BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC121241.8 - phase: 0
(972 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AV424786 34 0.13
AV425247 33 0.22
AV769442 32 0.63
BP083437 32 0.63
BI417739 31 1.1
TC10437 30 1.4
TC13103 30 1.4
TC13311 30 1.4
AV413234 30 1.4
TC14989 UP|CD8A_BOVIN (P31783) T-cell surface glycoprotein CD8 a... 30 1.4
TC20042 similar to UP|Q8W154 (Q8W154) Myrosinase (Fragment), par... 30 1.8
TC17191 homologue to UP|Q9SL38 (Q9SL38) At2g18090 protein, parti... 30 1.8
TC19494 weakly similar to UP|Q9SND9 (Q9SND9) Anthranilate N-hydr... 30 2.4
TC19531 similar to UP|Q7XJ60 (Q7XJ60) At3g47690, partial (47%) 29 3.1
TC10249 similar to UP|Q84LL9 (Q84LL9) Salt tolerance protein 3, ... 29 3.1
TC11292 weakly similar to UP|Q9FLY0 (Q9FLY0) Similarity to ornit... 29 3.1
AV772982 29 4.1
TC11973 weakly similar to UP|AAR34269 (AAR34269) Inositol-1-mono... 29 4.1
BP038942 29 4.1
>AV424786
Length = 227
Score = 33.9 bits (76), Expect = 0.13
Identities = 30/77 (38%), Positives = 37/77 (47%), Gaps = 4/77 (5%)
Frame = +2
Query: 41 KNILSTSKTLFSFPPLSTSLFAFKFFFSSLPPHLSFSKLHPFLPKHSFSFDHPFSTFNLL 100
+N S+S T PP S+S A KFF + +P H S +HP S F P ST L
Sbjct: 2 RNTQSSSCTRCLEPPSSSSKQATKFFGTHVPFHRRGSPMHP----PSVRFRLPHSTRTLA 169
Query: 101 SKTLSTFPN----FPLT 113
K +T PN PLT
Sbjct: 170 VKAAAT-PNPALELPLT 217
>AV425247
Length = 417
Score = 33.1 bits (74), Expect = 0.22
Identities = 37/108 (34%), Positives = 48/108 (44%), Gaps = 8/108 (7%)
Frame = +1
Query: 26 LLLLLHNTTTTTNYIKNILSTSKTLFSFPPLSTSLFA---FKFFFSSLP-PHLSFSKLHP 81
L L LH T + + + +T PP T +FA + LP PH HP
Sbjct: 91 LQL*LHLNCTRKH*LTHQSTTHTLPLLPPPTPTPIFAPLLNPHYLLPLPLPH------HP 252
Query: 82 F-LPKHSFSFDHPFSTFNLLSKT---LSTFPNFPLTYNPKAANLIDSL 125
F P+HS S HP F+L S T FP P + PKAA++ SL
Sbjct: 253 FSFPQHSPS-PHPLPIFSLSSSTHFPTHRFPFSPPPHLPKAAHVPSSL 393
>AV769442
Length = 559
Score = 31.6 bits (70), Expect = 0.63
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = -3
Query: 384 EFGCQGRRKSVPVWEMLLSYLY 405
EF C GR S W +LLSYLY
Sbjct: 227 EFNCTGRSSSADSWILLLSYLY 162
>BP083437
Length = 376
Score = 31.6 bits (70), Expect = 0.63
Identities = 14/29 (48%), Positives = 22/29 (75%)
Frame = -3
Query: 482 KDVVGIKGEQKKKMTDLSALRNLTWSSFY 510
+ + I+G +KKK+ DL+AL+NL W+ FY
Sbjct: 104 RQISRIEGHRKKKI-DLNALQNLVWNFFY 21
>BI417739
Length = 591
Score = 30.8 bits (68), Expect = 1.1
Identities = 25/67 (37%), Positives = 30/67 (44%)
Frame = -3
Query: 47 SKTLFSFPPLSTSLFAFKFFFSSLPPHLSFSKLHPFLPKHSFSFDHPFSTFNLLSKTLST 106
S ++F FP F+F SS PP S SKLH HSF L SK+ +T
Sbjct: 367 SISIFPFPDSCCHHLLFRFQASSPPPSSSLSKLH----HHSF----------LSSKSTTT 230
Query: 107 FPNFPLT 113
P LT
Sbjct: 229 EPYLLLT 209
>TC10437
Length = 435
Score = 30.4 bits (67), Expect = 1.4
Identities = 19/76 (25%), Positives = 37/76 (48%)
Frame = +1
Query: 878 PALRVWAPKQKGMKSKKDHLSKIPKRKDRTSACYDTVCETPMTRNTRSMTRNTVCETPMT 937
P + + P K ++ +HL +IP+ + T + + E +R TR+++ ET +T
Sbjct: 109 PIMNSFLPHSKDPSTEPEHLHRIPRTRSVTLSGSWSPIEGRRSRMTRALS-----ETDLT 273
Query: 938 RSTRSSPQSIGSDDHN 953
+ + P S G D +
Sbjct: 274 AAPKRKPPSHGLFDED 321
>TC13103
Length = 730
Score = 30.4 bits (67), Expect = 1.4
Identities = 28/101 (27%), Positives = 43/101 (41%), Gaps = 5/101 (4%)
Frame = +3
Query: 62 AFKFFFSSLPPHLSFSKLHPFLPKHSFSFDHPFSTFNLLS---KTLSTFPNFPLTYNPKA 118
+F F + PH +PFL K S P S +LLS + S F + P + +
Sbjct: 57 SFSFSLKPILPHQPSQTHYPFLSKLQSS---PLSHISLLSHSPRFFSPFLSNPFSLSALR 227
Query: 119 ANLIDSL--TQLLHDYPWEPNSDADTDTTTPLVSPNLILLF 157
+ L+ L + LH P +P S PL+ ++LF
Sbjct: 228 SKLLSLLC*DRSLHPIPLKPRSKRAPQI*FPLLPFTSVVLF 350
>TC13311
Length = 541
Score = 30.4 bits (67), Expect = 1.4
Identities = 22/69 (31%), Positives = 33/69 (46%), Gaps = 3/69 (4%)
Frame = +3
Query: 155 LLFTPFFNSFNSLAGFFDSDEDSL--RIENSFCDRFLGFFGNVSRRFRSKGV-HCSWIGV 211
L + FF+ N DSD+ S+ ++ NS D G +S +KG+ HC+W GV
Sbjct: 216 LFWVLFFSGNNHAVSAVDSDDGSVLFQLRNSLSDPE----GLLSSWDPTKGLSHCAWFGV 383
Query: 212 NSDDKEDEV 220
+ D V
Sbjct: 384 SCDPSSHRV 410
>AV413234
Length = 378
Score = 30.4 bits (67), Expect = 1.4
Identities = 27/68 (39%), Positives = 34/68 (49%), Gaps = 12/68 (17%)
Frame = -1
Query: 17 IVLLIDLDPLLLLLHNTTTTTNYIKNILSTSKT--------LFSFPPLSTSLF----AFK 64
I L I L+PLLLLL T +N I + S++ L P LS+S AF
Sbjct: 336 IALFIILEPLLLLL--PTYLSNEILPLWSSNHF*SLFHLLHLLHHPSLSSSSVLIN*AFT 163
Query: 65 FFFSSLPP 72
FFF +LPP
Sbjct: 162 FFFMALPP 139
>TC14989 UP|CD8A_BOVIN (P31783) T-cell surface glycoprotein CD8 alpha chain
precursor, partial (5%)
Length = 1456
Score = 30.4 bits (67), Expect = 1.4
Identities = 26/79 (32%), Positives = 32/79 (39%), Gaps = 12/79 (15%)
Frame = -3
Query: 46 TSKTLFSFPPLSTSLFAFKFFFSS---LPPHLSFSKLHPFLPKH---------SFSFDHP 93
T+ T FSFPP+ +L F S+ L P L FS L H S + P
Sbjct: 1118 TTLTWFSFPPIHPTLSCSHFILSTIAVLSPTLFFSPTLLKLLNHKRPSATSILSITASQP 939
Query: 94 FSTFNLLSKTLSTFPNFPL 112
T T STF FP+
Sbjct: 938 AITTTSF*TTASTFTTFPI 882
>TC20042 similar to UP|Q8W154 (Q8W154) Myrosinase (Fragment), partial (19%)
Length = 529
Score = 30.0 bits (66), Expect = 1.8
Identities = 19/52 (36%), Positives = 28/52 (53%)
Frame = -2
Query: 28 LLLHNTTTTTNYIKNILSTSKTLFSFPPLSTSLFAFKFFFSSLPPHLSFSKL 79
LLL+ +T + Y + L+ SKT++S PL T FF+ + SFS L
Sbjct: 189 LLLNFSTASEAYRRVSLAFSKTMYSSFPLGTREITQALFFALMHTSRSFSLL 34
>TC17191 homologue to UP|Q9SL38 (Q9SL38) At2g18090 protein, partial (5%)
Length = 598
Score = 30.0 bits (66), Expect = 1.8
Identities = 24/67 (35%), Positives = 32/67 (46%), Gaps = 2/67 (2%)
Frame = -3
Query: 29 LLHNTTTT--TNYIKNILSTSKTLFSFPPLSTSLFAFKFFFSSLPPHLSFSKLHPFLPKH 86
LL TTTT +N +I S S T FP + + F SSL P + F+ +P
Sbjct: 560 LLSPTTTTIISNQSGSISSFSHT--RFPIQTNTALTSPIFNSSLNPRVYFNFSQLMIPNS 387
Query: 87 SFSFDHP 93
SFD+P
Sbjct: 386 *LSFDYP 366
>TC19494 weakly similar to UP|Q9SND9 (Q9SND9) Anthranilate
N-hydroxycinnamoyl/benzoyltransferase-like protein,
partial (4%)
Length = 420
Score = 29.6 bits (65), Expect = 2.4
Identities = 18/54 (33%), Positives = 24/54 (44%)
Frame = +1
Query: 31 HNTTTTTNYIKNILSTSKTLFSFPPLSTSLFAFKFFFSSLPPHLSFSKLHPFLP 84
H T T ++ T + FS PL + F+ FSS P +L HP LP
Sbjct: 64 HTNTNTISFPL*STQTPQPWFSTFPLYSQ*FSTTLQFSSHPQNLPQQSTHPLLP 225
>TC19531 similar to UP|Q7XJ60 (Q7XJ60) At3g47690, partial (47%)
Length = 709
Score = 29.3 bits (64), Expect = 3.1
Identities = 23/69 (33%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
Frame = +1
Query: 49 TLFSFPPLSTSLFAFKFFFSSLPPHLSFSKLHPFLPKHSFSFDHPFSTFNLLSKTLSTFP 108
TL S P L F F F F P ++PF P F F PF + N +L F
Sbjct: 22 TLVSSPLLFRIQFRFLFLFPF--PLYQNQSINPFSPSIQFPFLFPFFSQNKNQNSLLNFL 195
Query: 109 NF-PLTYNP 116
F P + P
Sbjct: 196 RFRPRIFTP 222
>TC10249 similar to UP|Q84LL9 (Q84LL9) Salt tolerance protein 3, partial
(35%)
Length = 1096
Score = 29.3 bits (64), Expect = 3.1
Identities = 15/56 (26%), Positives = 31/56 (54%)
Frame = +2
Query: 719 LQILFRLEILQSEVGRGIEDSSKQKFVKQICLLLENIQCHMEGGFFGDWNLENYVA 774
+Q++ R +++ E+G GI + + VK + ++ + +EGG+ DW +E A
Sbjct: 239 IQVIGRSIVIRIEIGSGIGIEIETQTVKGLGSVMLEVIEMVEGGWTLDWEIEEMEA 406
>TC11292 weakly similar to UP|Q9FLY0 (Q9FLY0) Similarity to ornithine
cyclodeaminase, partial (47%)
Length = 551
Score = 29.3 bits (64), Expect = 3.1
Identities = 20/60 (33%), Positives = 25/60 (41%)
Frame = +2
Query: 55 PLSTSLFAFKFFFSSLPPHLSFSKLHPFLPKHSFSFDHPFSTFNLLSKTLSTFPNFPLTY 114
P S L FF LPP +F PFLP H HPF + + T + PL +
Sbjct: 197 PNSPKLQCLSFF---LPPPHAFLVFFPFLPFHRRQTRHPFPSKLCIQPTWCSGKLCPLQF 367
>AV772982
Length = 444
Score = 28.9 bits (63), Expect = 4.1
Identities = 21/63 (33%), Positives = 29/63 (45%), Gaps = 7/63 (11%)
Frame = -3
Query: 121 LIDSLTQLLHDYP-------WEPNSDADTDTTTPLVSPNLILLFTPFFNSFNSLAGFFDS 173
++ +L L+ YP W SD VSP+L++LFT F +SF SL
Sbjct: 352 VLHALNPLIIPYPESQA*RVWRRTSD---------VSPSLLMLFTRFHSSFLSLMMIDQP 200
Query: 174 DED 176
ED
Sbjct: 199 GED 191
>TC11973 weakly similar to UP|AAR34269 (AAR34269) Inositol-1-monophosphatase
, partial (26%)
Length = 669
Score = 28.9 bits (63), Expect = 4.1
Identities = 21/64 (32%), Positives = 32/64 (49%)
Frame = -1
Query: 69 SLPPHLSFSKLHPFLPKHSFSFDHPFSTFNLLSKTLSTFPNFPLTYNPKAANLIDSLTQL 128
S+P +FS P L + SF++ PF T LSKT P+ T P A++ I + +
Sbjct: 264 SIPLPFNFSVAGPILSR-SFAWSRPFETNTDLSKTQKFPPSIRETV-PPASSTIKTPAAI 91
Query: 129 LHDY 132
H +
Sbjct: 90 SHGF 79
>BP038942
Length = 617
Score = 28.9 bits (63), Expect = 4.1
Identities = 43/162 (26%), Positives = 73/162 (44%), Gaps = 7/162 (4%)
Frame = +3
Query: 17 IVLLIDLDPLLLLLHNTTTTTNYIKNILSTS-KTLFSFPPLS-----TSLFAFKFFFSSL 70
+VL++ L PL ++ + + T +Y+ + + + K + + P S SL++ S
Sbjct: 36 LVLVLVLVPLPVIPTSPSAT*SYLSSFTAMALKKINNTAPKS*QQKYPSLYSTT---PSS 206
Query: 71 PPHLSFSKLHPFLPKHSFSFDHPFSTFNLLSKTLSTFPNFPLTYNPKAANLIDSLTQLLH 130
PP SK P P + + P +F+L S T P+F L Y+P A++L L
Sbjct: 207 PP----SKQPPPPP----TLNPPSCSFSL-STNFPTGPSFKLAYSPTASSLPPFSLSLKS 359
Query: 131 DYPWEPNSDADTDTTTPLV-SPNLILLFTPFFNSFNSLAGFF 171
+ + +PL S NL L +P N+F + FF
Sbjct: 360 GL-----GTSGSPRHSPLTFSANLSLSLSPTTNTFTPVPSFF 470
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.320 0.137 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,630,781
Number of Sequences: 28460
Number of extensions: 269529
Number of successful extensions: 1596
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 1578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1592
length of query: 972
length of database: 4,897,600
effective HSP length: 99
effective length of query: 873
effective length of database: 2,080,060
effective search space: 1815892380
effective search space used: 1815892380
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)
Medicago: description of AC121241.8