BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC121239.10 - phase: 0
(90 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC9910 similar to UP|Q9FFC7 (Q9FFC7) Alanyl-tRNA synthetase, par... 148 1e-37
AV780046 37 6e-04
TC9045 similar to UP|O81373 (O81373) Cotton fiber expressed prot... 28 0.28
TC16065 weakly similar to UP|Q9SBM1 (Q9SBM1) Hydroxyproline-rich... 27 0.62
TC12667 similar to PIR|D96525|D96525 protein T1N15.19 [imported]... 27 0.81
TC17789 similar to PIR|T05768|T05768 subtilisin-like proteinase ... 27 0.81
TC15560 similar to SP|Q03173|NDPP_MOUSE NPC derived proline rich... 26 1.1
AW163904 26 1.1
BP034485 26 1.4
TC14532 similar to UP|Q9FYA8 (Q9FYA8) SC35-like splicing factor ... 26 1.4
TC19962 26 1.4
AV414511 26 1.4
TC12082 weakly similar to UP|Q40385 (Q40385) Pistil extensin-lik... 25 1.8
AV424458 25 1.8
BP043858 25 1.8
TC15645 similar to UP|ROA3_HUMAN (P51991) Heterogeneous nuclear ... 25 1.8
TC14984 similar to GB|AAM62447.1|21553354|AY085214 glycine-rich ... 25 1.8
TC16374 similar to UP|Q7LZA6 (Q7LZA6) Protamine II (Fragment), p... 25 1.8
AV423672 25 1.8
AV409241 25 1.8
>TC9910 similar to UP|Q9FFC7 (Q9FFC7) Alanyl-tRNA synthetase, partial
(8%)
Length = 530
Score = 148 bits (374), Expect = 1e-37
Identities = 74/82 (90%), Positives = 76/82 (92%)
Frame = +3
Query: 9 AIVLGSCPGEGKVSLVAAFTPGVVGQGIQAGKFIGQIAKLCGGGGGGRPNFAQAGGRKPE 68
A+VLGSCPGEGKVSLVAAFTPGVV +GIQAGKFIGQIAKLCGGGGGGRPNFAQAGGRKPE
Sbjct: 3 AVVLGSCPGEGKVSLVAAFTPGVVDRGIQAGKFIGQIAKLCGGGGGGRPNFAQAGGRKPE 182
Query: 69 NLAGALEKAKSELIAYLCEKGN 90
NL ALEKAKSELIA L EK N
Sbjct: 183NLTSALEKAKSELIATLSEK*N 248
>AV780046
Length = 570
Score = 37.0 bits (84), Expect = 6e-04
Identities = 21/31 (67%), Positives = 25/31 (79%), Gaps = 1/31 (3%)
Frame = -2
Query: 19 GKVSLVAAFTPGVVGQGIQAG-KFIGQIAKL 48
GKVSLVAAFT G+V +GIQA + +G IAKL
Sbjct: 569 GKVSLVAAFTSGLVDRGIQAR*RLLG*IAKL 477
>TC9045 similar to UP|O81373 (O81373) Cotton fiber expressed protein 1,
partial (17%)
Length = 1201
Score = 28.1 bits (61), Expect = 0.28
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Frame = +1
Query: 35 GIQAGKFIGQIAK----LCGGGGGGRPNFAQAGGRKPENLAGALEKAKSELIAY 84
G+ +G ++ ++ + GGGGGG F+ GG + ENLA L++ +S A+
Sbjct: 154 GVVSGGYVYEVEAKTHAVIGGGGGGN-GFSVIGGEE-ENLAPILQRKESLEFAF 309
>TC16065 weakly similar to UP|Q9SBM1 (Q9SBM1) Hydroxyproline-rich
glycoprotein DZ-HRGP precursor, partial (20%)
Length = 608
Score = 26.9 bits (58), Expect = 0.62
Identities = 19/44 (43%), Positives = 22/44 (49%), Gaps = 3/44 (6%)
Frame = -1
Query: 25 AAFTPGVVGQGIQAGKFIG---QIAKLCGGGGGGRPNFAQAGGR 65
AA PG G G Q G+ G Q + G GGGG P + GGR
Sbjct: 386 AAAAPGGGGPGPQGGRGYGGPPQGGRGGGYGGGGGPGYG-GGGR 258
>TC12667 similar to PIR|D96525|D96525 protein T1N15.19 [imported] -
Arabidopsis thaliana {Arabidopsis thaliana;}, partial
(10%)
Length = 498
Score = 26.6 bits (57), Expect = 0.81
Identities = 13/31 (41%), Positives = 15/31 (47%)
Frame = -1
Query: 34 QGIQAGKFIGQIAKLCGGGGGGRPNFAQAGG 64
Q + G G +L GGGGGG F GG
Sbjct: 351 QAVDEGDPFGPGMELVGGGGGGCDFFGGGGG 259
>TC17789 similar to PIR|T05768|T05768 subtilisin-like proteinase -
Arabidopsis thaliana {Arabidopsis
thaliana;} , partial (14%)
Length = 940
Score = 26.6 bits (57), Expect = 0.81
Identities = 10/15 (66%), Positives = 12/15 (79%)
Frame = +1
Query: 43 GQIAKLCGGGGGGRP 57
G+ A+LCG GGGG P
Sbjct: 526 GEEAELCGDGGGGDP 570
>TC15560 similar to SP|Q03173|NDPP_MOUSE NPC derived proline rich protein 1
(NDPP-1). {Mus musculus;}, partial (8%)
Length = 1134
Score = 26.2 bits (56), Expect = 1.1
Identities = 17/52 (32%), Positives = 23/52 (43%)
Frame = -3
Query: 17 GEGKVSLVAAFTPGVVGQGIQAGKFIGQIAKLCGGGGGGRPNFAQAGGRKPE 68
G G V G+V +G G++ G+ CGGG GG GG + E
Sbjct: 313 GHGFVGCGGGVEGGIVEEGSGDGRWEGR-GGACGGGSGG----GDGGGNEGE 173
>AW163904
Length = 416
Score = 26.2 bits (56), Expect = 1.1
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = +2
Query: 40 KFIGQIAKLCGGGGGGRPNFAQAGGRKPENLAGALE--KAKSELIAYLCE 87
KF Q + GGGGGG + +A P + A +E + K +L+A L E
Sbjct: 32 KFSNQNSSNPGGGGGGGDSSKEAPPPPPLSAADRIEHQRRKVKLLAMLDE 181
>BP034485
Length = 485
Score = 25.8 bits (55), Expect = 1.4
Identities = 15/39 (38%), Positives = 17/39 (43%)
Frame = +3
Query: 40 KFIGQIAKLCGGGGGGRPNFAQAGGRKPENLAGALEKAK 78
KF+G K GGGGG A K +N G K K
Sbjct: 114 KFLGLGKKSKKGGGGGGGETANKNKNKNKNNGGGNNKGK 230
>TC14532 similar to UP|Q9FYA8 (Q9FYA8) SC35-like splicing factor SCL30a, 30a
kD, partial (71%)
Length = 1073
Score = 25.8 bits (55), Expect = 1.4
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
Frame = +3
Query: 50 GGGGGGRPNFAQAGGR---KPENLAGAL 74
GGGGGGR + GGR +P +L +L
Sbjct: 93 GGGGGGRSPSPRGGGRYGPRPRDLPTSL 176
>TC19962
Length = 374
Score = 25.8 bits (55), Expect = 1.4
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +3
Query: 35 GIQAGKFIGQIAKLCGGGGGGRPNFAQAGG 64
G+ ++ G + L GGGGGG FA GG
Sbjct: 90 GVGLERYSGAVVMLGGGGGGG---FAGDGG 170
>AV414511
Length = 424
Score = 25.8 bits (55), Expect = 1.4
Identities = 13/32 (40%), Positives = 17/32 (52%)
Frame = -1
Query: 20 KVSLVAAFTPGVVGQGIQAGKFIGQIAKLCGG 51
K+ LV V +G+ G FIG +A CGG
Sbjct: 160 KLMLVQVLVDLSVEKGLLDGSFIGFLAWFCGG 65
>TC12082 weakly similar to UP|Q40385 (Q40385) Pistil extensin-like protein,
partial (11%)
Length = 308
Score = 25.4 bits (54), Expect = 1.8
Identities = 12/28 (42%), Positives = 18/28 (63%), Gaps = 2/28 (7%)
Frame = -1
Query: 30 GVVGQGIQAG--KFIGQIAKLCGGGGGG 55
G V G+ AG + +G++ + GGGGGG
Sbjct: 290 GGVAVGVVAGDGEMLGRVVVVGGGGGGG 207
>AV424458
Length = 326
Score = 25.4 bits (54), Expect = 1.8
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -3
Query: 30 GVVGQGIQAGKFIGQIAKLCGGGGG 54
GVVG ++ G+F ++A GGGGG
Sbjct: 264 GVVG--VRGGEFSSEVAVQNGGGGG 196
>BP043858
Length = 546
Score = 25.4 bits (54), Expect = 1.8
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = -2
Query: 42 IGQIAKLCGGGGGGR 56
+GQ+++L GG GGGR
Sbjct: 104 LGQVSELLGGHGGGR 60
>TC15645 similar to UP|ROA3_HUMAN (P51991) Heterogeneous nuclear
ribonucleoprotein A3 (hnRNP A3) (D10S102), partial (5%)
Length = 938
Score = 25.4 bits (54), Expect = 1.8
Identities = 11/22 (50%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Frame = -2
Query: 43 GQIAKLCGGGGGG-RPNFAQAG 63
G++ + GGGGGG RP++A G
Sbjct: 94 GRVTVVSGGGGGGSRPSWAMFG 29
>TC14984 similar to GB|AAM62447.1|21553354|AY085214 glycine-rich RNA binding
protein 7 {Arabidopsis thaliana;} , partial (19%)
Length = 483
Score = 25.4 bits (54), Expect = 1.8
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -1
Query: 50 GGGGGGRPNFAQAGGRKPENLAGAL 74
GG GGG F GG + E+ AGA+
Sbjct: 174 GGRGGGGGGFEGCGGGERESEAGAV 100
>TC16374 similar to UP|Q7LZA6 (Q7LZA6) Protamine II (Fragment), partial
(63%)
Length = 1130
Score = 25.4 bits (54), Expect = 1.8
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = -3
Query: 45 IAKLCGGGGGGRPNFAQAGGRKPENLAGALEKAKSE 80
+ CGGGGGG + G G E+ KSE
Sbjct: 93 VTNTCGGGGGGERERGEVGN-------GGEEEKKSE 7
>AV423672
Length = 281
Score = 25.4 bits (54), Expect = 1.8
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -2
Query: 30 GVVGQGIQAGKFIGQIAKLCGGGGG 54
GVVG ++ G+F ++A GGGGG
Sbjct: 166 GVVG--VRGGEFSSEVAVQNGGGGG 98
>AV409241
Length = 282
Score = 25.4 bits (54), Expect = 1.8
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Frame = -1
Query: 11 VLGSCPGEGKVSLVAAFTPGVV--GQGIQA--GKFIGQIAKLCGGGGGG 55
V+G G+V V F G G+G+ A G +G + GGGGGG
Sbjct: 267 VVGGGADLGEVVDVGIFREGFAESGEGVAAAGGDGVGGGETVAGGGGGG 121
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.315 0.139 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,313,712
Number of Sequences: 28460
Number of extensions: 15536
Number of successful extensions: 268
Number of sequences better than 10.0: 86
Number of HSP's better than 10.0 without gapping: 251
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 263
length of query: 90
length of database: 4,897,600
effective HSP length: 66
effective length of query: 24
effective length of database: 3,019,240
effective search space: 72461760
effective search space used: 72461760
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 48 (23.1 bits)
Medicago: description of AC121239.10