BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC121237.18 - phase: 0
(387 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CB826729 188 1e-48
BP054131 150 5e-37
TC13318 similar to UP|CAA20314 (CAA20314) SPBC30B4.01c protein (... 41 4e-04
BP034655 40 9e-04
AV415985 40 9e-04
TC8606 similar to UP|AAQ82688 (AAQ82688) Epa4p, partial (7%) 38 0.002
TC17157 similar to UP|CAD27462 (CAD27462) Nucleosome assembly pr... 37 0.006
TC11270 similar to UP|Q9LM88 (Q9LM88) F2D10.15, partial (9%) 37 0.006
TC9642 37 0.007
BI420041 36 0.012
TC20039 similar to UP|O81652 (O81652) Phyb1, partial (14%) 35 0.016
TC19784 weakly similar to UP|Q8S9L3 (Q8S9L3) AT4g38220/F20D10_34... 35 0.016
TC18706 similar to UP|BAD11339 (BAD11339) BRI1-KD interacting pr... 35 0.021
TC15031 weakly similar to UP|Q69107 (Q69107) LAT protein, partia... 35 0.028
TC14970 similar to UP|O24294 (O24294) Legumin (Minor small) prec... 34 0.036
CB828923 34 0.036
BI419972 34 0.047
BP051691 34 0.047
TC11009 similar to GB|AAP21377.1|30102918|BT006569 At1g47970 {Ar... 33 0.062
TC8507 similar to UP|Q8LJS2 (Q8LJS2) Nucleolar histone deacetyla... 33 0.062
>CB826729
Length = 513
Score = 188 bits (477), Expect = 1e-48
Identities = 94/109 (86%), Positives = 102/109 (93%), Gaps = 2/109 (1%)
Frame = +2
Query: 18 KNKQKEELSESMKKLDIEGSSSGS--PNFKRKPVIIIVVGMAGSGKTTLMHRLVTHTHLS 75
K+K+KEEL+E+M KL IEGSSSGS PNFKRKPVII+VVGMAGSGKTT MHRLV HTHLS
Sbjct: 185 KDKEKEELTETMNKLHIEGSSSGSGLPNFKRKPVIILVVGMAGSGKTTFMHRLVCHTHLS 364
Query: 76 NIRGYVMNLDPAVMTLPYASNIDIRDTVKYKEVMKQFNLGPNGGILTSL 124
+RGYV+NLDPAVMTLPYA+NIDIRDTVKYKEVMKQFNLGPNGGILTSL
Sbjct: 365 TLRGYVVNLDPAVMTLPYAANIDIRDTVKYKEVMKQFNLGPNGGILTSL 511
>BP054131
Length = 500
Score = 150 bits (378), Expect = 5e-37
Identities = 82/116 (70%), Positives = 88/116 (75%), Gaps = 11/116 (9%)
Frame = -2
Query: 276 TGAGIEGFFKAVEASAEEYMETYKADLDKRREEKQLLEENRRKENMDKLRREMEKSGGET 335
+G GIE FFK VE SAEEYME YKADLDKRREEKQ LEE RRKE+MDKLR +MEKSGG T
Sbjct: 499 SGTGIEAFFKTVETSAEEYMENYKADLDKRREEKQRLEEGRRKESMDKLRMDMEKSGGGT 320
Query: 336 VVLSTGLKNKE-----------EDEDEEDEEMDDDDNVDFGTYTEDEDAIDEDEDE 380
VVL+TGLK++E EDE EEDEEMDDD YTEDEDAIDEDEDE
Sbjct: 319 VVLNTGLKDQEKAKSKSKMDEDEDEVEEDEEMDDD-----LVYTEDEDAIDEDEDE 167
>TC13318 similar to UP|CAA20314 (CAA20314) SPBC30B4.01c protein (SPBC3D6.14C
protein) (Fragment), partial (15%)
Length = 543
Score = 40.8 bits (94), Expect = 4e-04
Identities = 18/36 (50%), Positives = 28/36 (77%)
Frame = +3
Query: 346 EEDEDEEDEEMDDDDNVDFGTYTEDEDAIDEDEDEE 381
EE++DE++++ DDDD+ D G ED+D D+DE+EE
Sbjct: 273 EEEDDEDEDDDDDDDDDDDGEEEEDDD--DDDEEEE 374
Score = 40.8 bits (94), Expect = 4e-04
Identities = 19/55 (34%), Positives = 34/55 (61%)
Frame = +3
Query: 327 EMEKSGGETVVLSTGLKNKEEDEDEEDEEMDDDDNVDFGTYTEDEDAIDEDEDEE 381
E+ G V + + +++DE+E+DE+ DDDD+ D E+E+ D+D++EE
Sbjct: 207 EIYPDGPPKPVQTDNEEEEDDDEEEDDEDEDDDDDDDDDDDGEEEEDDDDDDEEE 371
Score = 37.4 bits (85), Expect = 0.004
Identities = 14/43 (32%), Positives = 29/43 (66%)
Frame = +3
Query: 342 LKNKEEDEDEEDEEMDDDDNVDFGTYTEDEDAIDEDEDEEVDK 384
++ E+E+++DEE DD+D D +D+D +E++D++ D+
Sbjct: 237 VQTDNEEEEDDDEEEDDEDEDDDDDDDDDDDGEEEEDDDDDDE 365
Score = 31.6 bits (70), Expect = 0.23
Identities = 15/39 (38%), Positives = 22/39 (55%)
Frame = +3
Query: 345 KEEDEDEEDEEMDDDDNVDFGTYTEDEDAIDEDEDEEVD 383
K D E+EE DD++ D +D+D D+D +EE D
Sbjct: 231 KPVQTDNEEEEDDDEEEDDEDEDDDDDDDDDDDGEEEED 347
Score = 27.7 bits (60), Expect = 3.4
Identities = 14/38 (36%), Positives = 23/38 (59%)
Frame = +3
Query: 346 EEDEDEEDEEMDDDDNVDFGTYTEDEDAIDEDEDEEVD 383
++D+D+ +EE DDDD+ E+E+ +E E E D
Sbjct: 312 DDDDDDGEEEEDDDDD------DEEEEGSEEVEVEGKD 407
>BP034655
Length = 517
Score = 39.7 bits (91), Expect = 9e-04
Identities = 16/43 (37%), Positives = 30/43 (69%)
Frame = +1
Query: 341 GLKNKEEDEDEEDEEMDDDDNVDFGTYTEDEDAIDEDEDEEVD 383
GL + +E+E+EE+EE ++++ + E+ED D++EDE+ D
Sbjct: 127 GLSDDDEEEEEEEEEEEEEEEEEEEEEEEEEDEEDDEEDEDED 255
Score = 33.5 bits (75), Expect = 0.062
Identities = 12/39 (30%), Positives = 28/39 (71%)
Frame = +1
Query: 346 EEDEDEEDEEMDDDDNVDFGTYTEDEDAIDEDEDEEVDK 384
++DE+EE+EE ++++ + E+E+ +ED++E+ D+
Sbjct: 136 DDDEEEEEEEEEEEEEEEEEEEEEEEEEDEEDDEEDEDE 252
Score = 27.3 bits (59), Expect = 4.4
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = -2
Query: 4 FFFFFFFFFLVL 15
FFFFFFFFFL +
Sbjct: 177 FFFFFFFFFLFI 142
Score = 26.9 bits (58), Expect = 5.8
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = -2
Query: 4 FFFFFFFFFLVLKE 17
FFFFFFF F+V+ E
Sbjct: 171 FFFFFFFLFIVVGE 130
Score = 26.9 bits (58), Expect = 5.8
Identities = 18/79 (22%), Positives = 36/79 (44%)
Frame = +1
Query: 284 FKAVEASAEEYMETYKADLDKRREEKQLLEENRRKENMDKLRREMEKSGGETVVLSTGLK 343
F AS E+ A + L +++ +E ++ E E+ E +
Sbjct: 49 FATPMASPSEFHRNEIAAAHLTAADFGLSDDDEEEEEEEEEEEEEEEEEEE--------E 204
Query: 344 NKEEDEDEEDEEMDDDDNV 362
+EE+++E+DEE +D+D +
Sbjct: 205 EEEEEDEEDDEEDEDEDYI 261
Score = 26.6 bits (57), Expect = 7.5
Identities = 10/12 (83%), Positives = 10/12 (83%)
Frame = -2
Query: 4 FFFFFFFFFLVL 15
FFFFFFFFF L
Sbjct: 183 FFFFFFFFFFFL 148
>AV415985
Length = 277
Score = 39.7 bits (91), Expect = 9e-04
Identities = 19/52 (36%), Positives = 29/52 (55%)
Frame = +1
Query: 52 IVVGMAGSGKTTLMHRLVTHTHLSNIRGYVMNLDPAVMTLPYASNIDIRDTV 103
+V+G AGSGK+T L H + +V+NLDPA Y +D+R+ +
Sbjct: 112 LVIGPAGSGKSTYCSSLHQHCETTRRTIHVVNLDPAAENFDYPVAMDVRELI 267
>TC8606 similar to UP|AAQ82688 (AAQ82688) Epa4p, partial (7%)
Length = 1008
Score = 38.1 bits (87), Expect = 0.002
Identities = 16/40 (40%), Positives = 29/40 (72%), Gaps = 2/40 (5%)
Frame = -2
Query: 347 EDEDEEDEEMDDDDNVDFGTYTEDEDAIDED--EDEEVDK 384
ED++++D++ +DDD D G E+E+ ++E+ EDEE D+
Sbjct: 407 EDQEDDDDDDEDDDEEDDGGEDEEEEGVEEEDNEDEEEDE 288
Score = 36.6 bits (83), Expect = 0.007
Identities = 18/43 (41%), Positives = 28/43 (64%), Gaps = 2/43 (4%)
Frame = -2
Query: 343 KNKEEDEDEEDEEMDDDDNVDFGTYTEDEDAIDEDED--EEVD 383
+N E++EDE+ E+ +DDD+ D ED+ DE+E+ EE D
Sbjct: 440 ENGEDEEDEDGEDQEDDDDDDEDDDEEDDGGEDEEEEGVEEED 312
Score = 36.6 bits (83), Expect = 0.007
Identities = 16/36 (44%), Positives = 24/36 (66%)
Frame = -2
Query: 346 EEDEDEEDEEMDDDDNVDFGTYTEDEDAIDEDEDEE 381
++D+DE+D+E DD + E+ED DE+EDEE
Sbjct: 392 DDDDDEDDDEEDDGGEDEEEEGVEEEDNEDEEEDEE 285
Score = 34.7 bits (78), Expect = 0.028
Identities = 22/50 (44%), Positives = 27/50 (54%), Gaps = 14/50 (28%)
Frame = -2
Query: 346 EEDEDEEDEEMDDDDNVDF-------------GTYTED-EDAIDEDEDEE 381
EEDED ED+E DDDD+ D G ED ED +++EDEE
Sbjct: 425 EEDEDGEDQEDDDDDDEDDDEEDDGGEDEEEEGVEEEDNEDEEEDEEDEE 276
Score = 34.3 bits (77), Expect = 0.036
Identities = 19/43 (44%), Positives = 24/43 (55%)
Frame = -2
Query: 341 GLKNKEEDEDEEDEEMDDDDNVDFGTYTEDEDAIDEDEDEEVD 383
G +E EDEEDE+ +D ED+D DED+DEE D
Sbjct: 455 GAGPEENGEDEEDEDGEDQ---------EDDDDDDEDDDEEDD 354
Score = 30.8 bits (68), Expect = 0.40
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = -2
Query: 328 MEKSGGETVVLSTGLKNKEEDEDEEDEEMDDDDNVDFGTYTEDEDAIDEDE 378
M + GET S ++ E ED D+E D+DD+ D G + E E+ + ++
Sbjct: 677 MATTKGETKSQSEDKQHDAEGEDGNDDEGDEDDDGD-GPFGEGEEDLSSED 528
Score = 29.6 bits (65), Expect = 0.89
Identities = 15/32 (46%), Positives = 22/32 (67%), Gaps = 3/32 (9%)
Frame = -2
Query: 346 EED---EDEEDEEMDDDDNVDFGTYTEDEDAI 374
EED EDEE+E ++++DN D EDE+A+
Sbjct: 365 EEDDGGEDEEEEGVEEEDNEDEEEDEEDEEAL 270
>TC17157 similar to UP|CAD27462 (CAD27462) Nucleosome assembly protein
1-like protein 3, partial (81%)
Length = 1298
Score = 37.0 bits (84), Expect = 0.006
Identities = 16/35 (45%), Positives = 25/35 (70%)
Frame = +2
Query: 347 EDEDEEDEEMDDDDNVDFGTYTEDEDAIDEDEDEE 381
ED +E+DE+ D+D++ D E+ED D+DED+E
Sbjct: 764 EDIEEDDEDGDEDEDEDDDDDEEEEDDDDDDEDDE 868
Score = 33.9 bits (76), Expect = 0.047
Identities = 14/33 (42%), Positives = 23/33 (69%)
Frame = +2
Query: 348 DEDEEDEEMDDDDNVDFGTYTEDEDAIDEDEDE 380
+ED+ED + D+D++ D ED+D DED++E
Sbjct: 773 EEDDEDGDEDEDEDDDDDEEEEDDDDDDEDDEE 871
Score = 32.0 bits (71), Expect = 0.18
Identities = 17/37 (45%), Positives = 21/37 (55%)
Frame = +2
Query: 347 EDEDEEDEEMDDDDNVDFGTYTEDEDAIDEDEDEEVD 383
E D ED E DD+D EDED D+D++EE D
Sbjct: 749 EQSDFEDIEEDDEDG------DEDEDEDDDDDEEEED 841
>TC11270 similar to UP|Q9LM88 (Q9LM88) F2D10.15, partial (9%)
Length = 735
Score = 37.0 bits (84), Expect = 0.006
Identities = 31/119 (26%), Positives = 52/119 (43%), Gaps = 23/119 (19%)
Frame = +3
Query: 286 AVEASAEEYMETYKADLDKRREEKQLLEENRRKENMDKLRREMEKSGGETVVLSTGLKNK 345
+V A+A E T L KR + + R K + +EK L+ G++ +
Sbjct: 189 SVAAAAREMSGTTSITLMKRMRMRMRMRMMMRGGGRKKKLKLVEK-------LNQGVEEE 347
Query: 346 EEDEDEEDEE--------------MDDDDNVDFGTYTEDEDAI---------DEDEDEE 381
EEDE++E+E+ ++D+ + G E+E+ + DEDEDEE
Sbjct: 348 EEDEEDEEEQTPHPTRGRSRVEHAQEEDEEEENGEEEEEEEEVVVEDEQGNEDEDEDEE 524
Score = 30.8 bits (68), Expect = 0.40
Identities = 31/122 (25%), Positives = 53/122 (43%), Gaps = 7/122 (5%)
Frame = +3
Query: 240 AAASSDQSYTSNLTQSLSLALDEFYSNLRSAGVSAVTGAGIEGFFKAVEASAEEYMETYK 299
AAA+ + S T+++T + +R + G G + K VE + E +
Sbjct: 195 AAAAREMSGTTSITLMKRM-------RMRMRMRMMMRGGGRKKKLKLVEKLNQGVEEEEE 353
Query: 300 ADLDKRREEKQLLEENRRKENMDKLRREMEKSGG-------ETVVLSTGLKNKEEDEDEE 352
D+ EE+Q R + ++ + E E+ E VV+ N++EDEDEE
Sbjct: 354 ---DEEDEEEQTPHPTRGRSRVEHAQEEDEEEENGEEEEEEEEVVVEDEQGNEDEDEDEE 524
Query: 353 DE 354
+E
Sbjct: 525 EE 530
>TC9642
Length = 657
Score = 36.6 bits (83), Expect = 0.007
Identities = 27/96 (28%), Positives = 48/96 (49%), Gaps = 2/96 (2%)
Frame = -3
Query: 282 GFFKAVEASAEEYMETYKADLDKRREEKQLLEENRRKENMDKLRREMEKSG-GETVVLST 340
G ++E + +EY ET K + KR+ + N + E+ G G + ST
Sbjct: 433 GGISSLETNEKEYPET-KTPVAKRKTK------GSTALNTSPVWPELTVKGLGSGALKST 275
Query: 341 GLKNKEEDEDEEDEEMDDDDNVDFGT-YTEDEDAID 375
G N +D+++EDE+ D+D+ + G+ + E E+ D
Sbjct: 274 GAANDTDDDEDEDEDEDEDEASEIGSCWVEVEEVSD 167
>BI420041
Length = 452
Score = 35.8 bits (81), Expect = 0.012
Identities = 16/53 (30%), Positives = 29/53 (54%)
Frame = +2
Query: 335 TVVLSTGLKNKEEDEDEEDEEMDDDDNVDFGTYTEDEDAIDEDEDEEVDKFSF 387
T+V + +E+DE + +E ++D+D Y +DE +E EDE+ D +
Sbjct: 224 TIVQEVSMDEEEDDEFDYEEPLNDEDEDGDEYYDDDEQEEEEFEDEDEDSVPY 382
>TC20039 similar to UP|O81652 (O81652) Phyb1, partial (14%)
Length = 614
Score = 35.4 bits (80), Expect = 0.016
Identities = 20/66 (30%), Positives = 32/66 (48%)
Frame = +1
Query: 298 YKADLDKRREEKQLLEENRRKENMDKLRREMEKSGGETVVLSTGLKNKEEDEDEEDEEMD 357
YK +K + EK+ E++RRK N K ++++ K K D ++D
Sbjct: 82 YKRQKEKEQLEKRQQEQDRRKRNRSKSDDDLDEFQESQ---ERRQKGKRATISPSDHKID 252
Query: 358 DDDNVD 363
DDDN+D
Sbjct: 253 DDDNID 270
>TC19784 weakly similar to UP|Q8S9L3 (Q8S9L3) AT4g38220/F20D10_340, partial
(21%)
Length = 415
Score = 35.4 bits (80), Expect = 0.016
Identities = 13/23 (56%), Positives = 19/23 (82%)
Frame = -2
Query: 2 ECFFFFFFFFFLVLKEKNKQKEE 24
+CFFFFFFFFF ++ N+++EE
Sbjct: 141 DCFFFFFFFFFYC*RDCNEEEEE 73
Score = 26.6 bits (57), Expect = 7.5
Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 4/31 (12%)
Frame = -2
Query: 4 FFFFFFFFF----LVLKEKNKQKEELSESMK 30
FFFFFFFF+ +E+ ++KE+ S +++
Sbjct: 132 FFFFFFFFYC*RDCNEEEEEEEKEDASSAIQ 40
>TC18706 similar to UP|BAD11339 (BAD11339) BRI1-KD interacting protein 111
(Fragment), partial (16%)
Length = 640
Score = 35.0 bits (79), Expect = 0.021
Identities = 16/43 (37%), Positives = 29/43 (67%)
Frame = +3
Query: 342 LKNKEEDEDEEDEEMDDDDNVDFGTYTEDEDAIDEDEDEEVDK 384
L++ +E D+E E DDD+++ G + +DA DE+E+++V K
Sbjct: 12 LQSGDEGSDDEVEGSDDDNDIQIG---DVDDASDEEEEDQVSK 131
>TC15031 weakly similar to UP|Q69107 (Q69107) LAT protein, partial (27%)
Length = 997
Score = 34.7 bits (78), Expect = 0.028
Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 13/92 (14%)
Frame = -1
Query: 303 DKRREEKQLLEENRRKENMDKLRREMEKSGGETVVLSTGLKNKEEDEDEEDEEMDDD--- 359
++ R+E++ EE + ++++D + GGE G + D EEDEE +D+
Sbjct: 781 EEERDEERGFEEAQIQDDVDSAEIGLIGDGGEVPAAEDG*PEEFGDGPEEDEEDEDETDG 602
Query: 360 ----------DNVDFGTYTEDEDAIDEDEDEE 381
+ F T EDE + ED+E
Sbjct: 601 PEAVEALEIGEGFGFETKVEDETEGENREDDE 506
>TC14970 similar to UP|O24294 (O24294) Legumin (Minor small) precursor,
partial (51%)
Length = 1566
Score = 34.3 bits (77), Expect = 0.036
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 10/76 (13%)
Frame = +1
Query: 316 RRKENMDKLRREMEKSGGETVVLSTGLKNKEEDEDEEDEEMDDDDNVDFGTYTED----- 370
++ ++ D RR++ K G+ + + ++ +EDEDEEDE D+D G ++
Sbjct: 418 KQLQSPDDQRRQIVKVEGDDLSFISP-ESADEDEDEEDE---DEDQEQHGRHSRPSGRRT 585
Query: 371 -----EDAIDEDEDEE 381
E+ DEDEDEE
Sbjct: 586 RRPSREEDEDEDEDEE 633
Score = 27.3 bits (59), Expect = 4.4
Identities = 26/110 (23%), Positives = 44/110 (39%), Gaps = 16/110 (14%)
Frame = +1
Query: 291 AEEYMETYKADLDKRREEKQLLEENRRKENMDKLRREMEKSGGETVVLSTGLK------N 344
A E+ ET ++ RRE R+ E E+ G +++ G + N
Sbjct: 235 AIEHPETQQSQRQPRRESP-----GGRRHGQHHQESEQEEEEGGSILSGFGAEFLQQVFN 399
Query: 345 KEEDEDEEDEEMDD----------DDNVDFGTYTEDEDAIDEDEDEEVDK 384
+ D ++ + DD DD + DED +EDEDE+ ++
Sbjct: 400 IDHDTAKQLQSPDDQRRQIVKVEGDDLSFISPESADEDEDEEDEDEDQEQ 549
>CB828923
Length = 488
Score = 34.3 bits (77), Expect = 0.036
Identities = 14/39 (35%), Positives = 22/39 (55%)
Frame = -3
Query: 349 EDEEDEEMDDDDNVDFGTYTEDEDAIDEDEDEEVDKFSF 387
++EE + VD + DED ++ EDE VD++SF
Sbjct: 387 KEEEKHRS*ESTGVDVNANSNDEDGVESKEDESVDEYSF 271
>BI419972
Length = 498
Score = 33.9 bits (76), Expect = 0.047
Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Frame = +1
Query: 346 EEDEDEEDEEMDDDDNVDFGTYTEDE-DAIDEDEDEEVD 383
+ED D+ED++ DDDD+ + Y+ DE + D ++D E +
Sbjct: 361 DEDGDDEDDDADDDDDDEGEDYSGDEGEEADPEDDPEAN 477
Score = 30.0 bits (66), Expect = 0.68
Identities = 15/42 (35%), Positives = 24/42 (56%)
Frame = +1
Query: 342 LKNKEEDEDEEDEEMDDDDNVDFGTYTEDEDAIDEDEDEEVD 383
L NK+ + +++++ D+DD+ D E ED DE EE D
Sbjct: 331 LANKDSETEDDEDGDDEDDDADDDDDDEGED-YSGDEGEEAD 453
Score = 28.5 bits (62), Expect = 2.0
Identities = 12/37 (32%), Positives = 24/37 (64%)
Frame = +1
Query: 344 NKEEDEDEEDEEMDDDDNVDFGTYTEDEDAIDEDEDE 380
+++ D++++D + DDDD + + E E+A ED+ E
Sbjct: 361 DEDGDDEDDDADDDDDDEGEDYSGDEGEEADPEDDPE 471
>BP051691
Length = 428
Score = 33.9 bits (76), Expect = 0.047
Identities = 20/56 (35%), Positives = 33/56 (58%)
Frame = -1
Query: 327 EMEKSGGETVVLSTGLKNKEEDEDEEDEEMDDDDNVDFGTYTEDEDAIDEDEDEEV 382
E+E G T++ + + +E + EDE+ D+DD +D EDED EDED+++
Sbjct: 281 EIEDLSG-TILFIGRVLHPDEVDTLEDEDEDEDDTLD-----EDEDDPVEDEDDDI 132
>TC11009 similar to GB|AAP21377.1|30102918|BT006569 At1g47970 {Arabidopsis
thaliana;}, partial (44%)
Length = 700
Score = 33.5 bits (75), Expect = 0.062
Identities = 15/38 (39%), Positives = 28/38 (73%)
Frame = +2
Query: 344 NKEEDEDEEDEEMDDDDNVDFGTYTEDEDAIDEDEDEE 381
++++D+D ED++ D+DD+ D +D+D +EDE+EE
Sbjct: 26 DEDDDDDGEDDDGDEDDDDDAPGGGDDDDD-EEDEEEE 136
Score = 30.8 bits (68), Expect = 0.40
Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 9/69 (13%)
Frame = +2
Query: 322 DKLRREMEKSGGETVVLSTGLKNKEEDEDEEDEEMDDDDNVDFGT---------YTEDED 372
D + E+ GG G ++D+D++D++ ++++ D GT EDE+
Sbjct: 107 DDDEEDEEEEGGVEGGRGGGGDPDDDDDDDDDDDEEEEEEEDLGTEYLVRRTVAAAEDEE 286
Query: 373 AIDEDEDEE 381
A + E EE
Sbjct: 287 ASSDFEPEE 313
Score = 30.8 bits (68), Expect = 0.40
Identities = 15/41 (36%), Positives = 26/41 (62%), Gaps = 2/41 (4%)
Frame = +2
Query: 346 EEDEDEEDEEMDD--DDNVDFGTYTEDEDAIDEDEDEEVDK 384
++D+DEEDEE + + G +D+D D+D+DEE ++
Sbjct: 101 DDDDDEEDEEEEGGVEGGRGGGGDPDDDDDDDDDDDEEEEE 223
Score = 28.9 bits (63), Expect = 1.5
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 11/54 (20%)
Frame = +2
Query: 341 GLKNKEEDEDEEDE-----------EMDDDDNVDFGTYTEDEDAIDEDEDEEVD 383
G + +++EDEE+E + DDDD +D+D DE+E+EE D
Sbjct: 95 GGDDDDDEEDEEEEGGVEGGRGGGGDPDDDD--------DDDDDDDEEEEEEED 232
>TC8507 similar to UP|Q8LJS2 (Q8LJS2) Nucleolar histone deacetylase
HD2-P39, partial (40%)
Length = 620
Score = 33.5 bits (75), Expect = 0.062
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
Frame = +3
Query: 344 NKEEDEDEEDEEMDDDDNV--DFGTYTEDEDAIDEDEDEEVDK 384
++E+D D+ED+E DD D D + +++ D+ D DE+ V K
Sbjct: 3 DEEDDSDDEDDEDDDSDEEMDDADSDSDESDSDDTDEETPVKK 131
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.316 0.133 0.367
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,993,240
Number of Sequences: 28460
Number of extensions: 60746
Number of successful extensions: 2651
Number of sequences better than 10.0: 196
Number of HSP's better than 10.0 without gapping: 1187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1912
length of query: 387
length of database: 4,897,600
effective HSP length: 92
effective length of query: 295
effective length of database: 2,279,280
effective search space: 672387600
effective search space used: 672387600
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)
Medicago: description of AC121237.18