BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC121241.11 + phase: 0 /pseudo
(175 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP065719 42 8e-05
AV407955 28 1.1
TC14095 homologue to UP|RS2_ARATH (P49688) 40S ribosomal protein... 26 3.3
TC13744 weakly similar to UP|Q39126 (Q39126) HYP1 protein (T4P13... 26 3.3
TC14793 similar to UP|Q96569 (Q96569) L-lactate dehydrogenase (... 25 7.4
AV772199 25 7.4
BP033255 25 7.4
TC13795 similar to UP|Q93ZN3 (Q93ZN3) AT4g17070/dl4565c, partial... 25 7.4
BP043855 25 7.4
BP037456 25 7.4
TC18069 homologue to UP|Q9SMD1 (Q9SMD1) SUMO protein, partial (81%) 25 9.7
TC18629 25 9.7
TC13809 25 9.7
>BP065719
Length = 567
Score = 41.6 bits (96), Expect = 8e-05
Identities = 29/102 (28%), Positives = 46/102 (44%), Gaps = 6/102 (5%)
Frame = +3
Query: 46 QFFGSPTEDPNLHVSIFLRLSGTLKANQEAVRLHLFPFSLRDRASAWFHSLKIGSIISWD 105
+F G E H++ + +G L N E +++ FP SL A WF +L S+ +W
Sbjct: 195 KFSGDSGESTVEHIARYQIEAGDLAIN-ENLKMKYFPSSLTKNAFTWFTTLAPRSVHTWA 371
Query: 106 QMRKAFLSQFF------PHSKTAQLRIKSHSSLKKMVNLFTM 141
Q+ + F QFF A ++ K S+ +N F M
Sbjct: 372 QLERIFHEQFFRGECKVSXKDLASVKRKPAESIDDYLNRFRM 497
>AV407955
Length = 402
Score = 27.7 bits (60), Expect = 1.1
Identities = 15/43 (34%), Positives = 23/43 (52%)
Frame = -2
Query: 80 LFPFSLRDRASAWFHSLKIGSIISWDQMRKAFLSQFFPHSKTA 122
LFP S+RDR+ + +G S ++R FL++ F TA
Sbjct: 143 LFP*SVRDRSGDFSWDA*VGETFSEGELRVEFLAELFSF*ATA 15
>TC14095 homologue to UP|RS2_ARATH (P49688) 40S ribosomal protein S2,
partial (88%)
Length = 1134
Score = 26.2 bits (56), Expect = 3.3
Identities = 18/56 (32%), Positives = 28/56 (49%)
Frame = -2
Query: 80 LFPFSLRDRASAWFHSLKIGSIISWDQMRKAFLSQFFPHSKTAQLRIKSHSSLKKM 135
L PF L+D+ + S KIG ++ W + L + F KT L+ SSL ++
Sbjct: 875 LHPFLLKDKGLCCWLSQKIGILLEWRFGETSLLPE-FRCQKTIGLQQTIKSSLDEI 711
>TC13744 weakly similar to UP|Q39126 (Q39126) HYP1 protein (T4P13.21
protein), partial (26%)
Length = 744
Score = 26.2 bits (56), Expect = 3.3
Identities = 15/38 (39%), Positives = 21/38 (54%)
Frame = +3
Query: 80 LFPFSLRDRASAWFHSLKIGSIISWDQMRKAFLSQFFP 117
LF L + ASAW SL GS+ S+ ++ + L FP
Sbjct: 627 LFVVKLSE*ASAWAFSLGNGSVNSFWKLLQFLLIDVFP 740
>TC14793 similar to UP|Q96569 (Q96569) L-lactate dehydrogenase (LDH) ,
partial (27%)
Length = 569
Score = 25.0 bits (53), Expect = 7.4
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -2
Query: 72 NQEAVRLHLFPFSLRDRASAWFHSLKIGS 100
NQ+ ++ H P + +S WFH K S
Sbjct: 367 NQDKIKYHSVPKVILIASSMWFHDRKFKS 281
>AV772199
Length = 495
Score = 25.0 bits (53), Expect = 7.4
Identities = 14/59 (23%), Positives = 25/59 (41%), Gaps = 1/59 (1%)
Frame = -3
Query: 103 SWDQMRKAFLSQFFPHSKTAQLRIKSHSSLKKMVNLFTMR-GSVSKKCLGFAPIMVLRI 160
SW + ++ Q+ HS T +K H + F + VS P++++RI
Sbjct: 367 SWSRTQRVLFGQYVSHSPTDTDILKGHIHCNLQNHFFKLLFDRVSMYLFVLCPVLLIRI 191
>BP033255
Length = 526
Score = 25.0 bits (53), Expect = 7.4
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -2
Query: 118 HSKTAQLRIKSHSSLKKMVNLFTMRGSVSKKCLG 151
H+KT +SHSS + +V + RGS K+C G
Sbjct: 372 HAKTYP---RSHSSTRHLVMSGSWRGSSEKECDG 280
>TC13795 similar to UP|Q93ZN3 (Q93ZN3) AT4g17070/dl4565c, partial (6%)
Length = 526
Score = 25.0 bits (53), Expect = 7.4
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 105 DQMRKAFLSQFFPHSKTAQLRIKSHS 130
+++RKA + F H+ A LRI HS
Sbjct: 62 EELRKAMKIENFKHAVAAPLRIHCHS 139
>BP043855
Length = 520
Score = 25.0 bits (53), Expect = 7.4
Identities = 11/48 (22%), Positives = 26/48 (53%)
Frame = -2
Query: 125 RIKSHSSLKKMVNLFTMRGSVSKKCLGFAPIMVLRIGLVSTLFIMVFC 172
R+ + + ++ + N F ++G V K C P+ + ++ + ++ VFC
Sbjct: 471 RLATQTFIRPLTNGFQIQGCVWKACDFVGPVERCIVHVI*S*YLSVFC 328
>BP037456
Length = 433
Score = 25.0 bits (53), Expect = 7.4
Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 2/45 (4%)
Frame = +1
Query: 81 FPFSLR--DRASAWFHSLKIGSIISWDQMRKAFLSQFFPHSKTAQ 123
FP SL+ D + + HSL W M K + +Q +PHSKT +
Sbjct: 139 FPNSLQASD*PTIYIHSL------GW--MSKGYTNQNYPHSKTIE 249
>TC18069 homologue to UP|Q9SMD1 (Q9SMD1) SUMO protein, partial (81%)
Length = 548
Score = 24.6 bits (52), Expect = 9.7
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +3
Query: 125 RIKSHSSLKKMVNLFTMRGSVSKKCLGF 152
RIK ++ LKK++N + R SV + F
Sbjct: 153 RIKRNTQLKKLMNAYCDRQSVELNSIAF 236
>TC18629
Length = 454
Score = 24.6 bits (52), Expect = 9.7
Identities = 13/34 (38%), Positives = 17/34 (49%)
Frame = +3
Query: 63 LRLSGTLKANQEAVRLHLFPFSLRDRASAWFHSL 96
L + G K+ R+ FPFSL S +F SL
Sbjct: 54 LTIDGLFKSCSSRHRILFFPFSLPTPTSIFFFSL 155
>TC13809
Length = 528
Score = 24.6 bits (52), Expect = 9.7
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Frame = -2
Query: 90 SAWFHSLKIGSIISWDQMRKAFLSQFFPHSKTAQLRIKSHSSLKKMV-NLFTMRGSVSKK 148
S FH +K+ SII + + SQ FP S L + H + +++ LF V
Sbjct: 488 SQCFHFMKVISIIQDKMVGDYYQSQAFPRS----L*LMKHCNCSRVI*ALFITPSFV--L 327
Query: 149 CLGFAPIMVLRIGLVSTLFIMVF 171
C+ P + + + +V T ++ F
Sbjct: 326 CMSIVPSLGMIMVIVDTKRVLSF 258
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.326 0.138 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,057,647
Number of Sequences: 28460
Number of extensions: 39433
Number of successful extensions: 263
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 263
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 263
length of query: 175
length of database: 4,897,600
effective HSP length: 84
effective length of query: 91
effective length of database: 2,506,960
effective search space: 228133360
effective search space used: 228133360
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)
Medicago: description of AC121241.11