TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC121238.3 - phase: 0 /pseudo
         (423 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC9123 similar to UP|O48879 (O48879) Ribosomal protein L22 (Frag...    27  6.4
AV412771                                                               27  8.3
AV408380                                                               27  8.3

>TC9123 similar to UP|O48879 (O48879) Ribosomal protein L22 (Fragment),
           partial (85%)
          Length = 942

 Score = 26.9 bits (58), Expect = 6.4
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = -2

Query: 322 FKCIGFGIFCSHSSITTKESDKDG 345
           F  IG   FC HSS+T    D DG
Sbjct: 692 FSKIGLSSFCFHSSVTRYTCDWDG 621


>AV412771 
          Length = 405

 Score = 26.6 bits (57), Expect = 8.3
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 108 VNKKRCFASAFKCTKTTHDR 127
           VN + C +SAF+C   TH+R
Sbjct: 359 VNMQICSSSAFRCRSRTHNR 300


>AV408380 
          Length = 428

 Score = 26.6 bits (57), Expect = 8.3
 Identities = 10/28 (35%), Positives = 15/28 (52%)
 Frame = -1

Query: 99  RVYHWTTNEVNKKRCFASAFKCTKTTHD 126
           +++ W  NE+N       AF C+  THD
Sbjct: 185 QIFLWCLNELN*TDSGTRAFDCSNNTHD 102


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.372    0.162    0.611 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,264,189
Number of Sequences: 28460
Number of extensions: 101031
Number of successful extensions: 990
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 735
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 248
Number of HSP's gapped (non-prelim): 760
length of query: 423
length of database: 4,897,600
effective HSP length: 93
effective length of query: 330
effective length of database: 2,250,820
effective search space: 742770600
effective search space used: 742770600
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.9 bits)
S2: 56 (26.2 bits)