TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC121241.10 + phase: 0 /pseudo
         (330 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC11423                                                                34  0.030
CB827128                                                               28  2.8
BP066881                                                               27  6.2

>TC11423 
          Length = 563

 Score = 34.3 bits (77), Expect = 0.030
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +1

Query: 3   DSSNFVHSIIPKFDGHYDHWAMFM 26
           +S NF    +P FDG YDHW++ M
Sbjct: 490 ESGNFTTPCVPIFDGDYDHWSLVM 561


>CB827128 
          Length = 556

 Score = 27.7 bits (60), Expect = 2.8
 Identities = 26/101 (25%), Positives = 51/101 (49%), Gaps = 1/101 (0%)
 Frame = +1

Query: 110 IRAQLQ-ALRRDFEILHMKEGETINTYFSRTLTIANKMKAHSEIMSQTIITEKILRSMVS 168
           + +QLQ AL+R  E    KE E  +    +   +  ++K H E   + +   +  +S + 
Sbjct: 151 VESQLQEALQRHAE----KEAEAKDLN-EKLNALEGQIKLHEEQAREAVAVSETHKSGLE 315

Query: 169 KIDYVVCSIEESNNLDTMTIDELQSSLVHEQRIKSNGEEEN 209
           +      S+ +  +L+T+ +DELQ+ L+H ++  +   EEN
Sbjct: 316 E------SLLKLKHLETV-VDELQNKLLHHEKETAGLNEEN 417


>BP066881 
          Length = 449

 Score = 26.6 bits (57), Expect = 6.2
 Identities = 17/55 (30%), Positives = 31/55 (55%), Gaps = 2/55 (3%)
 Frame = -1

Query: 157 IITEKILRSMVSKIDYVVCSIEESNN--LDTMTIDELQSSLVHEQRIKSNGEEEN 209
           I T KI +  VS  + ++  I+ S +  LD+   +E +  L+H+  I+ NGE ++
Sbjct: 392 ISTVKIAQVHVSAAECLLEIIKLSRDVTLDSTINEEFKEELLHQYEIEKNGEAKS 228


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.334    0.144    0.439 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,924,165
Number of Sequences: 28460
Number of extensions: 52616
Number of successful extensions: 451
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 451
length of query: 330
length of database: 4,897,600
effective HSP length: 91
effective length of query: 239
effective length of database: 2,307,740
effective search space: 551549860
effective search space used: 551549860
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 55 (25.8 bits)