BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC121241.13 - phase: 0 /pseudo
(869 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AU089582 105 2e-39
TC19412 similar to UP|Q84KB0 (Q84KB0) Pol protein, partial (7%) 97 4e-26
AV427422 101 4e-22
BP054462 89 2e-18
BF177840 87 1e-17
BG662087 86 2e-17
BP055130 80 1e-16
AV410603 72 5e-13
BP046863 59 3e-09
TC11573 similar to UP|Q9M6N4 (Q9M6N4) Pol protein integrase regi... 54 1e-07
BP085845 49 3e-06
TC18698 42 4e-04
TC12574 34 0.087
TC13122 similar to UP|Q84Y01 (Q84Y01) Inositol phosphate kinase,... 31 0.74
BP043519 30 1.6
TC17915 similar to GB|AAM10415.1|20147411|AY093799 AT3g05640/F18... 30 1.6
TC8032 similar to UP|Q9M0B6 (Q9M0B6) Nucleotide sugar epimerase-... 29 2.8
BP053926 29 3.7
BP033788 28 4.8
TC14685 weakly similar to UP|Q43383 (Q43383) 2A6 protein, partia... 28 4.8
>AU089582
Length = 383
Score = 105 bits (261), Expect(2) = 2e-39
Identities = 49/83 (59%), Positives = 63/83 (75%)
Frame = +2
Query: 563 AQLAEIYIHNIVKLHGVPSSIVSDRNFRFTSRFWKSLQDALGSKLRVSSAYHPQADGHSE 622
+Q A+IY+ IV LHGVP SI+SDR +FTS FW+S Q ALG++L++S+A+HPQ DG SE
Sbjct: 14 SQYAKIYLDEIVSLHGVPVSIISDRGAQFTSHFWRSFQTALGTRLKMSTAFHPQTDGQSE 193
Query: 623 RTIQSLEDLLRVCVLEQGGAWDS 645
RTIQ LED+LR CV + G S
Sbjct: 194 RTIQILEDMLRACVXDLRGXLGS 262
Score = 75.5 bits (184), Expect(2) = 2e-39
Identities = 32/45 (71%), Positives = 37/45 (82%)
Frame = +3
Query: 641 GAWDSHLPLIEFTYNNSYHSSIGMAPFETLYGRRCRTPLCWFESG 685
G+WD +L L+EF YNNSY SSI MAPFE LYGRRCR+P+ WFE G
Sbjct: 249 GSWDQYLSLMEFAYNNSYRSSI*MAPFEALYGRRCRSPIGWFEVG 383
>TC19412 similar to UP|Q84KB0 (Q84KB0) Pol protein, partial (7%)
Length = 519
Score = 97.1 bits (240), Expect(2) = 4e-26
Identities = 47/79 (59%), Positives = 61/79 (76%)
Frame = +3
Query: 738 RVTPMTGVGRALKSKKLTPKFIGPYQISERVGTVAYRVGLPPHLSNLHDVFHVSQLRKYV 797
RV+PM GV R K KL+P+FIGP+++ ERVG+V+YR+ LPP LS +H VFHVS LRKY+
Sbjct: 3 RVSPMKGVLRFGKKGKLSPRFIGPFEVLERVGSVSYRLALPPDLSAVHPVFHVSMLRKYL 182
Query: 798 ADPSHVIPRADVQVRDNLT 816
DPSHVI DVQ+ +L+
Sbjct: 183 YDPSHVIRHEDVQLDVHLS 239
Score = 38.9 bits (89), Expect(2) = 4e-26
Identities = 18/34 (52%), Positives = 21/34 (60%)
Frame = +2
Query: 835 KDIPLVKVVLGGVTGESLTWELESKMLESYPELF 868
KD+ VKV+ G +GE TWE E M E YP LF
Sbjct: 296 KDVGSVKVLWRGPSGEEATWEAEDIMREKYPHLF 397
>AV427422
Length = 417
Score = 101 bits (252), Expect = 4e-22
Identities = 50/120 (41%), Positives = 73/120 (60%), Gaps = 6/120 (5%)
Frame = +1
Query: 553 VDEFDAFFPVAQ------LAEIYIHNIVKLHGVPSSIVSDRNFRFTSRFWKSLQDALGSK 606
+ +F F P+ +A+I++ +V+LHGVP SIVSDR+ F S FWK L G+K
Sbjct: 58 LSKFSHFVPLKHPYTAKVIADIFVREVVRLHGVPLSIVSDRDPLFMSNFWKELFKMQGTK 237
Query: 607 LRVSSAYHPQADGHSERTIQSLEDLLRVCVLEQGGAWDSHLPLIEFTYNNSYHSSIGMAP 666
L++S+AYHP++DG +E + LE LR + +Q +W +P E+ YN SYH S G P
Sbjct: 238 LKMSTAYHPESDGQTEVVNRCLETYLRCFIADQPKSWAHWVPWAEYWYNTSYHVSTGQTP 417
>BP054462
Length = 422
Score = 89.4 bits (220), Expect = 2e-18
Identities = 51/141 (36%), Positives = 81/141 (57%), Gaps = 1/141 (0%)
Frame = +1
Query: 655 NNSYHSSIGMAPFETLYGRRCRTPLCWFESGESVLLGPDLVHQTIEKVQMIREKMKASQS 714
N++Y+ S M+PF+ LYGR L + DL E + +R + SQ
Sbjct: 1 NSNYNRSAKMSPFQALYGREPPVLLQGTTIPSKIAAVNDLQVGRDELLSDLRANLLKSQD 180
Query: 715 RQKSYHDKRKKALEFQEGDHVFLRVTPMTGVGRALK-SKKLTPKFIGPYQISERVGTVAY 773
++Y +K+++ +++Q GD VFL++ P A K ++KL+P++ GPY I ++G VAY
Sbjct: 181 MMRTYANKKRRDVDYQIGDEVFLKLQPYRRRSLAKKMNEKLSPRYYGPYPIVAKIGAVAY 360
Query: 774 RVGLPPHLSNLHDVFHVSQLR 794
R+ LP H S +H VFHVS L+
Sbjct: 361 RLELPAH-SRVHPVFHVSLLK 420
>BF177840
Length = 410
Score = 87.0 bits (214), Expect = 1e-17
Identities = 50/130 (38%), Positives = 71/130 (54%)
Frame = +2
Query: 581 SSIVSDRNFRFTSRFWKSLQDALGSKLRVSSAYHPQADGHSERTIQSLEDLLRVCVLEQG 640
+SIVSDR+ +F S FW++L +G+KL S+ HPQ DG +E ++L LLR +
Sbjct: 11 TSIVSDRDTKFISHFWRTLWGKVGTKLLYSTTCHPQTDGQTEVVNKTLSTLLRSVLERNL 190
Query: 641 GAWDSHLPLIEFTYNNSYHSSIGMAPFETLYGRRCRTPLCWFESGESVLLGPDLVHQTIE 700
W++ LP IEF YN HS+ +PFE +YG TPL + LL E
Sbjct: 191 KMWETWLPHIEFAYNRVVHSTTKHSPFEIVYGYNPLTPLDLLPMPNTYLLKHKDGKAKAE 370
Query: 701 KVQMIREKMK 710
V+ + EK+K
Sbjct: 371 FVKRLHEKIK 400
>BG662087
Length = 373
Score = 86.3 bits (212), Expect = 2e-17
Identities = 43/113 (38%), Positives = 64/113 (56%)
Frame = +1
Query: 2 IDYRQLNKVTIKNRYPLPRIDDLMDQLVGARVFSKIDLSSGYHQIKVKDEDMQKTAFRTR 61
+DY LNK K+ YPLP ID L+D + S +D SGYHQIK+ D KTAF T
Sbjct: 34 VDYTDLNKACPKDSYPLPSIDKLVDGASDNELLSLMDAYSGYHQIKMHPSDEDKTAFMTA 213
Query: 62 YGHYEYKVMPFGVTNAPGVFMEYMNRIFHAYLDKFVVVFSDDILIYSKNEEEH 114
+Y Y+ +PFG+ NA + M+R+F + + + V+ D++++ S H
Sbjct: 214 RVNYCYQTIPFGLKNAGATYQXLMDRVFXDXVGRNMEVYLDNMIVKSALRANH 372
>BP055130
Length = 567
Score = 79.7 bits (195), Expect(2) = 1e-16
Identities = 42/90 (46%), Positives = 56/90 (61%)
Frame = +2
Query: 558 AFFPVAQLAEIYIHNIVKLHGVPSSIVSDRNFRFTSRFWKSLQDALGSKLRVSSAYHPQA 617
A + +Q+AE ++ IVKLHG+P +IVSDR+ FTS FWK G+ L +SS+YHPQ
Sbjct: 245 ANYTSSQVAETFVSTIVKLHGMPRAIVSDRDKAFTSAFWKHFFKLHGTTLNMSSSYHPQT 424
Query: 618 DGHSERTIQSLEDLLRVCVLEQGGAWDSHL 647
DG +E + LE LR V E W S+L
Sbjct: 425 DGQTEALNKCLELYLRCFVHETPRLWVSYL 514
Score = 24.3 bits (51), Expect(2) = 1e-16
Identities = 9/17 (52%), Positives = 13/17 (75%)
Frame = +3
Query: 647 LPLIEFTYNNSYHSSIG 663
LP E+ YN+S+ +SIG
Sbjct: 516 LPWAEYCYNSSFQTSIG 566
>AV410603
Length = 162
Score = 71.6 bits (174), Expect = 5e-13
Identities = 30/53 (56%), Positives = 42/53 (78%)
Frame = +1
Query: 11 TIKNRYPLPRIDDLMDQLVGARVFSKIDLSSGYHQIKVKDEDMQKTAFRTRYG 63
T+K+ +P+P +D+L+D+L G++ FSK+DL SGYHQI VK ED KT FRT +G
Sbjct: 4 TVKDSFPMPTVDELLDELRGSQFFSKLDLRSGYHQILVKPEDRHKTVFRTHHG 162
>BP046863
Length = 580
Score = 58.9 bits (141), Expect = 3e-09
Identities = 37/114 (32%), Positives = 67/114 (58%), Gaps = 5/114 (4%)
Frame = +1
Query: 687 SVLLGPDLVHQTIEK----VQMIREKMKASQSRQKSYHDKRKKALEFQEGDHVFLRVTPM 742
S+ L + V+ IE+ + +R + +Q + ++ +K ++ +++Q G+ VFL++ P
Sbjct: 241 SIKLSVEAVNMLIEERDALLLELRGNLLKAQDQMRAQANKHRRYVDYQVGNWVFLKLQPY 420
Query: 743 TGVGRAL-KSKKLTPKFIGPYQISERVGTVAYRVGLPPHLSNLHDVFHVSQLRK 795
A K++KL+P+F GP+++ ERV VAY + L S +H VFH+S L K
Sbjct: 421 KLQNLAQRKNQKLSPRFYGPFKVLERVVQVAY*LDLXSE-SRVHPVFHLSLLEK 579
>TC11573 similar to UP|Q9M6N4 (Q9M6N4) Pol protein integrase region
(Fragment), partial (10%)
Length = 572
Score = 53.5 bits (127), Expect = 1e-07
Identities = 28/94 (29%), Positives = 47/94 (49%)
Frame = +2
Query: 586 DRNFRFTSRFWKSLQDALGSKLRVSSAYHPQADGHSERTIQSLEDLLRVCVLEQGGAWDS 645
+ +FTS+ + D +G ++R SS HPQ +G +E + + ++ + E G W
Sbjct: 8 ENGIQFTSKQTQDFCDGMGIQMRFSSVKHPQTNGQTEAANKVILKGIKRRLYEAEGRWID 187
Query: 646 HLPLIEFTYNNSYHSSIGMAPFETLYGRRCRTPL 679
LP++ ++YN SSI PF YG P+
Sbjct: 188 ELPIVLWSYNTMPQSSIKETPF*LTYGADTMLPV 289
>BP085845
Length = 464
Score = 49.3 bits (116), Expect = 3e-06
Identities = 33/106 (31%), Positives = 56/106 (52%)
Frame = -2
Query: 750 KSKKLTPKFIGPYQISERVGTVAYRVGLPPHLSNLHDVFHVSQLRKYVADPSHVIPRADV 809
K +K K IGP++I E V +AY + +L H V HV+ L + + D S I V
Sbjct: 421 KKRKTESKIIGPFKILEMVCLIAY*LTHSLYLLAAHIVLHVTLLWRNLYDQSQNICHEGV 242
Query: 810 QVRDNLTIETLPLRIEYREVKKLRGKDIPLVKVVLGGVTGESLTWE 855
+ ++ + P+ + +V+ +R K+I VKV+ G++G +WE
Sbjct: 241 XLGEHWSHMEHPIVMVDMKVRCMRPKNIDDVKVIWRGLSG*EKSWE 104
>TC18698
Length = 808
Score = 42.0 bits (97), Expect = 4e-04
Identities = 20/61 (32%), Positives = 34/61 (54%)
Frame = -2
Query: 54 QKTAFRTRYGHYEYKVMPFGVTNAPGVFMEYMNRIFHAYLDKFVVVFSDDILIYSKNEEE 113
+KT + +Y Y+VMP G+ N + M++IFH + K V V+ +D+++ S E
Sbjct: 804 KKTTLKINRVNYYYQVMPLGLKNI*TTYQRLMDKIFHKQI*KNVEVYVEDMIVKSSQE*F 625
Query: 114 H 114
H
Sbjct: 624 H 622
>TC12574
Length = 325
Score = 34.3 bits (77), Expect = 0.087
Identities = 13/33 (39%), Positives = 24/33 (72%)
Frame = +2
Query: 81 FMEYMNRIFHAYLDKFVVVFSDDILIYSKNEEE 113
F +N IF ++ + F++VF +DIL Y++++EE
Sbjct: 2 FKNSVNHIFESFFEHFMIVFINDILSYTEDKEE 100
>TC13122 similar to UP|Q84Y01 (Q84Y01) Inositol phosphate kinase, partial
(14%)
Length = 637
Score = 31.2 bits (69), Expect = 0.74
Identities = 18/61 (29%), Positives = 30/61 (48%), Gaps = 1/61 (1%)
Frame = +3
Query: 94 DKFVVVFSDDILIYSKNEEEHAEHMKIVLQLLKEKKLYAKLSK-CEFWLSEVSFLGHIIS 152
+K + F D++ + EEE E K KEK+ ++ K C FW++ +S + I
Sbjct: 123 EKVLTEFFCDVMCQKQQEEEQGEGDKAASPAEKEKEKSVQV*KNCVFWVTRISSVDPIAG 302
Query: 153 G 153
G
Sbjct: 303 G 305
>BP043519
Length = 456
Score = 30.0 bits (66), Expect = 1.6
Identities = 20/59 (33%), Positives = 27/59 (44%)
Frame = +3
Query: 16 YPLPRIDDLMDQLVGARVFSKIDLSSGYHQIKVKDEDMQKTAFRTRYGHYEYKVMPFGV 74
Y LP + LMD+ GA D Y + + K AFR +YG + VMPF +
Sbjct: 237 YALPMLSILMDKGTGAVTSVPSDAPDDYMALL---DLKSKPAFRAKYGVKDEWVMPFEI 404
>TC17915 similar to GB|AAM10415.1|20147411|AY093799 AT3g05640/F18C1_9
{Arabidopsis thaliana;}, partial (37%)
Length = 506
Score = 30.0 bits (66), Expect = 1.6
Identities = 23/81 (28%), Positives = 38/81 (46%)
Frame = +2
Query: 32 RVFSKIDLSSGYHQIKVKDEDMQKTAFRTRYGHYEYKVMPFGVTNAPGVFMEYMNRIFHA 91
RVF +D G H++ + DE+ A +G +Y V +G+ + P V +
Sbjct: 26 RVFC-LDDEPGVHRVCLPDEESPGLAMSRAFG--DYCVKEYGLISVPEVTQRNITS---- 184
Query: 92 YLDKFVVVFSDDILIYSKNEE 112
D+FVV+ +D + NEE
Sbjct: 185 -KDQFVVLATDGVWDVISNEE 244
>TC8032 similar to UP|Q9M0B6 (Q9M0B6) Nucleotide sugar epimerase-like
protein, partial (97%)
Length = 2230
Score = 29.3 bits (64), Expect = 2.8
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +3
Query: 650 IEFTYNNSYHSSIGMAPFETLYGRRCRTPLCWFESGESVLLG-PDLVHQTIEKVQMIRE 707
I TYN+ Y SI F T+YG R + +F ++L G P V++ +V + R+
Sbjct: 909 ITHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNRVDLARD 1085
>BP053926
Length = 562
Score = 28.9 bits (63), Expect = 3.7
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Frame = +1
Query: 34 FSKIDLSSGYHQIKVKDEDMQKTAFRTR---YGHYEYKVMPFGVTNAPGV 80
+ + SS ++I D ++Q AF T+ GH +YK + + V + PG+
Sbjct: 226 YPNVGKSSFINKITRADVEVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGI 375
>BP033788
Length = 518
Score = 28.5 bits (62), Expect = 4.8
Identities = 13/43 (30%), Positives = 25/43 (57%)
Frame = +3
Query: 597 KSLQDALGSKLRVSSAYHPQADGHSERTIQSLEDLLRVCVLEQ 639
KSLQ G+++++ + P+ D ERT+Q D ++ V ++
Sbjct: 75 KSLQTKSGARIQLIPQHLPEGDDSKERTVQVTGDKRQIEVAQE 203
>TC14685 weakly similar to UP|Q43383 (Q43383) 2A6 protein, partial (38%)
Length = 1323
Score = 28.5 bits (62), Expect = 4.8
Identities = 15/35 (42%), Positives = 23/35 (64%), Gaps = 1/35 (2%)
Frame = +2
Query: 393 WVC*RLIVIS*TIS*KRRKLMSSLWI-*WLLVIEL 426
W C R+I++ + +R LMSSLW+ WLL +E+
Sbjct: 842 WCC-RIILVGCRLGPQRGGLMSSLWMELWLLTLEI 943
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.337 0.148 0.477
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,673,915
Number of Sequences: 28460
Number of extensions: 229893
Number of successful extensions: 1558
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 1535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1557
length of query: 869
length of database: 4,897,600
effective HSP length: 98
effective length of query: 771
effective length of database: 2,108,520
effective search space: 1625668920
effective search space used: 1625668920
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 59 (27.3 bits)
Medicago: description of AC121241.13