V + D +EKE++W K + R I CS ++S SD C
Sbjct: 121 VNISDVEEKEEEW-KHKESRRRR*RISHLCSNASSKSDYC 5
>TC15497 similar to UP|Q41695 (Q41695) Pectinacetylesterase precursor ,
partial (55%)
Length = 799
Score = 25.0 bits (53), Expect = 9.7
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -1
Query: 119 WVRLMDFDEKEKKWVKLRHF 138
W++L+ EK +K LRHF
Sbjct: 463 WIKLLPITEKPRKGKGLRHF 404
>TC14855 similar to UP|Q8RVX2 (Q8RVX2) Protease inhibitor precursor, partial
(90%)
Length = 1001
Score = 25.0 bits (53), Expect = 9.7
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = -3
Query: 118 KWVRLMDFDEKEKKWVKLRHFGDRIFFI 145
KW+ + D KE++W L+H + F+
Sbjct: 111 KWLSVED*KRKEEQWKDLKHGSCNLHFL 28
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.325 0.144 0.457
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,484,076
Number of Sequences: 28460
Number of extensions: 65914
Number of successful extensions: 342
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 342
length of query: 208
length of database: 4,897,600
effective HSP length: 86
effective length of query: 122
effective length of database: 2,450,040
effective search space: 298904880
effective search space used: 298904880
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (25.0 bits)
Medicago: description of AC122162.11