BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC121245.10 - phase: 0
(300 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC14181 similar to UP|Q9FE06 (Q9FE06) Phi-1-like protein (AT5g64... 522 e-149
TC14113 similar to UP|O82161 (O82161) Phi-1 protein, partial (87%) 363 e-101
TC7904 similar to UP|O82161 (O82161) Phi-1 protein, partial (86%) 353 2e-98
TC7902 similar to UP|O82161 (O82161) Phi-1 protein, partial (86%) 350 2e-97
TC7905 226 5e-60
TC14005 similar to UP|Q7Y0S8 (Q7Y0S8) Erg-1, partial (25%) 182 8e-47
TC15984 similar to UP|O82161 (O82161) Phi-1 protein, partial (35%) 172 5e-44
TC14175 similar to UP|Q9SII5 (Q9SII5) At2g17230 protein (At2g172... 168 9e-43
BP052983 137 2e-33
TC9586 similar to UP|Q93YZ5 (Q93YZ5) AT5g51550/K17N15_10, partia... 131 1e-31
BP072853 100 5e-25
TC7903 similar to UP|O82161 (O82161) Phi-1 protein, partial (34%) 104 2e-23
BP050411 99 7e-22
TC18155 homologue to UP|O82161 (O82161) Phi-1 protein, partial (... 80 3e-16
BP068658 74 3e-14
TC14112 similar to UP|O82161 (O82161) Phi-1 protein, partial (17%) 72 9e-14
TC15279 weakly similar to UP|Q93YZ5 (Q93YZ5) AT5g51550/K17N15_10... 63 5e-11
AV774417 59 1e-10
AV774571 44 3e-07
AV406671 28 1.9
>TC14181 similar to UP|Q9FE06 (Q9FE06) Phi-1-like protein
(AT5g64260/MSJ1_10), partial (84%)
Length = 1244
Score = 522 bits (1344), Expect = e-149
Identities = 256/307 (83%), Positives = 276/307 (89%), Gaps = 7/307 (2%)
Frame = +2
Query: 1 MASNYYFAIVLSAVLLL-VLPTLSFGELVQEQPLVLKYHNGQLLKGKLTVNLIWYGTFTP 59
MASNY A +LSAVLLL LP L+ G LVQEQPLVLKYHNGQLLKG++TVNLIWYG+F+P
Sbjct: 41 MASNYTLATLLSAVLLLQFLPELTVGALVQEQPLVLKYHNGQLLKGQITVNLIWYGSFSP 220
Query: 60 IQRSIIVDFINSLSTTGAALPSASAWWKTTEKYKVGSSALTVGKQFLHPAYTLGKNLKGK 119
IQRSIIVDF+NSLSTTGAALPSA+AWWKTTEKYK G SAL VGKQFLHPAYTLGK+LKG+
Sbjct: 221 IQRSIIVDFVNSLSTTGAALPSAAAWWKTTEKYKTGPSALVVGKQFLHPAYTLGKSLKGR 400
Query: 120 DLLALATKFNE------LSSITVVLTAKDVNVEGFCMSRCGTHGSVRRGSGGARTPYIWV 173
DLLALA+KF LSSITVVLTAKDV V+GFCMSRCG+HGSVR SG RT Y+WV
Sbjct: 401 DLLALASKFKSSNSNAALSSITVVLTAKDVAVDGFCMSRCGSHGSVR--SGAVRTAYVWV 574
Query: 174 GNAETLCPGQCAWPFHQPIYGPQTPPLVAPNGDVGVDGMVINLATLLAGTVTNPFNNGYF 233
GN+ET CPGQCAWPFHQP+YGPQTPPLVAPNGDVGVDGMVINLATLLAGTVTNPFNNGYF
Sbjct: 575 GNSETQCPGQCAWPFHQPMYGPQTPPLVAPNGDVGVDGMVINLATLLAGTVTNPFNNGYF 754
Query: 234 QGPAAAPLEAVTACTGVFGSGAYPGYAGRVLVDGASGSSYNAHGANGRKYLLPAMWDPQT 293
QGPA APLEAVTACTGVFGSGAYPGY G+VLVDG SG+S+NAHGANGRK+LLPAMWDPQT
Sbjct: 755 QGPATAPLEAVTACTGVFGSGAYPGYPGQVLVDGVSGASFNAHGANGRKFLLPAMWDPQT 934
Query: 294 SACKTLV 300
S CK LV
Sbjct: 935 SVCKPLV 955
Score = 26.6 bits (57), Expect = 5.5
Identities = 14/38 (36%), Positives = 16/38 (41%)
Frame = -3
Query: 163 SGGARTPYIWVGNAETLCPGQCAWPFHQPIYGPQTPPL 200
+GG PYI N CPG C F +T PL
Sbjct: 654 NGGVCGPYIGW*NGHAHCPGHCVSEFPTHT*AVRTAPL 541
>TC14113 similar to UP|O82161 (O82161) Phi-1 protein, partial (87%)
Length = 1315
Score = 363 bits (932), Expect = e-101
Identities = 191/322 (59%), Positives = 229/322 (70%), Gaps = 22/322 (6%)
Frame = +2
Query: 1 MASNYYFAIVLSAVLLLVLPTLSFG-----ELVQEQPLVLKYHNGQLLKGKLTVNLIWYG 55
MAS+ F L LL+ + LSF ELVQ+Q +L+YHNG LL GK++VNLIWYG
Sbjct: 56 MASSQMF---LKIFLLICVFHLSFASRRLNELVQDQSQLLQYHNGPLLYGKISVNLIWYG 226
Query: 56 TFTPIQRSIIVDFINSLS--TTGAALPSASAWWKTTEKYKVGSS---------ALTVGKQ 104
F P Q++I+ DFI SLS TT PS + WWKTTEKY +S +L++GKQ
Sbjct: 227 QFKPSQKAIVSDFITSLSSPTTQTNQPSVATWWKTTEKYYHLTSKKKTTTPRLSLSLGKQ 406
Query: 105 FLHPAYTLGKNLKGKDLLALATKFNELSSITVVLTAKDVNVEGFCMSRCGTHGSVRRGSG 164
L Y+LGK+L K L+ LA+K + ++I VVLT+ DV VEGFCMSRCGTHGS G
Sbjct: 407 ILDEKYSLGKSLTSKHLVELASKGEQRNAINVVLTSSDVAVEGFCMSRCGTHGSSASSVG 586
Query: 165 GARTP-----YIWVGNAETLCPGQCAWPFHQPIYGPQTPP-LVAPNGDVGVDGMVINLAT 218
+ YIWVGN+E CPGQCAWPFHQP+YGPQ+PP L APN DVG+DGMVINLA+
Sbjct: 587 PTKGKSYKFAYIWVGNSEAQCPGQCAWPFHQPMYGPQSPPPLGAPNNDVGLDGMVINLAS 766
Query: 219 LLAGTVTNPFNNGYFQGPAAAPLEAVTACTGVFGSGAYPGYAGRVLVDGASGSSYNAHGA 278
LLAGT TNPF NG+FQG A APLEA +AC GV+G GAYPGYAG +LVD A+G+SYNA G
Sbjct: 767 LLAGTATNPFGNGFFQGAAEAPLEAASACPGVYGKGAYPGYAGNLLVDSATGASYNAKGE 946
Query: 279 NGRKYLLPAMWDPQTSACKTLV 300
NGRKYLLPA++DP TS C TLV
Sbjct: 947 NGRKYLLPALYDPATSKCSTLV 1012
>TC7904 similar to UP|O82161 (O82161) Phi-1 protein, partial (86%)
Length = 1143
Score = 353 bits (906), Expect = 2e-98
Identities = 173/282 (61%), Positives = 209/282 (73%), Gaps = 10/282 (3%)
Frame = +1
Query: 29 QEQPLVLKYHNGQLLKGKLTVNLIWYGTFTPIQRSIIVDFINSLSTTGAAL---PSASAW 85
+ Q L +YH G LL GK++VNLIWYG F P QR+II DFI SLS++ + PS + W
Sbjct: 154 ETQLLKFQYHKGPLLTGKISVNLIWYGKFNPSQRAIIADFITSLSSSPKSTTSQPSVATW 333
Query: 86 WKTTEKYKVGSS---ALTVGKQFLHPAYTLGKNLKGKDLLALATKFNELSSITVVLTAKD 142
WKTTEKY S +L++G Q L Y+LGK+L ++ LA+K + ++I VVLT+ D
Sbjct: 334 WKTTEKYYHNKSPKLSLSLGTQILEEKYSLGKSLTTNQIIKLASKGPQRNAINVVLTSAD 513
Query: 143 VNVEGFCMSRCGTHGSVR----RGSGGARTPYIWVGNAETLCPGQCAWPFHQPIYGPQTP 198
V VEGFC SRCGTHGS G ++ YIWVGN+ET CPGQCAWPFHQPIYGPQ
Sbjct: 514 VVVEGFCSSRCGTHGSSNGARVNGKRSSKFAYIWVGNSETQCPGQCAWPFHQPIYGPQNK 693
Query: 199 PLVAPNGDVGVDGMVINLATLLAGTVTNPFNNGYFQGPAAAPLEAVTACTGVFGSGAYPG 258
PLVAPN DV +DGMVIN+A+LLAGT TNPF NGYFQGP APLEA +ACTGV+G GAYPG
Sbjct: 694 PLVAPNNDVALDGMVINVASLLAGTATNPFGNGYFQGPKEAPLEAASACTGVYGKGAYPG 873
Query: 259 YAGRVLVDGASGSSYNAHGANGRKYLLPAMWDPQTSACKTLV 300
YAG +LVD +G+SYNA+G +GRKYLLPA+ DP+TSAC TLV
Sbjct: 874 YAGNLLVDPTTGASYNANGISGRKYLLPALVDPKTSACSTLV 999
>TC7902 similar to UP|O82161 (O82161) Phi-1 protein, partial (86%)
Length = 1160
Score = 350 bits (897), Expect = 2e-97
Identities = 178/310 (57%), Positives = 217/310 (69%), Gaps = 10/310 (3%)
Frame = +3
Query: 1 MASNYYFAIVLSAVLLLVLPTLSFGELVQEQPLVLKYHNGQLLKGKLTVNLIWYGTFTPI 60
MASN + LL L + + Q L ++H G LL G+++VNLIWYG F P
Sbjct: 60 MASNVLIFTLFLTFSLLQLSSARRLTESETQLLKFQHHKGPLLTGQISVNLIWYGKFKPS 239
Query: 61 QRSIIVDFINSLSTTGAAL---PSASAWWKTTEKYKVGSS---ALTVGKQFLHPAYTLGK 114
QR+II DFI SLS++ + PS WWKTTEKY S AL++G Q L Y+LGK
Sbjct: 240 QRAIIADFITSLSSSPKSTTSQPSVDTWWKTTEKYYHNKSPKLALSLGTQILDEKYSLGK 419
Query: 115 NLKGKDLLALATKFNELSSITVVLTAKDVNVEGFCMSRCGTHGSVR----RGSGGARTPY 170
+L ++ LA+K + ++I VVLT+ +V VEGFC SRCGTHGS G ++ Y
Sbjct: 420 SLTTNQIIKLASKGPQSNAINVVLTSANVVVEGFCSSRCGTHGSSSGARVNGKRSSKFAY 599
Query: 171 IWVGNAETLCPGQCAWPFHQPIYGPQTPPLVAPNGDVGVDGMVINLATLLAGTVTNPFNN 230
IWVGN+ET CPGQCAWPFHQPIYGPQ PLVAPN DV +DGMVIN+A+LLAGT TNPF N
Sbjct: 600 IWVGNSETQCPGQCAWPFHQPIYGPQNKPLVAPNNDVALDGMVINVASLLAGTATNPFGN 779
Query: 231 GYFQGPAAAPLEAVTACTGVFGSGAYPGYAGRVLVDGASGSSYNAHGANGRKYLLPAMWD 290
GYFQGP APLEA +ACTGV+G GAYPGYAG +LVD +G+SYNA+G +GRKYLLPA+ D
Sbjct: 780 GYFQGPKEAPLEAASACTGVYGKGAYPGYAGNLLVDPTTGASYNANGVSGRKYLLPALID 959
Query: 291 PQTSACKTLV 300
P+TSAC TLV
Sbjct: 960 PKTSACSTLV 989
>TC7905
Length = 587
Score = 226 bits (575), Expect = 5e-60
Identities = 102/144 (70%), Positives = 118/144 (81%)
Frame = +1
Query: 157 GSVRRGSGGARTPYIWVGNAETLCPGQCAWPFHQPIYGPQTPPLVAPNGDVGVDGMVINL 216
G+ G ++ YIWVGN+ET C GQCAWPFHQPIYGPQ PLVAPN DV +DGMVIN+
Sbjct: 16 GARMNGKRSSKFAYIWVGNSETQCSGQCAWPFHQPIYGPQNKPLVAPNNDVALDGMVINV 195
Query: 217 ATLLAGTVTNPFNNGYFQGPAAAPLEAVTACTGVFGSGAYPGYAGRVLVDGASGSSYNAH 276
A+LLAGT TNPF NGYFQGP APLEA +ACTGV+G GAYPGYAG +LVD +G+SYNA+
Sbjct: 196 ASLLAGTATNPFGNGYFQGPKEAPLEAASACTGVYGKGAYPGYAGNLLVDPTTGASYNAN 375
Query: 277 GANGRKYLLPAMWDPQTSACKTLV 300
G +GRKYLLPA+ DP+TSAC TLV
Sbjct: 376 GVSGRKYLLPALVDPKTSACSTLV 447
>TC14005 similar to UP|Q7Y0S8 (Q7Y0S8) Erg-1, partial (25%)
Length = 470
Score = 182 bits (461), Expect = 8e-47
Identities = 93/147 (63%), Positives = 121/147 (82%), Gaps = 3/147 (2%)
Frame = -3
Query: 3 SNYYFAIVLSAVLLLVLPTLSFGELVQEQPLVLKYHNGQLLKGKLTVNLIWYGTFTPIQR 62
SNY+ A +A ++L+L + LV++QPLVLKYHNG+LLKG++TVNL WYG+FTPIQR
Sbjct: 432 SNYHHA---TAFVVLLLCGAASAALVEQQPLVLKYHNGELLKGRITVNLFWYGSFTPIQR 262
Query: 63 SIIVDFINSLSTT-GAALPSASAWWKTTEKYKV--GSSALTVGKQFLHPAYTLGKNLKGK 119
SIIVDFINSL+TT GA LPS ++WWKTTE YK+ GSSAL VGKQ +HP+YTLGK+L+
Sbjct: 261 SIIVDFINSLTTTPGAPLPSVASWWKTTENYKLGSGSSALVVGKQTIHPSYTLGKSLQQT 82
Query: 120 DLLALATKFNELSSITVVLTAKDVNVE 146
L++LA+ FN+L++I V+LTAKDV V+
Sbjct: 81 HLVSLASTFNDLAAINVILTAKDVAVD 1
>TC15984 similar to UP|O82161 (O82161) Phi-1 protein, partial (35%)
Length = 517
Score = 172 bits (437), Expect = 5e-44
Identities = 77/109 (70%), Positives = 93/109 (84%)
Frame = +2
Query: 191 PIYGPQTPPLVAPNGDVGVDGMVINLATLLAGTVTNPFNNGYFQGPAAAPLEAVTACTGV 250
PIYGPQ+P LVAPN DVG+DGMVI++A+LLAGTVTNPF N YFQGP APLEA +AC GV
Sbjct: 2 PIYGPQSPALVAPNNDVGLDGMVIHMASLLAGTVTNPFGNEYFQGPKEAPLEAASACAGV 181
Query: 251 FGSGAYPGYAGRVLVDGASGSSYNAHGANGRKYLLPAMWDPQTSACKTL 299
+G GAYPGY G +LVD A+G+SYNA+G NGR++L+PA++DP TS C TL
Sbjct: 182 YGKGAYPGYTGELLVDAATGASYNANGVNGRRFLVPALFDPTTSTCSTL 328
>TC14175 similar to UP|Q9SII5 (Q9SII5) At2g17230 protein
(At2g17230/T23A1.9), partial (82%)
Length = 1447
Score = 168 bits (426), Expect = 9e-43
Identities = 97/278 (34%), Positives = 146/278 (51%), Gaps = 16/278 (5%)
Frame = +3
Query: 35 LKYHNGQLLKGKLTVNLIWYGTFTPIQRSIIVDFINSLSTTGAALPSASAWWKTTEKY-- 92
LKYH G +L + + LIWYG + ++ +I DF+ S+S G PS + WW+T Y
Sbjct: 258 LKYHMGPVLSSPINIYLIWYGNWAQPKKLVIKDFLRSISAAGVPSPSVADWWRTVSLYTD 437
Query: 93 KVG---SSALTVGKQFLHPAYTLGKN---LKGKDLLALATK-----FNELSSITVVLTAK 141
+ G S +T+ ++ Y+ G++ L +D++A A + + I +VLT++
Sbjct: 438 QTGANISRTVTIAGEYADRKYSNGRHLTRLSVQDVIATAVRSKPFPVDHRKGIYLVLTSE 617
Query: 142 DVNVEGFCMSRCGTHGSVRRGSGGARTPYIWVGNAETLCPGQCAWPFHQPIY--GPQTPP 199
DV ++ +C + CG H G PY WVGN+ C CA+PF P Y G
Sbjct: 618 DVTMDEYCRAVCGFHYFTFPSKVGYTLPYAWVGNSGKQCAEVCAYPFAVPEYMAGGGPGK 797
Query: 200 LVAPNGDVGVDGMVINLATLLAGTVTNPFNNGYFQG-PAAAPLEAVTACTGVFGSGAYPG 258
L PNGDVGVDGMV +A LA +NP N ++ G AP E C G++G+G G
Sbjct: 798 LAPPNGDVGVDGMVSVIAHELAELSSNPLVNAWYAGEDPTAPTEIGDLCEGLYGTGGGGG 977
Query: 259 YAGRVLVDGASGSSYNAHGANGRKYLLPAMWDPQTSAC 296
Y G V+ D G ++N +G R++L+ +W P +AC
Sbjct: 978 YIGEVMKD-KGGRTFNLNGLGNRRFLVQWVWSPVLNAC 1088
>BP052983
Length = 443
Score = 137 bits (346), Expect = 2e-33
Identities = 60/77 (77%), Positives = 71/77 (91%)
Frame = -2
Query: 224 VTNPFNNGYFQGPAAAPLEAVTACTGVFGSGAYPGYAGRVLVDGASGSSYNAHGANGRKY 283
VTNPF+NGYFQGPA APLEAV+ACTGVFG G+YPGY G+ LV+ ++G+SY+AHG NGRKY
Sbjct: 442 VTNPFHNGYFQGPATAPLEAVSACTGVFGXGSYPGYPGQXLVEKSTGASYHAHGVNGRKY 263
Query: 284 LLPAMWDPQTSACKTLV 300
LLPAMWDP+TSAC+TLV
Sbjct: 262 LLPAMWDPKTSACRTLV 212
>TC9586 similar to UP|Q93YZ5 (Q93YZ5) AT5g51550/K17N15_10, partial (52%)
Length = 738
Score = 131 bits (330), Expect = 1e-31
Identities = 68/169 (40%), Positives = 94/169 (55%), Gaps = 1/169 (0%)
Frame = +1
Query: 129 NELSSITVVLTAKDVNVEGFCMSRCGTHGSVRRGSGGARTPYIWVGNAETLCPGQCAWPF 188
N S + ++LTA DV V+ FC S CG H G PY WVGN+ LCPGQCA+PF
Sbjct: 7 NPKSGLYLLLTADDVFVQDFCTSVCGFHYFTFPSLVGYTLPYAWVGNSAKLCPGQCAYPF 186
Query: 189 HQPIYGPQTPPLVAPNGDVGVDGMVINLATLLAGTVTNPFNNGYFQG-PAAAPLEAVTAC 247
P + P P +PNGDVGVDGM+ + +A TNP N ++ G P+E C
Sbjct: 187 AVPAFIPNRKPFKSPNGDVGVDGMISVIGHEIAELATNPLANAWYAGQDPTFPVEIADLC 366
Query: 248 TGVFGSGAYPGYAGRVLVDGASGSSYNAHGANGRKYLLPAMWDPQTSAC 296
G++G+G Y G+VL DG G+++N G R++L+ +W + C
Sbjct: 367 EGIYGTGGGGSYTGQVL-DGGDGATFNMKGIR-RRFLVQWVWSHVLNFC 507
>BP072853
Length = 504
Score = 100 bits (250), Expect(2) = 5e-25
Identities = 47/70 (67%), Positives = 57/70 (81%)
Frame = -3
Query: 200 LVAPNGDVGVDGMVINLATLLAGTVTNPFNNGYFQGPAAAPLEAVTACTGVFGSGAYPGY 259
L AP+ DVG+DGMVI+LA+LLAGT TNPF NG+FQG A APLEA +AC G++G GAYP
Sbjct: 502 LGAPHHDVGLDGMVIHLASLLAGTATNPFGNGFFQGAAEAPLEAASACPGLYGKGAYPAI 323
Query: 260 AGRVLVDGAS 269
AG +LVD A+
Sbjct: 322 AGNLLVDSAT 293
Score = 29.6 bits (65), Expect(2) = 5e-25
Identities = 11/13 (84%), Positives = 13/13 (99%)
Frame = -2
Query: 279 NGRKYLLPAMWDP 291
NGRKYLLPA++DP
Sbjct: 263 NGRKYLLPALYDP 225
>TC7903 similar to UP|O82161 (O82161) Phi-1 protein, partial (34%)
Length = 519
Score = 104 bits (259), Expect = 2e-23
Identities = 64/148 (43%), Positives = 90/148 (60%), Gaps = 10/148 (6%)
Frame = +1
Query: 1 MASNYYFAIVLSAVLLLV-LPTLSFGELVQE---QPLVLKYHNGQLLKGKLTVNLIWYGT 56
MAS +F+ VL + L + L L+ ++ E Q L +YH G LL GK++VNLIWYG
Sbjct: 76 MASPVHFSSVLFTIFLTISLLHLTSARILTESETQLLKFQYHKGPLLTGKISVNLIWYGK 255
Query: 57 FTPIQRSIIVDFINSLST---TGAALPSASAWWKTTEKY---KVGSSALTVGKQFLHPAY 110
F P QR+II DFI SLS+ + + PS + WWKTTEKY K +L++G Q L Y
Sbjct: 256 FNPSQRAIIADFITSLSSSPKSTTSQPSVATWWKTTEKYYHNKSPKLSLSLGTQILEEKY 435
Query: 111 TLGKNLKGKDLLALATKFNELSSITVVL 138
+LGK+L ++ LA + + ++I VVL
Sbjct: 436 SLGKSLTTNRIIKLA*QGPQRNAINVVL 519
>BP050411
Length = 484
Score = 99.4 bits (246), Expect = 7e-22
Identities = 48/67 (71%), Positives = 55/67 (81%), Gaps = 1/67 (1%)
Frame = -1
Query: 211 GMVINLATLLAGTVTNPFNNGYFQGPAAAPLEAVTACTGVFGSGAYPG-YAGRVLVDGAS 269
GM+INLAT+LAGTVTNPF+NGYFQGPA APLEAV+ACTGVFG G+YPG R +
Sbjct: 484 GMIINLATMLAGTVTNPFHNGYFQGPATAPLEAVSACTGVFGDGSYPG*PRSRFWWRRVT 305
Query: 270 GSSYNAH 276
G+SYNAH
Sbjct: 304 GASYNAH 284
>TC18155 homologue to UP|O82161 (O82161) Phi-1 protein, partial (18%)
Length = 428
Score = 80.5 bits (197), Expect = 3e-16
Identities = 46/83 (55%), Positives = 53/83 (63%), Gaps = 9/83 (10%)
Frame = +1
Query: 33 LVLKYHNGQLLKGKLTVNLIWYGTFTPIQRSIIVDFINSLS---TTGAALPSASAWWKTT 89
L +YH G LL GK++VNLIWYG F P QR+II DFI SLS TT A PS + WWK T
Sbjct: 169 LKFQYHKGPLLNGKISVNLIWYGKFKPSQRAIISDFITSLSSPKTTITAQPSVATWWKAT 348
Query: 90 EKY----KVGSSA--LTVGKQFL 106
EKY K + A LT+G Q L
Sbjct: 349 EKYYHLTKSPNHALTLTLGAQIL 417
>BP068658
Length = 369
Score = 73.9 bits (180), Expect = 3e-14
Identities = 33/51 (64%), Positives = 39/51 (75%)
Frame = -1
Query: 249 GVFGSGAYPGYAGRVLVDGASGSSYNAHGANGRKYLLPAMWDPQTSACKTL 299
GV+G GA PGYAG +LVD A+G+SY+ NGRKYLLPA +DP TS C TL
Sbjct: 366 GVYGKGASPGYAGHLLVDSATGASYHPQAENGRKYLLPASYDPATSYCSTL 214
>TC14112 similar to UP|O82161 (O82161) Phi-1 protein, partial (17%)
Length = 342
Score = 72.4 bits (176), Expect = 9e-14
Identities = 45/88 (51%), Positives = 56/88 (63%), Gaps = 7/88 (7%)
Frame = +3
Query: 1 MASNYYFAIVLSAVLLLVLPTLSFG-----ELVQEQPLVLKYHNGQLLKGKLTVNLIWYG 55
MAS+ F L LL+ + LSF ELVQ+Q +L+YHNG LL GK++VNLIWYG
Sbjct: 84 MASSQMF---LKIFLLICVFHLSFASRRLNELVQDQSQLLQYHNGPLLYGKISVNLIWYG 254
Query: 56 TFTPIQRSIIVDFINSLS--TTGAALPS 81
F P Q++I+ DFI SLS TT PS
Sbjct: 255 QFKPSQKAIVSDFITSLSSPTTQTNQPS 338
>TC15279 weakly similar to UP|Q93YZ5 (Q93YZ5) AT5g51550/K17N15_10, partial
(28%)
Length = 464
Score = 63.2 bits (152), Expect = 5e-11
Identities = 26/58 (44%), Positives = 38/58 (64%)
Frame = +2
Query: 35 LKYHNGQLLKGKLTVNLIWYGTFTPIQRSIIVDFINSLSTTGAALPSASAWWKTTEKY 92
L+YH G +L ++TV+ IWYG + Q+ II FINS+S T PS + WW+T ++Y
Sbjct: 245 LRYHMGPVLTSRITVHTIWYGKWERSQKKIIRGFINSISATEVPRPSVAGWWRTVQQY 418
>AV774417
Length = 455
Score = 58.5 bits (140), Expect(2) = 1e-10
Identities = 26/39 (66%), Positives = 31/39 (78%)
Frame = -2
Query: 246 ACTGVFGSGAYPGYAGRVLVDGASGSSYNAHGANGRKYL 284
AC GV+G GAYP YAG+ LVD +G+SYNA G NGR+YL
Sbjct: 454 ACPGVYG*GAYPAYAGK*LVDSDTGASYNAKGENGREYL 338
Score = 23.1 bits (48), Expect(2) = 1e-10
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = -3
Query: 280 GRKYLLPAMWDPQTSAC 296
G +PA++DP TS C
Sbjct: 351 GGSICIPALYDPATSKC 301
>AV774571
Length = 144
Score = 44.3 bits (103), Expect(2) = 3e-07
Identities = 19/33 (57%), Positives = 25/33 (75%)
Frame = -1
Query: 242 EAVTACTGVFGSGAYPGYAGRVLVDGASGSSYN 274
EA +AC V+G GAYP YAG +L D A+G+SY+
Sbjct: 144 EAASACPWVYG*GAYPAYAGDLLADSATGASYH 46
Score = 25.8 bits (55), Expect(2) = 3e-07
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = -3
Query: 277 GANGRKYLLPAM 288
G NGRKYLLPA+
Sbjct: 37 GENGRKYLLPAL 2
>AV406671
Length = 416
Score = 28.1 bits (61), Expect = 1.9
Identities = 15/43 (34%), Positives = 21/43 (47%)
Frame = -2
Query: 181 PGQCAWPFHQPIYGPQTPPLVAPNGDVGVDGMVINLATLLAGT 223
P +CAWP P P+T P P V VD V++ +A +
Sbjct: 403 PPRCAWPPRCPRPRPKTVPPPRPKPRVRVDVRVLSTTEKVASS 275
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.319 0.136 0.422
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,662,059
Number of Sequences: 28460
Number of extensions: 84233
Number of successful extensions: 487
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 464
length of query: 300
length of database: 4,897,600
effective HSP length: 90
effective length of query: 210
effective length of database: 2,336,200
effective search space: 490602000
effective search space used: 490602000
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Medicago: description of AC121245.10