BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC122162.1 + phase: 0 /pseudo/partial
(517 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC11187 weakly similar to UP|O80918 (O80918) At2g38330 protein, ... 279 7e-76
TC14887 similar to GB|AAP21178.1|30102520|BT006370 At3g08040/T8G... 267 4e-72
AW428809 266 5e-72
TC19169 similar to GB|AAP21178.1|30102520|BT006370 At3g08040/T8G... 171 3e-43
BP069526 112 1e-25
TC16264 similar to GB|AAP21178.1|30102520|BT006370 At3g08040/T8G... 86 1e-17
BP034698 34 0.050
AV406990 33 0.15
AV776569 30 1.2
TC16028 29 1.6
TC19977 similar to UP|Q9LVD9 (Q9LVD9) Gb|AAC28507.1, partial (20%) 29 2.1
AV424489 28 2.8
TC14406 similar to GB|AAM61587.1|21537246|AY085029 aluminum-indu... 28 3.6
TC14127 similar to UP|Q84UB0 (Q84UB0) Transcription factor Myb1,... 27 6.2
TC9673 UP|BAA31218 (BAA31218) Histone H3, complete 27 6.2
TC14126 similar to UP|Q84UB0 (Q84UB0) Transcription factor Myb1,... 27 8.1
>TC11187 weakly similar to UP|O80918 (O80918) At2g38330 protein, partial
(29%)
Length = 1104
Score = 279 bits (714), Expect = 7e-76
Identities = 146/340 (42%), Positives = 221/340 (64%)
Frame = +1
Query: 176 KKRHIASASTALLFGTVLGLIQAATLIFAAKPLLGAMGLKYDSPMLVPAVKYLRLRALGA 235
+++ ++S STALL LG+ ++ L + L +G+ +P V A K+L LRA+GA
Sbjct: 1 ERKQLSSVSTALLLALGLGIFESLALYLGSGTFLHIIGVSAANPTRVLAQKFLSLRAVGA 180
Query: 236 PAVLLSLAMQGIFRGFKDTTTPLYVIVSGYALNVAMDPLLIFYFKLGIRGAAISHVLSQY 295
PAV+LSLA+QGIFRGFKDT TP+ + G V + PLL++YF+LG+ GAAIS VLSQY
Sbjct: 181 PAVVLSLALQGIFRGFKDTKTPVLCLGIGNLSAVFLLPLLMYYFQLGVTGAAISTVLSQY 360
Query: 296 IMATLLLFILMKKVDLLPPSMKDLQIFRFLKNGGLLLARVIAVTFCVTLSASLAARLGPI 355
I A L+++ L + LLPP + LQ ++K+GG L R +AV +TL S+AAR GP+
Sbjct: 361 IGALLMIWNLNNRAVLLPPKLGSLQFGSYIKSGGFLXGRTLAVLTTMTLGTSMAARHGPV 540
Query: 356 PMAAFQTCLQVWMTSSLLADGLAVAIQAILACSFAEKDYNKVTTAATRTLQMSFVLGVGL 415
MAA Q C+QVW+ SLL D LA + QA++A S + +Y V L++ + G+ L
Sbjct: 541 AMAAHQICMQVWLAVSLLTDALAASGQALVASSLSRHEYKAVKELTNFVLKIGLLTGICL 720
Query: 416 SLVVGGGLYFGAGVFSKNVAVIHLIRLGLPFVAATQPINSLAFVFDGVNYGASDFAYSAY 475
+ ++G AGVF++++ V+ + R G+ FV+A+QP N+LA++FDG+++G SDF Y+A+
Sbjct: 721 TAILGVSXGSLAGVFTQDLKVLQVARTGVLFVSASQPFNALAYIFDGLHFGVSDFRYAAF 900
Query: 476 SLVMVSIASVTSLFFLYKSKGFIGIWIALTIYMSLRMFAG 515
S++ V S L F G G+W+ L+++M+LR+ AG
Sbjct: 901 SMMFVGAVSSAFLVFSPSRFGLHGVWLGLSLFMALRVVAG 1020
>TC14887 similar to GB|AAP21178.1|30102520|BT006370 At3g08040/T8G24.8
{Arabidopsis thaliana;}, partial (33%)
Length = 837
Score = 267 bits (682), Expect = 4e-72
Identities = 134/173 (77%), Positives = 156/173 (89%)
Frame = +2
Query: 345 SASLAARLGPIPMAAFQTCLQVWMTSSLLADGLAVAIQAILACSFAEKDYNKVTTAATRT 404
+ASLA+RLG I MAAFQTCLQVW+TSSLL+DGLA+A+QAILA SFAEKDY+KV A TRT
Sbjct: 2 AASLASRLGSIQMAAFQTCLQVWLTSSLLSDGLAIAVQAILASSFAEKDYDKVVAATTRT 181
Query: 405 LQMSFVLGVGLSLVVGGGLYFGAGVFSKNVAVIHLIRLGLPFVAATQPINSLAFVFDGVN 464
LQM+ VLG+GLSLV G LYFGAG+FS++ V+HLIR+ +PFVAATQPIN+LAFVFDGVN
Sbjct: 182 LQMTLVLGLGLSLV-GSCLYFGAGMFSESAPVVHLIRIAVPFVAATQPINALAFVFDGVN 358
Query: 465 YGASDFAYSAYSLVMVSIASVTSLFFLYKSKGFIGIWIALTIYMSLRMFAGVW 517
YGASDFAYSAYS+VMVS A++ SLF LYKS GFIGIWIALTIYM+LRMFAG++
Sbjct: 359 YGASDFAYSAYSMVMVSFATIASLFLLYKSNGFIGIWIALTIYMTLRMFAGLF 517
>AW428809
Length = 476
Score = 266 bits (681), Expect = 5e-72
Identities = 138/154 (89%), Positives = 145/154 (93%)
Frame = +1
Query: 232 ALGAPAVLLSLAMQGIFRGFKDTTTPLYVIVSGYALNVAMDPLLIFYFKLGIRGAAISHV 291
+LGAPAVLLSLAMQGIFRGFKDTTTPLYVIVSGYALNVAMDP+LIF LGIRGAAISHV
Sbjct: 13 SLGAPAVLLSLAMQGIFRGFKDTTTPLYVIVSGYALNVAMDPILIFRCNLGIRGAAISHV 192
Query: 292 LSQYIMATLLLFILMKKVDLLPPSMKDLQIFRFLKNGGLLLARVIAVTFCVTLSASLAAR 351
LSQY+MA L ILMKKVDL+PPSMKDLQIFRFL+NGGLLLARVIAVTFCVTLSASLAAR
Sbjct: 193 LSQYVMAFALFVILMKKVDLVPPSMKDLQIFRFLRNGGLLLARVIAVTFCVTLSASLAAR 372
Query: 352 LGPIPMAAFQTCLQVWMTSSLLADGLAVAIQAIL 385
LG PMAAFQTCLQVWMTSSLLADG+AVA+QAIL
Sbjct: 373 LGATPMAAFQTCLQVWMTSSLLADGIAVAVQAIL 474
>TC19169 similar to GB|AAP21178.1|30102520|BT006370 At3g08040/T8G24.8
{Arabidopsis thaliana;}, partial (17%)
Length = 561
Score = 171 bits (433), Expect = 3e-43
Identities = 107/176 (60%), Positives = 131/176 (73%), Gaps = 6/176 (3%)
Frame = +1
Query: 20 ECSLVFKMDSLAKEILGIAFPSALAVAADPIASLIDTAFIGHLGPVELAAAGVSIAVFNQ 79
+ LVFK DSLAKEILGIAFPSALA+AADPIASLI+TA IGHLGPV+LAAAGV++A+FNQ
Sbjct: 46 DARLVFKFDSLAKEILGIAFPSALAIAADPIASLIETACIGHLGPVQLAAAGVAMALFNQ 225
Query: 80 ASRITIFPLVSITTSFVAEEDTMDRINTKAAEKQFNESGKAKSNEVMPDDHLLQDIEAGA 139
AS++TIFPLVSITTSFVAEEDT+++ NT A EK+ ++ KS +V L QDIE A
Sbjct: 226 ASKVTIFPLVSITTSFVAEEDTLEKNNTTAMEKKPIDNIMDKSKDVA----LPQDIEEYA 393
Query: 140 TKQDSTLKNGDDANS--NISKSS-IVTNS---SNKSESKPIRKKRHIASASTALLF 189
+++ + A S I KS+ TN+ +N S S RKKRHI+SASTALLF
Sbjct: 394 SEEKNETPTQVLAASVELIEKSTEHETNNGDGTNTSNSNSGRKKRHISSASTALLF 561
>BP069526
Length = 496
Score = 112 bits (281), Expect = 1e-25
Identities = 52/61 (85%), Positives = 59/61 (96%)
Frame = -3
Query: 457 AFVFDGVNYGASDFAYSAYSLVMVSIASVTSLFFLYKSKGFIGIWIALTIYMSLRMFAGV 516
AFVFDGVNYGASDFAYSAYSLV+VS+ASV ++F LY+S+GFIGIWIALTIYMSLRMFAG+
Sbjct: 494 AFVFDGVNYGASDFAYSAYSLVIVSLASVATIFLLYRSEGFIGIWIALTIYMSLRMFAGI 315
Query: 517 W 517
W
Sbjct: 314 W 312
>TC16264 similar to GB|AAP21178.1|30102520|BT006370 At3g08040/T8G24.8
{Arabidopsis thaliana;}, partial (8%)
Length = 519
Score = 85.9 bits (211), Expect = 1e-17
Identities = 39/51 (76%), Positives = 47/51 (91%)
Frame = +3
Query: 467 ASDFAYSAYSLVMVSIASVTSLFFLYKSKGFIGIWIALTIYMSLRMFAGVW 517
+SDFAYSAYSLV+VS+AS ++ LY+S+GFIGIWIALTIYMSLRMFAG+W
Sbjct: 3 SSDFAYSAYSLVIVSLASAATISLLYRSEGFIGIWIALTIYMSLRMFAGIW 155
>BP034698
Length = 478
Score = 34.3 bits (77), Expect = 0.050
Identities = 24/63 (38%), Positives = 32/63 (50%)
Frame = +2
Query: 32 KEILGIAFPSALAVAADPIASLIDTAFIGHLGPVELAAAGVSIAVFNQASRITIFPLVSI 91
KEI+ P A P+ SLIDTA +G VELAA G + + S +F +S+
Sbjct: 95 KEIVKFTGPVAGIWLCGPLMSLIDTAVVGQGSSVELAALGPATVFCDYLSYTFMF--LSV 268
Query: 92 TTS 94
TS
Sbjct: 269 ATS 277
>AV406990
Length = 392
Score = 32.7 bits (73), Expect = 0.15
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -2
Query: 349 AARLGPIPMAAFQTCLQVWMTSSLLADGLAVAIQAILACSFAEKD 393
AA GP+P+ T W +S + AVA +AC FA K+
Sbjct: 376 AAGTGPLPLVNRTTSAAAWAAASAASATAAVAAATAMACLFASKE 242
>AV776569
Length = 633
Score = 29.6 bits (65), Expect = 1.2
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = +2
Query: 22 SLVFKMDSLAKEILGIAFPSALAVAADPIASLIDTAFIGHLGPVELAAAGV 72
SLV + +K++ IA P+ L + F+GH+G ++LAA V
Sbjct: 38 SLVRRFGIESKKLWKIAGPAILTMLCQYSLGAFTLTFVGHVGELDLAAVSV 190
>TC16028
Length = 593
Score = 29.3 bits (64), Expect = 1.6
Identities = 13/59 (22%), Positives = 30/59 (50%)
Frame = +1
Query: 127 PDDHLLQDIEAGATKQDSTLKNGDDANSNISKSSIVTNSSNKSESKPIRKKRHIASAST 185
P+D L++ + + TLKNG DA+ + + + ++ + PI ++ +++ T
Sbjct: 250 PEDQLIKTNQQNILIRSLTLKNGSDASKKRTAEKALDSRASAKRTTPINTRQEGSNSQT 426
>TC19977 similar to UP|Q9LVD9 (Q9LVD9) Gb|AAC28507.1, partial (20%)
Length = 452
Score = 28.9 bits (63), Expect = 2.1
Identities = 14/41 (34%), Positives = 23/41 (55%)
Frame = +3
Query: 32 KEILGIAFPSALAVAADPIASLIDTAFIGHLGPVELAAAGV 72
K + +A P+ + + + S+ F GHLG +ELAAA +
Sbjct: 228 KLLFYLAVPAVIVYLINYVMSMSTQIFSGHLGNLELAAASL 350
>AV424489
Length = 279
Score = 28.5 bits (62), Expect = 2.8
Identities = 15/36 (41%), Positives = 22/36 (60%)
Frame = +3
Query: 334 RVIAVTFCVTLSASLAARLGPIPMAAFQTCLQVWMT 369
RV A+ F + +AS A RL P P AA +C +W++
Sbjct: 9 RVDALQF--SFAASAAVRLQPTPSAAVLSCRSLWVS 110
>TC14406 similar to GB|AAM61587.1|21537246|AY085029 aluminum-induced
protein-like {Arabidopsis thaliana;}, partial (66%)
Length = 806
Score = 28.1 bits (61), Expect = 3.6
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 6/38 (15%)
Frame = +1
Query: 340 FCVTLSASLAARLGPIPMA------AFQTCLQVWMTSS 371
F + S+S A L P P+ +FQ CL++WMTSS
Sbjct: 193 FTLVPSSSTLALLVPWPILFTNRTLSFQGCLRLWMTSS 306
>TC14127 similar to UP|Q84UB0 (Q84UB0) Transcription factor Myb1, partial
(21%)
Length = 556
Score = 27.3 bits (59), Expect = 6.2
Identities = 15/42 (35%), Positives = 22/42 (51%)
Frame = -1
Query: 396 KVTTAATRTLQMSFVLGVGLSLVVGGGLYFGAGVFSKNVAVI 437
++ + L ++ + G G S VVGGG+ G VF V VI
Sbjct: 370 EIINQTSLALAVALLTGAGRSGVVGGGVIGGDNVFVVAVVVI 245
>TC9673 UP|BAA31218 (BAA31218) Histone H3, complete
Length = 690
Score = 27.3 bits (59), Expect = 6.2
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = -2
Query: 45 VAADPIASLIDTAFIGHLGPVELAAAGVSIAVFNQASRITIFPL 88
V AD +A+L+ + F+G PV+L A + A+ RI I L
Sbjct: 170 VGADFLAALVASCFLGAFPPVDLRAVCLVRAMSLHGRRIEIIRL 39
>TC14126 similar to UP|Q84UB0 (Q84UB0) Transcription factor Myb1, partial
(44%)
Length = 1500
Score = 26.9 bits (58), Expect = 8.1
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = -3
Query: 405 LQMSFVLGVGLSLVVGGGLYFGAGVFSKNVAVI 437
L ++ + G G S VVGGG+ G VF V VI
Sbjct: 352 LAVALLTGAGRSGVVGGGVIGGDNVFVVAVVVI 254
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.327 0.139 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,005,799
Number of Sequences: 28460
Number of extensions: 84335
Number of successful extensions: 565
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 563
length of query: 517
length of database: 4,897,600
effective HSP length: 94
effective length of query: 423
effective length of database: 2,222,360
effective search space: 940058280
effective search space used: 940058280
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 57 (26.6 bits)
Medicago: description of AC122162.1