BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC121238.7 - phase: 0
(83 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AV768281 86 9e-19
TC16491 similar to GB|AAM62506.1|21553413|AY085274 VAMP (vesicle... 65 3e-12
TC18926 similar to AAQ63968 (AAQ63968) VAP27-1, partial (36%) 42 2e-05
TC15645 similar to UP|ROA3_HUMAN (P51991) Heterogeneous nuclear ... 27 0.51
BP039566 27 0.66
TC9854 weakly similar to UP|Q9LSN7 (Q9LSN7) Gb|AAC24081.1 (AT3g1... 27 0.66
TC9332 similar to UP|Q9ARG5 (Q9ARG5) Plasma membrane H+ ATPase, ... 27 0.86
TC17661 weakly similar to UP|Q09085 (Q09085) Hydroxyproline-rich... 26 1.1
AV414139 26 1.5
BP067925 26 1.5
CB829188 26 1.5
BP043842 25 1.9
AV408648 25 1.9
TC15414 weakly similar to UP|O81655 (O81655) Senescence-associat... 25 1.9
TC12188 similar to GB|AAF48767.2|22832753|AE003506 CG6474-PA {Dr... 25 1.9
AV415392 25 1.9
TC17073 similar to UP|BAC98948 (BAC98948) AUX1-like auxin influx... 25 1.9
TC16481 similar to UP|O80896 (O80896) At2g32590 protein, partial... 25 1.9
TC16840 homologue to UP|Q9SHZ4 (Q9SHZ4) At2g22120 protein, parti... 25 3.3
TC11126 weakly similar to UP|Q9SBM1 (Q9SBM1) Hydroxyproline-rich... 25 3.3
>AV768281
Length = 575
Score = 86.3 bits (212), Expect = 9e-19
Identities = 40/64 (62%), Positives = 49/64 (76%)
Frame = +3
Query: 1 MQALEEAPPDMQCKDKFLLQSIVARPGATTKDITSDMFYKDSGYEVKESKFRAVCVAPPP 60
MQA +EAPPDMQCKDKFLLQS+ G T KDIT++MF K++G+ V+E K R V VAPP
Sbjct: 324 MQAQKEAPPDMQCKDKFLLQSVKVEDGVTAKDITAEMFNKEAGHIVEECKLRVVYVAPPQ 503
Query: 61 SPNP 64
P+P
Sbjct: 504 PPSP 515
>TC16491 similar to GB|AAM62506.1|21553413|AY085274 VAMP
(vesicle-associated membrane protein)-associated
protein-like {Arabidopsis thaliana;}, partial (31%)
Length = 569
Score = 64.7 bits (156), Expect = 3e-12
Identities = 29/58 (50%), Positives = 35/58 (60%)
Frame = +3
Query: 1 MQALEEAPPDMQCKDKFLLQSIVARPGATTKDITSDMFYKDSGYEVKESKFRAVCVAP 58
+QA E PPDMQCKDKFLLQS + P D+ D F KDSG ++E K R + P
Sbjct: 12 LQAQREFPPDMQCKDKFLLQSTIVNPNTDVDDLPPDTFSKDSGNSIEELKLRVAYITP 185
>TC18926 similar to AAQ63968 (AAQ63968) VAP27-1, partial (36%)
Length = 419
Score = 42.4 bits (98), Expect = 2e-05
Identities = 18/22 (81%), Positives = 20/22 (90%)
Frame = +1
Query: 1 MQALEEAPPDMQCKDKFLLQSI 22
MQA +EAPPDMQCKDKFLLQ +
Sbjct: 346 MQAQKEAPPDMQCKDKFLLQCV 411
>TC15645 similar to UP|ROA3_HUMAN (P51991) Heterogeneous nuclear
ribonucleoprotein A3 (hnRNP A3) (D10S102), partial (5%)
Length = 938
Score = 27.3 bits (59), Expect = 0.51
Identities = 22/73 (30%), Positives = 30/73 (40%), Gaps = 3/73 (4%)
Frame = -2
Query: 4 LEEAPPDMQCKDKFL-LQSIVARPGATTKDITSDMFYKDSGYEVKESKFR--AVCVAPPP 60
LE K KF L + P + + +F SG KF + ++PPP
Sbjct: 763 LEHRAESASTKLKFANLSAFSEYPSMSIPRAQNGLFLFPSGIRSSIGKFTPSSSLISPPP 584
Query: 61 SPNPPLSVHASES 73
SP PP S +S S
Sbjct: 583 SPPPPTSRSSSFS 545
>BP039566
Length = 510
Score = 26.9 bits (58), Expect = 0.66
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +1
Query: 46 VKESKFRAVCVAP-PPSPNPPLSVHASESLDQV 77
+ ES C+ P PP+PNPP+S H E L ++
Sbjct: 91 LSESASVGCCMFPKPPTPNPPMS-HFKEGLTKL 186
>TC9854 weakly similar to UP|Q9LSN7 (Q9LSN7) Gb|AAC24081.1
(AT3g17100/K14A17_22_), partial (43%)
Length = 1108
Score = 26.9 bits (58), Expect = 0.66
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 58 PPPSPNPPLSVHASESLDQVSFYFIF 83
PPP P PP +S+S + F F+F
Sbjct: 16 PPPPPPPPPPPFSSDSSHHLHFRFLF 93
>TC9332 similar to UP|Q9ARG5 (Q9ARG5) Plasma membrane H+ ATPase, partial
(25%)
Length = 960
Score = 26.6 bits (57), Expect = 0.86
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -3
Query: 45 EVKESKFRAVCVAPPPSPNPPLSVHASESL 74
E++E + RA+CV P P P L H+ L
Sbjct: 580 ELQELEDRAMCVVPQPIEPPSLPYHSPSLL 491
>TC17661 weakly similar to UP|Q09085 (Q09085) Hydroxyproline-rich
glycoprotein (HRGP) (Fragment), partial (8%)
Length = 417
Score = 26.2 bits (56), Expect = 1.1
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +1
Query: 55 CVAPPPSPNPPLSVHASES 73
C PPPSP PP H+ S
Sbjct: 22 CKQPPPSPPPPPPCHSLHS 78
>AV414139
Length = 309
Score = 25.8 bits (55), Expect = 1.5
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +3
Query: 64 PPLSVHASESLDQVSFYFIF 83
P L H+ +SLDQ+SF +F
Sbjct: 174 PLLQTHSRQSLDQISFLSLF 233
>BP067925
Length = 353
Score = 25.8 bits (55), Expect = 1.5
Identities = 10/17 (58%), Positives = 12/17 (69%)
Frame = -2
Query: 58 PPPSPNPPLSVHASESL 74
PPPSPNPP ++ A L
Sbjct: 130 PPPSPNPPSNLLAISDL 80
>CB829188
Length = 236
Score = 25.8 bits (55), Expect = 1.5
Identities = 9/17 (52%), Positives = 12/17 (69%)
Frame = +2
Query: 57 APPPSPNPPLSVHASES 73
+PPP P PP +H+S S
Sbjct: 26 SPPPQPPPPPPLHSSSS 76
>BP043842
Length = 490
Score = 25.4 bits (54), Expect = 1.9
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +1
Query: 46 VKESKFRAVCVAPPPSPNPP 65
++ K A C++ PP+P PP
Sbjct: 13 LESKKLAASCISSPPTPPPP 72
>AV408648
Length = 430
Score = 25.4 bits (54), Expect = 1.9
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = +2
Query: 58 PPPSPNPPLSVH 69
PPP P PPLS H
Sbjct: 131 PPPPPPPPLSFH 166
>TC15414 weakly similar to UP|O81655 (O81655) Senescence-associated
protein 5, partial (47%)
Length = 448
Score = 25.4 bits (54), Expect = 1.9
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +2
Query: 52 RAVCVAPPPSPNPPLSVHASES 73
RA C+ PP SP+P S A+ S
Sbjct: 11 RARCLPPPRSPSPVSSARAAAS 76
>TC12188 similar to GB|AAF48767.2|22832753|AE003506 CG6474-PA {Drosophila
melanogaster;} , partial (6%)
Length = 297
Score = 25.4 bits (54), Expect = 1.9
Identities = 13/23 (56%), Positives = 14/23 (60%), Gaps = 4/23 (17%)
Frame = -2
Query: 59 PPSPNP----PLSVHASESLDQV 77
PPSP+P PLSVH LD V
Sbjct: 239 PPSPSPFRPPPLSVHHGHPLDGV 171
>AV415392
Length = 183
Score = 25.4 bits (54), Expect = 1.9
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +3
Query: 58 PPPSPNPPLSVHASESLD 75
PPP N PLS A+E +D
Sbjct: 42 PPPQENSPLSEEAAEIMD 95
>TC17073 similar to UP|BAC98948 (BAC98948) AUX1-like auxin influx carrier
protein, partial (18%)
Length = 579
Score = 25.4 bits (54), Expect = 1.9
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -2
Query: 52 RAVCVAPPPSPNPPLSVHAS 71
+ V +A PP+PNP +VH +
Sbjct: 173 KLVMLAHPPNPNPTTNVHTT 114
>TC16481 similar to UP|O80896 (O80896) At2g32590 protein, partial (19%)
Length = 888
Score = 25.4 bits (54), Expect = 1.9
Identities = 11/23 (47%), Positives = 16/23 (68%), Gaps = 2/23 (8%)
Frame = -3
Query: 53 AVCVAPP--PSPNPPLSVHASES 73
++CV+P PSP PPLS ++S
Sbjct: 271 SLCVSPSYSPSPTPPLSQEGNDS 203
>TC16840 homologue to UP|Q9SHZ4 (Q9SHZ4) At2g22120 protein, partial (39%)
Length = 576
Score = 24.6 bits (52), Expect = 3.3
Identities = 11/24 (45%), Positives = 14/24 (57%)
Frame = -3
Query: 48 ESKFRAVCVAPPPSPNPPLSVHAS 71
E K V PPPSP+P S++ S
Sbjct: 94 EEKKNLSLVDPPPSPSPSPSLYCS 23
>TC11126 weakly similar to UP|Q9SBM1 (Q9SBM1) Hydroxyproline-rich
glycoprotein DZ-HRGP precursor, partial (11%)
Length = 316
Score = 24.6 bits (52), Expect = 3.3
Identities = 10/31 (32%), Positives = 18/31 (57%)
Frame = +1
Query: 48 ESKFRAVCVAPPPSPNPPLSVHASESLDQVS 78
+S F ++ P P P+PP S+ ++ +VS
Sbjct: 37 QSPFASLSHPPSPPPSPPNSLQNETTISRVS 129
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.318 0.133 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,693,656
Number of Sequences: 28460
Number of extensions: 24458
Number of successful extensions: 629
Number of sequences better than 10.0: 108
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of query: 83
length of database: 4,897,600
effective HSP length: 59
effective length of query: 24
effective length of database: 3,218,460
effective search space: 77243040
effective search space used: 77243040
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)
Medicago: description of AC121238.7