Medicago
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC121240.11 + phase: 0 /pseudo
         (153 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC7796 homologue to gb|AF036495.1|AF036495 Hamamelis virginiana ...   246  1e-66
TC7805 homologue to PIR|PQ0772|PQ0772 4-coumarate-CoA ligase  (c...    57  1e-09
TC15031 weakly similar to UP|Q69107 (Q69107) LAT protein, partia...    31  0.11
TC11782 similar to UP|Q9LUV6 (Q9LUV6) Genomic DNA, chromosome 3,...    28  0.70
TC10315 similar to UP|P93166 (P93166) SCOF-1, partial (42%)            27  1.2
AV779148                                                               27  1.2
TC10650                                                                27  1.6
AV406612                                                               27  1.6
TC12500 similar to GB|AAH45354.1|28279536|BC045354 FNBP4 protein...    27  2.0
TC16419                                                                26  2.7
TC17410                                                                26  3.5
BP067043                                                               26  3.5
TC18850 similar to UP|Q41414 (Q41414) Epoxide hydrolase  , parti...    26  3.5
TC15655 similar to UP|Q8LE99 (Q8LE99) Transketolase-like protein...    26  3.5
TC8053 similar to UP|Q94A20 (Q94A20) AT4g15470/dl3775w, partial ...    26  3.5
AV421787                                                               25  4.5
TC12427 similar to UP|Q9LK21 (Q9LK21) Genomic DNA, chromosome 3,...    25  4.5
BP050025                                                               25  4.5
NP817340 galactomannan galactosyltransferase [Lotus japonicus]         25  4.5
CB829112                                                               25  5.9

>TC7796 homologue to gb|AF036495.1|AF036495 Hamamelis virginiana large
            subunit 26S ribosomal RNA gene, partial sequence,
            complete
          Length = 6006

 Score =  246 bits (629), Expect = 1e-66
 Identities = 118/126 (93%), Positives = 120/126 (94%)
 Frame = -2

Query: 1    MIGIADIEGSKSNVAMNAWMPQASYPCGNFSDTSSFKFRRSKGSIGHAFTVGIRTGNQNQ 60
            MIG ADIEGSKSNVAMNAW+PQASYPCGNFSDTSSFKFRRSKGSIGHAFTV IRTGNQNQ
Sbjct: 5486 MIGRADIEGSKSNVAMNAWLPQASYPCGNFSDTSSFKFRRSKGSIGHAFTVRIRTGNQNQ 5307

Query: 61   TSFYPFVPHEISVLVKLILGHLRYLLTDVPPQPNSPPDNVFRPDRPTKVGLGSKKRGSAP 120
            TSFYPFVPHEISVLV+LILGHLRYLLTDVPPQPNSPPDNVFRPDRP K  L SKKRGSAP
Sbjct: 5306 TSFYPFVPHEISVLVELILGHLRYLLTDVPPQPNSPPDNVFRPDRPAKASLRSKKRGSAP 5127

Query: 121  PPIHGI 126
            PPIHGI
Sbjct: 5126 PPIHGI 5109



 Score = 60.5 bits (145), Expect = 1e-10
 Identities = 33/73 (45%), Positives = 40/73 (54%), Gaps = 10/73 (13%)
 Frame = -3

Query: 91   PQPNSPPDNVFRPDRPTKVGLGSKKRGSAP---PPIHGI-------ITDPFCRLPLPTLF 140
            P P  PP    RP    +     +++ +     PP   +       +TDPFCRLPLPTLF
Sbjct: 4654 PFPIRPPTGTRRPALAAEAARAVRRQPTGSELGPPCPALRANPFPEVTDPFCRLPLPTLF 4475

Query: 141  HRPEAVHLGDLMR 153
            H PEAVHLGDLMR
Sbjct: 4474 H*PEAVHLGDLMR 4436


>TC7805 homologue to PIR|PQ0772|PQ0772 4-coumarate-CoA ligase  (clone
           GM4CL1B) -                soybean (fragment) {Glycine
           max;}  , partial (41%)
          Length = 965

 Score = 57.0 bits (136), Expect = 1e-09
 Identities = 25/33 (75%), Positives = 26/33 (78%)
 Frame = -1

Query: 85  LLTDVPPQPNSPPDNVFRPDRPTKVGLGSKKRG 117
           L   +PPQPNSPPDNVFRPDRP K  L SKKRG
Sbjct: 101 LSISLPPQPNSPPDNVFRPDRPAKASLRSKKRG 3


>TC15031 weakly similar to UP|Q69107 (Q69107) LAT protein, partial (27%)
          Length = 997

 Score = 30.8 bits (68), Expect = 0.11
 Identities = 13/42 (30%), Positives = 19/42 (44%)
 Frame = +2

Query: 58  QNQTSFYPFVPHEISVLVKLILGHLRYLLTDVPPQPNSPPDN 99
           + Q SFYP  P    +    +   + YL    PP P  PP++
Sbjct: 176 REQKSFYPRCPPPAKITTTALYASMLYLTLSPPPLPPPPPES 301


>TC11782 similar to UP|Q9LUV6 (Q9LUV6) Genomic DNA, chromosome 3, P1 clone:
           MCB17, partial (12%)
          Length = 468

 Score = 28.1 bits (61), Expect = 0.70
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +2

Query: 91  PQPNSPPDNVFRPDRPTKVGLGSKKRGSAPPPIHG 125
           P+PN  P      D P  +     +RG  PPP +G
Sbjct: 263 PKPNPNPSPKHPTDHPPLIPFPFPERGPPPPPAYG 367


>TC10315 similar to UP|P93166 (P93166) SCOF-1, partial (42%)
          Length = 592

 Score = 27.3 bits (59), Expect = 1.2
 Identities = 27/93 (29%), Positives = 33/93 (35%), Gaps = 27/93 (29%)
 Frame = +3

Query: 57  NQNQTSFYPFVPHEISVLV------KLILGHLRYLLTDVPPQP----------------- 93
           NQN+TS + F     S L       KLI   L    T  PP P                 
Sbjct: 51  NQNKTSLFQFQVFTFSSLSFRIRSQKLIK*WLWKPSTHPPPPPHPSRSTTTQPSVTRRSR 230

Query: 94  ----NSPPDNVFRPDRPTKVGLGSKKRGSAPPP 122
               N+P D V  P + T +   S    +APPP
Sbjct: 231 GQNGNAPSDLVHAPRKSTSLSASSCSLAAAPPP 329


>AV779148 
          Length = 537

 Score = 27.3 bits (59), Expect = 1.2
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +3

Query: 85  LLTDVPPQPNSPPDNVFRP 103
           +++DVPPQP  P + V RP
Sbjct: 81  VVSDVPPQPEKPAEKVPRP 137


>TC10650 
          Length = 636

 Score = 26.9 bits (58), Expect = 1.6
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +3

Query: 77  LILGHLRYLLTDV-PPQPNSPPDNVFRPD 104
           L+L  L + L++  PP P  PP N + PD
Sbjct: 453 LLLNFLFFFLSEFKPPNPPEPPANPYHPD 539


>AV406612 
          Length = 313

 Score = 26.9 bits (58), Expect = 1.6
 Identities = 12/39 (30%), Positives = 19/39 (47%)
 Frame = +1

Query: 91  PQPNSPPDNVFRPDRPTKVGLGSKKRGSAPPPIHGIITD 129
           P  NSPP++   P +P        +  +APPP++    D
Sbjct: 40  PFLNSPPNHSLIPPQPMDTAAAIPEPEAAPPPLYDSAID 156


>TC12500 similar to GB|AAH45354.1|28279536|BC045354 FNBP4 protein {Danio
           rerio;} , partial (5%)
          Length = 678

 Score = 26.6 bits (57), Expect = 2.0
 Identities = 18/63 (28%), Positives = 27/63 (42%)
 Frame = +1

Query: 81  HLRYLLTDVPPQPNSPPDNVFRPDRPTKVGLGSKKRGSAPPPIHGIITDPFCRLPLPTLF 140
           HL  L T  PP   +           T+  L S  +  +PPP +G+ T P   LP+ ++ 
Sbjct: 421 HLTSLTTPSPPSSRTTI---------TQTPLPSPPQPPSPPPKYGVATIPPPPLPMSSID 573

Query: 141 HRP 143
             P
Sbjct: 574 RTP 582


>TC16419 
          Length = 532

 Score = 26.2 bits (56), Expect = 2.7
 Identities = 11/24 (45%), Positives = 15/24 (61%)
 Frame = -3

Query: 93  PNSPPDNVFRPDRPTKVGLGSKKR 116
           P+SPP N  +  +   +GLG KKR
Sbjct: 332 PSSPPRNCLQVSQRCLLGLGEKKR 261


>TC17410 
          Length = 420

 Score = 25.8 bits (55), Expect = 3.5
 Identities = 13/28 (46%), Positives = 14/28 (49%)
 Frame = +2

Query: 88  DVPPQPNSPPDNVFRPDRPTKVGLGSKK 115
           D P  P  PP N+F  D    VG GS K
Sbjct: 11  DEPNNPPPPPLNLFAGDDSVGVGSGSVK 94


>BP067043 
          Length = 530

 Score = 25.8 bits (55), Expect = 3.5
 Identities = 15/35 (42%), Positives = 19/35 (53%), Gaps = 5/35 (14%)
 Frame = +1

Query: 91  PQPNSPPDNVFRPDRPT-----KVGLGSKKRGSAP 120
           P P  PPDN   P+ PT      VG+GS+K   +P
Sbjct: 310 PNPPEPPDNPCHPN-PT*PINLTVGIGSEKLRFSP 411


>TC18850 similar to UP|Q41414 (Q41414) Epoxide hydrolase  , partial (22%)
          Length = 474

 Score = 25.8 bits (55), Expect = 3.5
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = -3

Query: 124 HGIITDPFCRLPLPTLFHRPEAVHL 148
           HG   D     PLPT  H PE  HL
Sbjct: 175 HGAFLDGGSVPPLPTQPHHPEVAHL 101


>TC15655 similar to UP|Q8LE99 (Q8LE99) Transketolase-like protein, partial
           (17%)
          Length = 575

 Score = 25.8 bits (55), Expect = 3.5
 Identities = 11/30 (36%), Positives = 13/30 (42%)
 Frame = +1

Query: 118 SAPPPIHGIITDPFCRLPLPTLFHRPEAVH 147
           S P P H  +  P    PLP    RP  +H
Sbjct: 64  SLPSPPHAPLFPPLLHAPLPPRLLRPPPIH 153


>TC8053 similar to UP|Q94A20 (Q94A20) AT4g15470/dl3775w, partial (82%)
          Length = 1109

 Score = 25.8 bits (55), Expect = 3.5
 Identities = 9/16 (56%), Positives = 12/16 (74%)
 Frame = -3

Query: 44  SIGHAFTVGIRTGNQN 59
           S+ H FT+G+ TGN N
Sbjct: 480 SLKHNFTIGVSTGNSN 433


>AV421787 
          Length = 250

 Score = 25.4 bits (54), Expect = 4.5
 Identities = 13/43 (30%), Positives = 16/43 (36%)
 Frame = +2

Query: 87  TDVPPQPNSPPDNVFRPDRPTKVGLGSKKRGSAPPPIHGIITD 129
           T   P P+SPP + +    P      S    SA  P     TD
Sbjct: 98  TQPKPPPHSPPTSAYGTPSPPPPSAASSSTPSAAAPAPATTTD 226


>TC12427 similar to UP|Q9LK21 (Q9LK21) Genomic DNA, chromosome 3, TAC
           clone:K17E12, partial (20%)
          Length = 597

 Score = 25.4 bits (54), Expect = 4.5
 Identities = 19/63 (30%), Positives = 23/63 (36%)
 Frame = +1

Query: 72  SVLVKLILGHLRYLLTDVPPQPNSPPDNVFRPDRPTKVGLGSKKRGSAPPPIHGIITDPF 131
           SV  K +L H        PP+ + P     RP+        S   G A   IH    DPF
Sbjct: 253 SVFFKFLLKHRLQNRIQAPPETSDPFGVTSRPEESVAAANPSFTDGVATKDIH---IDPF 423

Query: 132 CRL 134
             L
Sbjct: 424 TSL 432


>BP050025 
          Length = 552

 Score = 25.4 bits (54), Expect = 4.5
 Identities = 15/47 (31%), Positives = 18/47 (37%)
 Frame = +1

Query: 76  KLILGHLRYLLTDVPPQPNSPPDNVFRPDRPTKVGLGSKKRGSAPPP 122
           K +   L       PP+P+SP        RPT    G K  G  P P
Sbjct: 133 KTVYASLTGFRRTTPPEPDSPDQ------RPTVEVTGHKAHGPVPQP 255


>NP817340 galactomannan galactosyltransferase [Lotus japonicus]
          Length = 1314

 Score = 25.4 bits (54), Expect = 4.5
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
 Frame = -1

Query: 68   PHEISVLVKLILGHLRYLLTDV----PPQPNSPPDNVFRP 103
            P  +  +  ++L HL   L D+    PPQP+ PP ++  P
Sbjct: 1113 PPPLPKIFHMLLPHLAIPLADLLRVPPPQPSHPPLHLIVP 994


>CB829112 
          Length = 234

 Score = 25.0 bits (53), Expect = 5.9
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +3

Query: 90  PPQPNSPPDNVFRPDRPTKVGLGSKKRGSA 119
           PP P  PP     P  P+++   S KR SA
Sbjct: 117 PPPPPPPPATHILPMTPSRMTQMSSKRSSA 206


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.321    0.141    0.442 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,084,280
Number of Sequences: 28460
Number of extensions: 53482
Number of successful extensions: 438
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 433
length of query: 153
length of database: 4,897,600
effective HSP length: 82
effective length of query: 71
effective length of database: 2,563,880
effective search space: 182035480
effective search space used: 182035480
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)


Medicago: description of AC121240.11