BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC121242.7 + phase: 0
(435 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC17522 similar to UP|Q9LRM9 (Q9LRM9) Gb|AAD27719.1, partial (20%) 170 5e-43
AV768646 148 2e-36
TC12335 similar to UP|Q9LRM9 (Q9LRM9) Gb|AAD27719.1, partial (10%) 86 2e-17
TC15170 homologue to UP|Q9XE94 (Q9XE94) Geranylgeranyl hydrogena... 35 0.032
TC15668 similar to UP|O81816 (O81816) Monooxygenase (Monooxygena... 28 2.3
TC17767 similar to UP|Q94CI5 (Q94CI5) Protein kinase AtSIK, part... 28 3.9
BI418990 27 6.6
AV773952 27 6.6
TC15262 similar to UP|Q8GVW5 (Q8GVW5) SKP1, partial (9%) 27 6.6
TC15263 similar to UP|Q8GVW5 (Q8GVW5) SKP1, partial (9%) 27 6.6
TC11814 similar to GB|AAP37709.1|30725374|BT008350 At5g06570 {Ar... 27 8.6
TC9760 27 8.6
TC11433 similar to UP|AAR99871 (AAR99871) Strubbelig receptor fa... 27 8.6
>TC17522 similar to UP|Q9LRM9 (Q9LRM9) Gb|AAD27719.1, partial (20%)
Length = 568
Score = 170 bits (430), Expect = 5e-43
Identities = 82/95 (86%), Positives = 89/95 (93%)
Frame = +1
Query: 340 LGFGDAYSLSRVIAEGIALGSDIGEVNLLKKYEQERKPANVTMMAILDGFQKAYSIDFGP 399
LGFGDA+SLSR IAEGIALGSDIGEVNLL+KYE ERKPAN+ MMA+LDGFQKAYSIDFGP
Sbjct: 1 LGFGDAFSLSRTIAEGIALGSDIGEVNLLRKYEAERKPANIMMMAVLDGFQKAYSIDFGP 180
Query: 400 FNFLRGAAFSGANFVSPLKRSIISYASGERKLPIF 434
FNFLR AAF GAN++SPLKRSIISYASG+ KLPIF
Sbjct: 181 FNFLRAAAFQGANYISPLKRSIISYASGDHKLPIF 285
>AV768646
Length = 435
Score = 148 bits (373), Expect = 2e-36
Identities = 73/86 (84%), Positives = 78/86 (89%)
Frame = -2
Query: 349 SRVIAEGIALGSDIGEVNLLKKYEQERKPANVTMMAILDGFQKAYSIDFGPFNFLRGAAF 408
SRVIAEGIALGSDIGEVNLL+KYE ERK AN+ MMA+LDGFQKAYS DFGPFNFLR AAF
Sbjct: 434 SRVIAEGIALGSDIGEVNLLRKYEAERKQANIMMMAVLDGFQKAYSCDFGPFNFLRAAAF 255
Query: 409 SGANFVSPLKRSIISYASGERKLPIF 434
GAN +SPLK+SIISYASGE KLPIF
Sbjct: 254 QGANSISPLKKSIISYASGEHKLPIF 177
>TC12335 similar to UP|Q9LRM9 (Q9LRM9) Gb|AAD27719.1, partial (10%)
Length = 398
Score = 85.5 bits (210), Expect = 2e-17
Identities = 41/45 (91%), Positives = 43/45 (95%)
Frame = +3
Query: 1 MPMTKQLSVAIIDSNPALSSGLCIKKEDPPDPRVSTVTPASISFL 45
MP+TKQLSVAIIDSNPAL S LCIKKEDPPDPRVSTVTPA+ISFL
Sbjct: 264 MPLTKQLSVAIIDSNPALGSSLCIKKEDPPDPRVSTVTPATISFL 398
>TC15170 homologue to UP|Q9XE94 (Q9XE94) Geranylgeranyl hydrogenase, partial
(45%)
Length = 1018
Score = 34.7 bits (78), Expect = 0.032
Identities = 21/75 (28%), Positives = 33/75 (44%)
Frame = +3
Query: 319 RVVLIGDAAHTIHPLAGQGVNLGFGDAYSLSRVIAEGIALGSDIGEVNLLKKYEQERKPA 378
RV L+GDAA + +G+G+ + I EG G + E L+KY ++
Sbjct: 201 RVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEGSENGKRLVEEGDLRKYLEKWDKT 380
Query: 379 NVTMMAILDGFQKAY 393
+LD QK +
Sbjct: 381 YWPTYKVLDVLQKVF 425
>TC15668 similar to UP|O81816 (O81816) Monooxygenase (Monooxygenase 2) (MO2)
, partial (24%)
Length = 528
Score = 28.5 bits (62), Expect = 2.3
Identities = 25/82 (30%), Positives = 37/82 (44%), Gaps = 12/82 (14%)
Frame = +3
Query: 320 VVLIGDAAHTIHPLAGQGVNLGFGDAYSLSRVIAEGIA------LGSDIGEV----NLLK 369
V + GDA H + P GQG D L+R +A+ + G + E LK
Sbjct: 21 VCVAGDAHHPMTPDLGQGGCCALEDGVVLARCLAKAFSEKSKERKGEEEEEYKRIEESLK 200
Query: 370 KYEQERKPANVTMM--AILDGF 389
KY ERK ++ ++ A + GF
Sbjct: 201 KYADERKWRSIDLISTAYMAGF 266
>TC17767 similar to UP|Q94CI5 (Q94CI5) Protein kinase AtSIK, partial (36%)
Length = 660
Score = 27.7 bits (60), Expect = 3.9
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 11/92 (11%)
Frame = +2
Query: 59 HAYFKKMQVW---DYTGFGYARYDAGDVNKDFLGCVAE---NKVLHSSLLSCIKDSDFKT 112
H + + W YT + Y GD+ L + E +VLH +LLSC+K F+
Sbjct: 185 HVMVQNIDCWFMRGYTMEAWTAYYTGDLMGHQLIGIQE*KLQRVLHKALLSCMKKGLFRQ 364
Query: 113 TFYPS-----RLTSMTLNTNSMSVVEENTPSK 139
S +LT +++ ++ V + P K
Sbjct: 365 CIMNSQQPTYKLTRISVPSSQDMVALDIFPKK 460
>BI418990
Length = 454
Score = 26.9 bits (58), Expect = 6.6
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 116 PSRLTSMTLNTNSMSVVEENTPSKEPSPAQGHAS 149
PS T+ + TNS + +TPS P+P H+S
Sbjct: 100 PSTPTTASSLTNSKPLPITSTPSSSPTPTPTHSS 201
>AV773952
Length = 598
Score = 26.9 bits (58), Expect = 6.6
Identities = 15/36 (41%), Positives = 20/36 (54%), Gaps = 1/36 (2%)
Frame = -3
Query: 70 YTGFGY-ARYDAGDVNKDFLGCVAENKVLHSSLLSC 104
YT GY + +A D N F+G VA + + SLL C
Sbjct: 404 YTSMGYISAMNAKDTNARFVGVVATSSLSTISLLVC 297
>TC15262 similar to UP|Q8GVW5 (Q8GVW5) SKP1, partial (9%)
Length = 665
Score = 26.9 bits (58), Expect = 6.6
Identities = 16/43 (37%), Positives = 25/43 (57%)
Frame = +3
Query: 95 KVLHSSLLSCIKDSDFKTTFYPSRLTSMTLNTNSMSVVEENTP 137
K SSL+ I+ S F + YP++++S + +T S SV TP
Sbjct: 165 KPWRSSLMMMIRPSSFPSPRYPAKISSRSSSTAS-SVAPPPTP 290
>TC15263 similar to UP|Q8GVW5 (Q8GVW5) SKP1, partial (9%)
Length = 433
Score = 26.9 bits (58), Expect = 6.6
Identities = 16/43 (37%), Positives = 25/43 (57%)
Frame = +2
Query: 95 KVLHSSLLSCIKDSDFKTTFYPSRLTSMTLNTNSMSVVEENTP 137
K SSL+ I+ S F + YP++++S + +T S SV TP
Sbjct: 89 KPWRSSLMMMIRPSSFPSPRYPAKISSRSSSTAS-SVAPPPTP 214
>TC11814 similar to GB|AAP37709.1|30725374|BT008350 At5g06570 {Arabidopsis
thaliana;}, partial (23%)
Length = 507
Score = 26.6 bits (57), Expect = 8.6
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +3
Query: 111 KTTFYPSRLTSMTLNTNSMSVVEENTPSKEPSPA 144
KTT PSR S+T N+ S+S N K P+ A
Sbjct: 147 KTTLSPSRTASLTRNSTSLS-ASTNPLHKTPTTA 245
>TC9760
Length = 556
Score = 26.6 bits (57), Expect = 8.6
Identities = 9/27 (33%), Positives = 12/27 (44%)
Frame = +2
Query: 183 TGWNYSQNAIICTVEHTSANHCAWQRF 209
+GW ICT H + C+W F
Sbjct: 116 SGWFIGFTTDICTANHNGRSSCSWYLF 196
>TC11433 similar to UP|AAR99871 (AAR99871) Strubbelig receptor family 3,
partial (24%)
Length = 565
Score = 26.6 bits (57), Expect = 8.6
Identities = 13/43 (30%), Positives = 19/43 (43%), Gaps = 8/43 (18%)
Frame = -1
Query: 170 GKSRVRELAGFKT--------TGWNYSQNAIICTVEHTSANHC 204
G++ EL G K TGWN S N ++ + + N C
Sbjct: 235 GRNTSGELVGRKKKVSHGNWQTGWNTSSNVVVAQINY*DCNKC 107
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.317 0.133 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,296,750
Number of Sequences: 28460
Number of extensions: 99550
Number of successful extensions: 504
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 504
length of query: 435
length of database: 4,897,600
effective HSP length: 93
effective length of query: 342
effective length of database: 2,250,820
effective search space: 769780440
effective search space used: 769780440
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)
Medicago: description of AC121242.7