TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC121234.2 + phase: 0 
         (1118 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP056703                                                              114  9e-26
TC17036 similar to UP|Q8VZD7 (Q8VZD7) AT3g28480/MFJ20_16, partia...    30  1.6
AW720445                                                               28  8.0
CB828026                                                               28  8.0
AV770499                                                               28  8.0

>BP056703 
          Length = 386

 Score =  114 bits (285), Expect = 9e-26
 Identities = 50/57 (87%), Positives = 53/57 (92%)
 Frame = -3

Query: 1062 VHLDHKHMGLGGDDSWSPCVHDQYLVPPVPYSFSVRLSPVTPATSGHDIYRSQLQNS 1118
            +HLDHKHMGLGGDDSWSPCV DQYL+PPVPYSFSVRL PV P+TSGHDIYRSQL NS
Sbjct: 384  IHLDHKHMGLGGDDSWSPCVPDQYLIPPVPYSFSVRLCPVMPSTSGHDIYRSQLLNS 214


>TC17036 similar to UP|Q8VZD7 (Q8VZD7) AT3g28480/MFJ20_16, partial (21%)
          Length = 697

 Score = 30.4 bits (67), Expect = 1.6
 Identities = 19/56 (33%), Positives = 26/56 (45%), Gaps = 4/56 (7%)
 Frame = +2

Query: 1057 GDNIEVHLDHKHMGLGGDDSWSPCVHDQYLVPP----VPYSFSVRLSPVTPATSGH 1108
            G+ I  H + K +    D+SWS C H  Y V P        FS+ L+  T + S H
Sbjct: 14   GETIFPHAESK-LSQPKDESWSECAHKGYAVKPRKGDALLFFSLHLNATTDSNSLH 178


>AW720445 
          Length = 500

 Score = 28.1 bits (61), Expect = 8.0
 Identities = 10/22 (45%), Positives = 17/22 (76%)
 Frame = -3

Query: 939 KPNADLPPLPRVGIEMNLEKSL 960
           +PN  +P +P+V +EMNL+K +
Sbjct: 291 RPNKQVPAVPKV*LEMNLKKKI 226


>CB828026 
          Length = 542

 Score = 28.1 bits (61), Expect = 8.0
 Identities = 17/55 (30%), Positives = 22/55 (39%)
 Frame = -1

Query: 85  WVKDLPFVKSLSGYWKFFLASNPCNVPAKFHDSEFQDSEWSTLPVPSNWQLHGFD 139
           W K  P  +       F LAS PC  P      + + +  S L  PS+  L G D
Sbjct: 311 WTKTQPVFEVTVHS**FHLASQPCQ*PCCIQVQDLEGTSSSHLSFPSSLSLQGCD 147


>AV770499 
          Length = 491

 Score = 28.1 bits (61), Expect = 8.0
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = +2

Query: 67  SAVWKDDAVNGALESAAFWVKDLPFVKSLSGYWKFFLASNPCNVPAKFHD 116
           S  WK+ A +G+L+++ F      F+  ++GY K    + P N+   FHD
Sbjct: 302 SGNWKERAFSGSLQASPFLEMLYNFIHGVNGYGK----TEPINI-LGFHD 436


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.318    0.136    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,492,366
Number of Sequences: 28460
Number of extensions: 402387
Number of successful extensions: 1829
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1827
length of query: 1118
length of database: 4,897,600
effective HSP length: 100
effective length of query: 1018
effective length of database: 2,051,600
effective search space: 2088528800
effective search space used: 2088528800
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)