TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC121239.4 - phase: 0 
         (442 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC13782 similar to UP|Q9ST97 (Q9ST97) Alpha-1,3-mannosyl-glycopr...   116  8e-27
BP039630                                                               32  0.27
TC11985 similar to GB|AAF40452.1|7211981|F13M7 ESTs gb|N65605, g...    30  0.61
TC13056 similar to UP|IF38_MEDTR (Q9XHM1) Eukaryotic translation...    30  0.80
TC17928                                                                27  8.8

>TC13782 similar to UP|Q9ST97 (Q9ST97) Alpha-1,3-mannosyl-glycoprotein
           beta-1,2-N-acetylglucosaminyltransferase  , partial
           (14%)
          Length = 522

 Score =  116 bits (290), Expect = 8e-27
 Identities = 56/60 (93%), Positives = 58/60 (96%)
 Frame = +3

Query: 383 RIKYKDQWDFENIAQQFGIFQEWKDGVPRTAYKGVVVFRYQTTKRIFLVGPESLKLLQIE 442
           RIKYKDQ DFE+IA QFGIFQEWKDGVPRTAYKGVVVFRYQ+TKRIFLVGPESLKLLQIE
Sbjct: 3   RIKYKDQSDFESIASQFGIFQEWKDGVPRTAYKGVVVFRYQSTKRIFLVGPESLKLLQIE 182


>BP039630 
          Length = 550

 Score = 31.6 bits (70), Expect = 0.27
 Identities = 23/87 (26%), Positives = 41/87 (46%)
 Frame = +3

Query: 133 ISSRFPLFVSQDGSNSDVKRKALSYDELSHMQHLDFEPVQTERPGELIAYYKIARHYKWA 192
           +   F  F+SQ  S +   R       LS++ H+D + +   RPGEL+  ++ +   K A
Sbjct: 261 LEEAFCKFLSQPVSVTCSSRTDAGVHALSNVCHVDIQRISKRRPGELLTPHEPSVVRK-A 437

Query: 193 LGQLFDKHNFNRVIILEDDMEIAPDFF 219
           +     KH+ + ++I   D+   P  F
Sbjct: 438 VNHFLQKHDNDLMVI---DVRCVPSDF 509


>TC11985 similar to GB|AAF40452.1|7211981|F13M7 ESTs gb|N65605, gb|N38087,
           gb|T20485, gb|T13726, gb|N38339, gb|F15440 and gb|N97201
           come from this gene. {Arabidopsis thaliana;}, partial
           (88%)
          Length = 1334

 Score = 30.4 bits (67), Expect = 0.61
 Identities = 28/122 (22%), Positives = 51/122 (40%), Gaps = 2/122 (1%)
 Frame = +3

Query: 266 GWMLARSTWDELSPKWPKAYWDDWLRLKENHKGRQFIRPEVCRTYNFG--EHGSSLGQFF 323
           G+ LA+S W +   K  K   D WLR K+  + R+ +  +  R++       G++L    
Sbjct: 555 GFELAKSCWKQRGMKKTKRENDGWLREKQRKRRREGLERKSSRSWKKTRLREGANLDCLR 734

Query: 324 KQYLEPIKLNEVQVDWKSMDLSYLLEDKYVIHFANIIKKAKPVSGADFAQKARHIDGDVR 383
           + + +P             +LS ++E+K          KA  +     + K  H + D R
Sbjct: 735 RSHQQP-------------NLSTVVEEKKSCLPVRPATKADQMRECLRSLKQNHKEDDAR 875

Query: 384 IK 385
           +K
Sbjct: 876 VK 881


>TC13056 similar to UP|IF38_MEDTR (Q9XHM1) Eukaryotic translation initiation
           factor 3 subunit 8 (eIF3 p110) (eIF3c), partial (12%)
          Length = 607

 Score = 30.0 bits (66), Expect = 0.80
 Identities = 19/59 (32%), Positives = 29/59 (48%)
 Frame = -1

Query: 152 RKALSYDELSHMQHLDFEPVQTERPGELIAYYKIARHYKWALGQLFDKHNFNRVIILED 210
           R++LS + L H + LD  P    RPG+     K+  +   AL Q     NF+ ++ L D
Sbjct: 514 RQSLSQEILQHHKSLDVNPGSLVRPGDTHDLLKLLVNLVKALLQTHPVINFDSILHLVD 338


>TC17928 
          Length = 555

 Score = 26.6 bits (57), Expect = 8.8
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = +3

Query: 355 HFANIIKKAKPVSGADFAQKARHIDGDVRIKYK--DQWDFENIAQQFGIF 402
           H   I+K+   +SG   + KA     D ++  +  D+  FEN  +Q G+F
Sbjct: 165 HNLEIVKELGTLSGCTLSYKALGGRNDYKVALETLDKLQFENPLEQLGLF 314


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.324    0.139    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,280,237
Number of Sequences: 28460
Number of extensions: 95219
Number of successful extensions: 402
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 402
length of query: 442
length of database: 4,897,600
effective HSP length: 93
effective length of query: 349
effective length of database: 2,250,820
effective search space: 785536180
effective search space used: 785536180
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (26.6 bits)