BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC121245.8 - phase: 0
(665 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC10750 similar to UP|AAP80385 (AAP80385) ABC transporter, parti... 290 5e-79
AV416268 243 5e-65
TC17528 similar to GB|AAP37786.1|30725528|BT008427 At1g51560 {Ar... 161 3e-40
TC11086 108 3e-24
AW720269 105 3e-23
AV771159 85 4e-23
BP055095 92 3e-19
TC18647 similar to UP|Q9ASR9 (Q9ASR9) At2g01320/F10A8.20, partia... 84 1e-16
TC14510 similar to UP|Q9LMU4 (Q9LMU4) F2H15.7 protein, partial (... 68 4e-12
BP057421 67 1e-11
BP029778 61 7e-10
AV406931 55 5e-08
BG662257 49 2e-06
TC15722 similar to UP|Q9FMU0 (Q9FMU0) Similarity to ABC transpor... 48 6e-06
BP055390 47 1e-05
TC11425 similar to UP|Q9M1Q9 (Q9M1Q9) P-glycoprotein-like proeti... 45 4e-05
CB827630 45 5e-05
TC18135 homologue to UP|Q9MAY4 (Q9MAY4) ABC transporter homolog,... 44 8e-05
TC18902 weakly similar to GB|AAP37786.1|30725528|BT008427 At1g51... 40 0.001
AV407220 40 0.001
>TC10750 similar to UP|AAP80385 (AAP80385) ABC transporter, partial (38%)
Length = 807
Score = 290 bits (742), Expect = 5e-79
Identities = 140/270 (51%), Positives = 188/270 (68%)
Frame = +1
Query: 307 ISIEQAIDILVSSYSSSERNQEIKNEVSVLSIVLSLKDNNSTYKKKHAGFLNQCLVLTRR 366
I+ +AI L+ Y +S+++ + +V +S K A FL Q LT+R
Sbjct: 4 ITTAEAIRTLIDFYRTSQQSYAARQKVDEIS---QFKGTVLEAGGSEASFLMQSYTLTKR 174
Query: 367 SFVNMFRDLGYYWLRLGIYIALAISLATVFNDLDKSNGSIQDRGSLLMFVFSFLTFMTIG 426
SF+NM RD GYYWLRL IYI + I + T++ ++ SI RGS FVF F+TFM+IG
Sbjct: 175 SFINMSRDFGYYWLRLVIYIVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIG 354
Query: 427 GFPSYVEDMKVFERERLNGHYGVTAYVIGNTLSAIPYLLMISLIPGAIAYYPPGLQKGFE 486
GFPS+VEDMKVF+RERLNGHYGVTA+V+ NT+SA P+L++I+ + G I Y+ L GF
Sbjct: 355 GFPSFVEDMKVFQRERLNGHYGVTAFVVSNTVSATPFLVLITFLSGTICYFMVRLHPGFS 534
Query: 487 HFIYFICALFSCLMLVESLMMIVASIVPDFLMGIITGAGIQGIMMLAGGFFRLPNDLPNP 546
H+++F+ L++ + +VESLMM +ASIVP+FLMGII GAGIQGI ML G+FRLP+D+P P
Sbjct: 535 HYVFFVLCLYASVTVVESLMMAIASIVPNFLMGIIIGAGIQGIFMLVSGYFRLPHDIPKP 714
Query: 547 FWRYPMFYISFHRYAFQGSYKNEFEGLKFE 576
WRYPM YISFH +A QG Y+N+ GL F+
Sbjct: 715 VWRYPMSYISFHFWALQGQYQNDLRGLVFD 804
>AV416268
Length = 424
Score = 243 bits (621), Expect = 5e-65
Identities = 121/140 (86%), Positives = 131/140 (93%)
Frame = +3
Query: 119 LTTLTVKEAVYYSAQLQLPDTMSNEEKKERADFTIREMGLQDAINTRIGGWGVKGISGGQ 178
LTTLTV EAVYYSA LQLPD+MS EK+ERADFTI+EMGLQDAINTRIGGWG KG+SGGQ
Sbjct: 3 LTTLTVGEAVYYSAHLQLPDSMSKSEKRERADFTIKEMGLQDAINTRIGGWGSKGVSGGQ 182
Query: 179 KRRVSISIEILTRPRLLFLDEPTSGLDSAASYYVMKRIASLDKKDGIQRTIVASIHQPST 238
KRRVSI IEILT PRLLFLDEPTSGLDSAASY+V+ RI+SL+KKDGIQRTIVASIHQPS
Sbjct: 183 KRRVSICIEILTHPRLLFLDEPTSGLDSAASYHVISRISSLNKKDGIQRTIVASIHQPSN 362
Query: 239 EVFQLFHNLCLLSSGKTVYF 258
E+FQLFH+LCLLSSGKTVYF
Sbjct: 363 EIFQLFHSLCLLSSGKTVYF 422
>TC17528 similar to GB|AAP37786.1|30725528|BT008427 At1g51560 {Arabidopsis
thaliana;}, partial (20%)
Length = 442
Score = 161 bits (408), Expect = 3e-40
Identities = 74/135 (54%), Positives = 100/135 (73%)
Frame = +1
Query: 442 RLNGHYGVTAYVIGNTLSAIPYLLMISLIPGAIAYYPPGLQKGFEHFIYFICALFSCLML 501
RLNG+YGV AY++ N LS+ P+L+ I+L I Y + G HF++F ++S + +
Sbjct: 7 RLNGYYGVAAYILANFLSSFPFLVAIALTTSTITYNMVKFRPGLSHFVFFTLNIYSSISV 186
Query: 502 VESLMMIVASIVPDFLMGIITGAGIQGIMMLAGGFFRLPNDLPNPFWRYPMFYISFHRYA 561
+ESLMM+VAS+VP+FLMGIITGAGI GIMM+ GFFRL +DLP P WRYP+ YIS+ +A
Sbjct: 187 IESLMMVVASLVPNFLMGIITGAGIIGIMMMTSGFFRLLSDLPKPVWRYPISYISYGAWA 366
Query: 562 FQGSYKNEFEGLKFE 576
QGSYKN+ GL+F+
Sbjct: 367 IQGSYKNDLLGLEFD 411
>TC11086
Length = 592
Score = 108 bits (270), Expect = 3e-24
Identities = 50/89 (56%), Positives = 72/89 (80%)
Frame = +1
Query: 549 RYPMFYISFHRYAFQGSYKNEFEGLKFERDEIGGSLNYISGEEILRNKFHVDMSYSKWVD 608
RYP+ YISF++YA+QG +KNEF GL F +++ G + ISGE+ILR+ + V+++YSKWVD
Sbjct: 1 RYPLQYISFNKYAYQGLFKNEFHGLTFPSNQVEGPVT-ISGEDILRHLWQVEVNYSKWVD 177
Query: 609 LGVLLGMIVLYRVVFLIIIKTTEKLKPIV 637
+ +L+GM V YR++FL IIK+ EK+KPIV
Sbjct: 178 VAILVGMAVTYRILFLAIIKSFEKVKPIV 264
>AW720269
Length = 524
Score = 105 bits (261), Expect = 3e-23
Identities = 59/159 (37%), Positives = 100/159 (62%), Gaps = 3/159 (1%)
Frame = +3
Query: 49 SILQGLTGYAKPAQLLAIMGPSGCGKSTLLDALAGRLGSNTRQSGDILINGNKQ---ALA 105
+IL+ ++ A+ ++++A++GPSG GKSTLL +AGR+ I IN + A
Sbjct: 51 NILKSVSFVARSSEIVAVVGPSGTGKSTLLRIIAGRVKDRDFDPKTISINDHPMTSPAQL 230
Query: 106 YGTSAYVTQDDTLLTTLTVKEAVYYSAQLQLPDTMSNEEKKERADFTIREMGLQDAINTR 165
+V Q+D LL LTVKE + +SA+ +L + M+ +++ R + ++E+GL ++
Sbjct: 231 RKICGFVAQEDNLLPLLTVKETLLFSAKFRLKE-MTPNDREMRVESLMQELGLFHVSDSF 407
Query: 166 IGGWGVKGISGGQKRRVSISIEILTRPRLLFLDEPTSGL 204
+G +GISGG+++RVSI ++++ P +L LDEPTSGL
Sbjct: 408 VGDEENRGISGGERKRVSIGVDMIHNPPILLLDEPTSGL 524
>AV771159
Length = 486
Score = 85.1 bits (209), Expect(2) = 4e-23
Identities = 45/100 (45%), Positives = 62/100 (62%)
Frame = -3
Query: 187 EILTRPRLLFLDEPTSGLDSAASYYVMKRIASLDKKDGIQRTIVASIHQPSTEVFQLFHN 246
++L P LL LDEPTSGLDS + ++ I L RT+V +IHQPS+ ++ +F
Sbjct: 343 KLLIHPSLLLLDEPTSGLDSTTALRILNTIPRLATGG---RTVVTTIHQPSSRLYYMFDK 173
Query: 247 LCLLSSGKTVYFGPASAASEFFASNGFPCPPLQNPSDHLL 286
+ LLS G +Y+GPAS A E+F+S GF NP+D LL
Sbjct: 172 VVLLSEGCPIYYGPASTALEYFSSVGFSTCVTVNPADLLL 53
Score = 40.4 bits (93), Expect(2) = 4e-23
Identities = 20/48 (41%), Positives = 31/48 (63%)
Frame = -2
Query: 140 MSNEEKKERADFTIREMGLQDAINTRIGGWGVKGISGGQKRRVSISIE 187
++ +EK + + I E+GL ++ IGG ++GISG +KRRVSI E
Sbjct: 485 LTRDEKVQHVERVITELGLSGCRSSMIGGPLLRGISGAEKRRVSIGQE 342
>BP055095
Length = 538
Score = 92.0 bits (227), Expect = 3e-19
Identities = 54/156 (34%), Positives = 88/156 (55%), Gaps = 1/156 (0%)
Frame = +3
Query: 141 SNEEKKERADFTIREMGLQDAINTRIGGWGVKGISGGQKRRVSISIEILTRPRLLFLDEP 200
S + + D+ ++ +GL + IG +GISGGQK+RV+ ++ + LF+DE
Sbjct: 3 SGQRSQLVTDYALKVLGLDICADVMIGDEMRRGISGGQKKRVTTGEMLVGPAKALFMDEI 182
Query: 201 TSGLDSAASYYVMKRIASLDKKDGIQRTIVASIHQPSTEVFQLFHNLCLLSSGKTVYFGP 260
++GLDS+ ++ + K + + + T+V S+ QP+ E F+LF ++ LLS G+ VY GP
Sbjct: 183 STGLDSSTTFQICKFMRQMVHIMDV--TMVISLLQPAPETFELFDDIILLSEGQIVYQGP 356
Query: 261 ASAASEFFASNGFPCPPLQNPSDHLLK-TINKDFDQ 295
EFF GF CP + +D L + T KD +Q
Sbjct: 357 RENVLEFFEYMGFKCPERKGAADFLQEVTSKKDQEQ 464
>TC18647 similar to UP|Q9ASR9 (Q9ASR9) At2g01320/F10A8.20, partial (17%)
Length = 430
Score = 83.6 bits (205), Expect = 1e-16
Identities = 50/129 (38%), Positives = 78/129 (59%), Gaps = 2/129 (1%)
Frame = +1
Query: 21 GEEKGVCLTWKDLWVTVSASTGKTNESKSILQGLTGYAKPAQLLAIMGPSGCGKSTLLDA 80
G+ V + W ++ + S + K+ + +L+ ++G AKP +LLAIMGPSG GK+TLL+
Sbjct: 25 GKVTPVTIRWSNINCSFSDKSSKS--VRFLLKNVSGEAKPGRLLAIMGPSGSGKTTLLNV 198
Query: 81 LAGRLGSNTR--QSGDILINGNKQALAYGTSAYVTQDDTLLTTLTVKEAVYYSAQLQLPD 138
LAG+L ++ R SG + NG + AYV Q+D + LTV+E + + +LQLP+
Sbjct: 199 LAGQLAASPRLHLSGLLEFNGKPGSKNAYKFAYVRQEDLFFSQLTVRETLSLATELQLPN 378
Query: 139 TMSNEEKKE 147
S EE+ E
Sbjct: 379 ISSAEERDE 405
>TC14510 similar to UP|Q9LMU4 (Q9LMU4) F2H15.7 protein, partial (14%)
Length = 793
Score = 68.2 bits (165), Expect = 4e-12
Identities = 33/73 (45%), Positives = 46/73 (62%)
Frame = +3
Query: 587 ISGEEILRNKFHVDMSYSKWVDLGVLLGMIVLYRVVFLIIIKTTEKLKPIVMSFMSVSPR 646
I GE IL N F +D+S SKWV+L V+L MIV+YR++F I+IK E + P V +M+
Sbjct: 30 IPGEYILENVFQIDVSRSKWVNLSVILSMIVIYRIIFFIMIKINEDVTPWVRGYMARRRM 209
Query: 647 QTRQILENPTATP 659
Q + +N T P
Sbjct: 210 QQKSGAQNTTIAP 248
>BP057421
Length = 547
Score = 66.6 bits (161), Expect = 1e-11
Identities = 45/164 (27%), Positives = 85/164 (51%), Gaps = 33/164 (20%)
Frame = +3
Query: 84 RLGSNTRQSGDILINGNK--QALAYGTSAYVTQDDTLLTTLTVKEAVYYSAQLQ----LP 137
++ R +G+I NG+K + + T+AY++Q+D + +TVKE + +SA+ Q
Sbjct: 24 KMDHELRVTGEITYNGHKLNEFVPRKTAAYISQNDVHVGEMTVKETLDFSARCQGVGTRY 203
Query: 138 DTMSNEEKKER---------------------------ADFTIREMGLQDAINTRIGGWG 170
D +S ++E+ D+T++ +GL +T +G
Sbjct: 204 DXLSELGRREKEAGIFPEAELDLFMKATALKGTESSLITDYTLKILGLDICKDTIVGDEM 383
Query: 171 VKGISGGQKRRVSISIEILTRPRLLFLDEPTSGLDSAASYYVMK 214
+G+SGGQK+RV+ I+ + LF+DE ++GLDS+ ++ ++K
Sbjct: 384 HRGVSGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTFQIVK 515
>BP029778
Length = 438
Score = 60.8 bits (146), Expect = 7e-10
Identities = 47/139 (33%), Positives = 67/139 (47%), Gaps = 16/139 (11%)
Frame = -2
Query: 15 SKKMNGGEEK--GVCLTWKDLWVTVS------------ASTGKTNESKSILQGLTGYAKP 60
S K NGG+ K G+ L ++ VT G +L ++G P
Sbjct: 425 SSKSNGGDHKNKGMILPFQQFTVTFHNVNYYVDMPQEIRKQGIIETKLKLLSNVSGVFAP 246
Query: 61 AQLLAIMGPSGCGKSTLLDALAGRLGSNTRQSGDILING--NKQALAYGTSAYVTQDDTL 118
L A+MG SG GK+TL+D LAGR + GDI I+G Q + YV Q+D
Sbjct: 245 GVLTALMGSSGAGKTTLMDVLAGRKTGGYIE-GDIKISGYPKVQHTFARVAGYVEQNDIH 69
Query: 119 LTTLTVKEAVYYSAQLQLP 137
+TV+E++ +SA L+LP
Sbjct: 68 SPQVTVEESLLFSALLRLP 12
>AV406931
Length = 438
Score = 54.7 bits (130), Expect = 5e-08
Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Frame = +3
Query: 228 TIVASIHQPSTEVFQLFHNLCLLSSGKTVYFGPASAASEFFASNGFPCPPLQNPSDHLLK 287
T V S+ QP+ E + LF ++ L+S G+ VY GP +FF S GF CP + +D L +
Sbjct: 48 TAVISLLQPAPETYDLFDDIILISDGQVVYHGPREYVLDFFESMGFKCPERKGAADFLQE 227
Query: 288 -TINKDFDQ 295
T KD +Q
Sbjct: 228 VTSKKDQEQ 254
>BG662257
Length = 336
Score = 49.3 bits (116), Expect = 2e-06
Identities = 31/81 (38%), Positives = 49/81 (60%)
Frame = +1
Query: 158 LQDAINTRIGGWGVKGISGGQKRRVSISIEILTRPRLLFLDEPTSGLDSAASYYVMKRIA 217
LQ +T +G G++ +SGGQK+RV+I+ I+ P++L LDE TS LD+ + V
Sbjct: 94 LQQGYDTVVGDRGIQ-LSGGQKQRVAIARAIVKSPKILLLDEATSALDAESEKVVQD--- 261
Query: 218 SLDKKDGIQRTIVASIHQPST 238
+LD+ + RT + H+ ST
Sbjct: 262 ALDRV-RVDRTTIVVAHRLST 321
>TC15722 similar to UP|Q9FMU0 (Q9FMU0) Similarity to ABC transporter,
partial (37%)
Length = 624
Score = 47.8 bits (112), Expect = 6e-06
Identities = 30/72 (41%), Positives = 45/72 (61%), Gaps = 6/72 (8%)
Frame = +3
Query: 157 GLQDAINTRIGGWGV------KGISGGQKRRVSISIEILTRPRLLFLDEPTSGLDSAASY 210
GLQ AIN +G G+ + +SGG KRR++++I+++ P LL LDEP +GLD A
Sbjct: 3 GLQRAINW-VGLSGISLDKNPQSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARA 179
Query: 211 YVMKRIASLDKK 222
V+K + L K+
Sbjct: 180 DVVKLLKHLKKE 215
>BP055390
Length = 488
Score = 47.0 bits (110), Expect = 1e-05
Identities = 29/77 (37%), Positives = 46/77 (59%)
Frame = +3
Query: 164 TRIGGWGVKGISGGQKRRVSISIEILTRPRLLFLDEPTSGLDSAASYYVMKRIASLDKKD 223
T++G GV+ +SGGQK+R++I+ IL P +L LDE TS LD+ + V + + +
Sbjct: 204 TQVGQRGVQ-LSGGQKQRIAIARAILKNPPILLLDEATSALDTESEKLVQEALETAMH-- 374
Query: 224 GIQRTIVASIHQPSTEV 240
RT++ H+ ST V
Sbjct: 375 --GRTVILIAHRLSTVV 419
>TC11425 similar to UP|Q9M1Q9 (Q9M1Q9) P-glycoprotein-like proetin, partial
(9%)
Length = 712
Score = 45.1 bits (105), Expect = 4e-05
Identities = 31/85 (36%), Positives = 47/85 (54%), Gaps = 4/85 (4%)
Frame = +2
Query: 174 ISGGQKRRVSISIEILTRPRLLFLDEPTSGLDSAASYYVMKRIASLDKKDGIQRTIVASI 233
+SGGQK+RV+I+ I+ P +L LDE TS LD+ + V +LDK + RT V
Sbjct: 107 LSGGQKQRVAIARAIIKTPNILLLDEATSALDAESERVVQD---ALDKV-MVNRTTVIVA 274
Query: 234 HQPST----EVFQLFHNLCLLSSGK 254
H+ ST +V + N ++ G+
Sbjct: 275 HRLSTIKNADVITVLKNGVIVEKGR 349
>CB827630
Length = 405
Score = 44.7 bits (104), Expect = 5e-05
Identities = 23/60 (38%), Positives = 39/60 (64%)
Frame = +2
Query: 175 SGGQKRRVSISIEILTRPRLLFLDEPTSGLDSAASYYVMKRIASLDKKDGIQRTIVASIH 234
SGG KRR+ ++I ++ PR++++DEP++GLD AS + + L K+D R I+ + H
Sbjct: 140 SGGMKRRLIVAISLIGDPRVVYMDEPSTGLD-PASRKSLWNVVKLAKRD---RAIILTTH 307
>TC18135 homologue to UP|Q9MAY4 (Q9MAY4) ABC transporter homolog, partial
(50%)
Length = 968
Score = 43.9 bits (102), Expect = 8e-05
Identities = 41/174 (23%), Positives = 80/174 (45%), Gaps = 18/174 (10%)
Frame = +3
Query: 66 IMGPSGCGKSTLLDALAGR----------------LGSNTRQSGDILINGNKQALAYGTS 109
++G +GCGKSTLL A+ R + ++ + + +++ +++ L
Sbjct: 390 LLGLNGCGKSTLLTAIGHRELPIPEHMDIYHLTREIEASDMSALEAVVSCDEERLRLEKE 569
Query: 110 A--YVTQDDTLLTTLTVKEAVYYSAQLQLPDTMSNEEKKERADFTIREMGLQDAINTRIG 167
A QDD TL E +Y +L+ D + E+ RA + +G + +
Sbjct: 570 AETLAAQDDGGGETL---ERIY--ERLEALDASTAEK---RAAEILHGLGFDKKMQAK-- 719
Query: 168 GWGVKGISGGQKRRVSISIEILTRPRLLFLDEPTSGLDSAASYYVMKRIASLDK 221
+ SGG + R++++ + P +L LDEPT+ LD A ++ + + + D+
Sbjct: 720 --KTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEESLKNFDR 875
>TC18902 weakly similar to GB|AAP37786.1|30725528|BT008427 At1g51560
{Arabidopsis thaliana;}, partial (11%)
Length = 575
Score = 40.4 bits (93), Expect = 0.001
Identities = 19/55 (34%), Positives = 34/55 (61%)
Frame = +3
Query: 599 VDMSYSKWVDLGVLLGMIVLYRVVFLIIIKTTEKLKPIVMSFMSVSPRQTRQILE 653
+++ +SKW+DL L ++ YR++F I+K E+ P+ F S+ ++T Q LE
Sbjct: 12 IELKHSKWMDLAALFIILACYRLLFFAILKFKERASPL---FQSLYAQRTIQQLE 167
>AV407220
Length = 235
Score = 40.4 bits (93), Expect = 0.001
Identities = 19/33 (57%), Positives = 26/33 (78%)
Frame = +3
Query: 28 LTWKDLWVTVSASTGKTNESKSILQGLTGYAKP 60
LTWKDL V V+ S G+T +++L+GLTGYA+P
Sbjct: 141 LTWKDLTVMVTLSNGET---QNVLEGLTGYAEP 230
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.321 0.138 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,265,630
Number of Sequences: 28460
Number of extensions: 133634
Number of successful extensions: 804
Number of sequences better than 10.0: 63
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 795
length of query: 665
length of database: 4,897,600
effective HSP length: 96
effective length of query: 569
effective length of database: 2,165,440
effective search space: 1232135360
effective search space used: 1232135360
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)
Medicago: description of AC121245.8