BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC121241.7 + phase: 0 /pseudo
(69 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP036421 58 3e-10
TC14671 similar to GB|AAM16192.1|20334872|AY094036 AT3g52300/T25... 25 2.8
BP039439 25 2.8
BP069522 24 4.8
TC15052 24 4.8
AV425832 24 6.3
TC15674 24 6.3
BP064999 24 6.3
BP042687 23 8.2
TC16500 weakly similar to UP|Q93ZM5 (Q93ZM5) At1g05910/T20M3_16,... 23 8.2
TC14285 similar to UP|Q9AXU5 (Q9AXU5) Pathogen-inducible alpha-d... 23 8.2
TC16117 homologue to UP|O80673 (O80673) CPDK-related protein (Ca... 23 8.2
>BP036421
Length = 436
Score = 58.2 bits (139), Expect = 3e-10
Identities = 31/55 (56%), Positives = 40/55 (72%), Gaps = 1/55 (1%)
Frame = +2
Query: 4 QPSERDFKGEASSDKSKSTLERTKEETGWPSFRQVV-DLLKLSLEEFTSSILKFM 57
QPSE++FK +ASS+K K E KEE GWPSFRQ+V DL KLS++ SS +F+
Sbjct: 239 QPSEKEFKDQASSEKPK---ESHKEEPGWPSFRQLVADLSKLSIDALNSSFFQFI 394
>TC14671 similar to GB|AAM16192.1|20334872|AY094036 AT3g52300/T25B15_70
{Arabidopsis thaliana;}, complete
Length = 988
Score = 25.0 bits (53), Expect = 2.8
Identities = 18/47 (38%), Positives = 22/47 (46%)
Frame = +3
Query: 21 STLERTKEETGWPSFRQVVDLLKLSLEEFTSSILKFMSKPHTTERSS 67
S LERT WPSF +KL+ TS L MS P + S+
Sbjct: 96 SRLERTSTGKEWPSFSSP---MKLAGSFPTSVALSTMSTPSSKPSSA 227
>BP039439
Length = 564
Score = 25.0 bits (53), Expect = 2.8
Identities = 18/47 (38%), Positives = 22/47 (46%)
Frame = +1
Query: 21 STLERTKEETGWPSFRQVVDLLKLSLEEFTSSILKFMSKPHTTERSS 67
S LERT WPSF +KL+ TS L MS P + S+
Sbjct: 79 SRLERTSTGKEWPSFSSP---MKLAGSFPTSVALSTMSTPSSKPSSA 210
>BP069522
Length = 429
Score = 24.3 bits (51), Expect = 4.8
Identities = 14/51 (27%), Positives = 29/51 (56%)
Frame = -3
Query: 3 QQPSERDFKGEASSDKSKSTLERTKEETGWPSFRQVVDLLKLSLEEFTSSI 53
++P+ +G+ S ++ R+++ +G + VDL+ SLEEF S++
Sbjct: 295 KEPAHLKRRGDLISKPAEKP-NRSEQGSGKVEEEEEVDLISKSLEEFGSAM 146
>TC15052
Length = 1846
Score = 24.3 bits (51), Expect = 4.8
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 6/40 (15%)
Frame = +3
Query: 36 RQVVDLLKLSLEEFTSSILK------FMSKPHTTERSSSD 69
+ +VD+ S+++FT S+ K F S P ++ SSS+
Sbjct: 1371 QDIVDMYMKSMQQFTESLAKMKLPMDFESGPTSSGNSSSE 1490
>AV425832
Length = 426
Score = 23.9 bits (50), Expect = 6.3
Identities = 9/19 (47%), Positives = 12/19 (62%)
Frame = -2
Query: 51 SSILKFMSKPHTTERSSSD 69
SS + F++ PH T SSD
Sbjct: 329 SSAMSFLNNPHITSNMSSD 273
>TC15674
Length = 648
Score = 23.9 bits (50), Expect = 6.3
Identities = 11/32 (34%), Positives = 17/32 (52%)
Frame = +1
Query: 6 SERDFKGEASSDKSKSTLERTKEETGWPSFRQ 37
S+ F +S K+ +E+T WPSFR+
Sbjct: 163 SKSSFCPNNNSGKNTGIMEQTIVYLNWPSFRK 258
>BP064999
Length = 547
Score = 23.9 bits (50), Expect = 6.3
Identities = 13/29 (44%), Positives = 17/29 (57%)
Frame = -1
Query: 39 VDLLKLSLEEFTSSILKFMSKPHTTERSS 67
+ LL L+L + SIL F+ PH RSS
Sbjct: 439 ITLLLLTLTKPIISILNFLQLPHHLLRSS 353
>BP042687
Length = 502
Score = 23.5 bits (49), Expect = 8.2
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -3
Query: 44 LSLEEFTSSILKFMSKPHTTERSSS 68
L L+EFT +L +S P+T R SS
Sbjct: 113 LHLQEFTCLLLPSISAPNTQLRVSS 39
>TC16500 weakly similar to UP|Q93ZM5 (Q93ZM5) At1g05910/T20M3_16, partial
(6%)
Length = 559
Score = 23.5 bits (49), Expect = 8.2
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +1
Query: 8 RDFKGEASSDKSKSTLERTKEETGWPS 34
R + E + DKS L+RTK+ + +P+
Sbjct: 13 RHVQPEVNMDKSYEALKRTKKTSDFPA 93
>TC14285 similar to UP|Q9AXU5 (Q9AXU5) Pathogen-inducible alpha-dioxygenase,
partial (97%)
Length = 2266
Score = 23.5 bits (49), Expect = 8.2
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -2
Query: 21 STLERTKEETGWPSFRQVVDLLKLSLE 47
S +ERTK++ P +QV+D + S +
Sbjct: 2121 SFIERTKDKLKRPKCKQVIDAVPTSTQ 2041
>TC16117 homologue to UP|O80673 (O80673) CPDK-related protein
(Calcium/calmodulin-dependent protein kinase CaMK3) ,
partial (6%)
Length = 631
Score = 23.5 bits (49), Expect = 8.2
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -2
Query: 29 ETGWPSFRQVVDLLKLSLEE 48
ETGW Q V+LLK +L +
Sbjct: 348 ETGWRKCLQFVELLKRALND 289
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.306 0.122 0.322
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 935,234
Number of Sequences: 28460
Number of extensions: 7422
Number of successful extensions: 44
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of query: 69
length of database: 4,897,600
effective HSP length: 45
effective length of query: 24
effective length of database: 3,616,900
effective search space: 86805600
effective search space used: 86805600
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 48 (23.1 bits)
Medicago: description of AC121241.7