TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC121234.11 - phase: 0 /pseudo
         (92 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC18204 similar to UP|Q9XFI5 (Q9XFI5) NADPH:quinone oxidoreducta...    58  3e-10
TC19543 similar to UP|Q9LK88 (Q9LK88) NADPH:quinone oxidoreducta...    49  1e-07
AV421623                                                               35  0.002
TC19755 similar to UP|XT33_ARATH (Q8LC45) Probable xyloglucan en...    28  0.27
AV427784                                                               27  0.61
TC16663                                                                26  1.4
TC14097 homologue to UP|GCSP_PEA (P26969) Glycine dehydrogenase ...    25  3.0
TC18063 similar to UP|LON2_ARATH (P93655) Lon protease homolog 2...    24  3.9
TC19263 similar to UP|Q8L8A0 (Q8L8A0) Type IIB calcium ATPase MC...    24  3.9
TC16955 UP|Q40206 (Q40206) RAB1X, complete                             23  8.8

>TC18204 similar to UP|Q9XFI5 (Q9XFI5) NADPH:quinone oxidoreductase,
          partial (67%)
          Length = 647

 Score = 57.8 bits (138), Expect = 3e-10
 Identities = 27/33 (81%), Positives = 29/33 (87%)
 Frame = +2

Query: 59 EGTYPPLVEAFRHKILQADSVLFASPEYNYSVT 91
          +G YPP VEAFR KIL ADS+LFASPEYNYSVT
Sbjct: 5  KGRYPPEVEAFRSKILLADSILFASPEYNYSVT 103


>TC19543 similar to UP|Q9LK88 (Q9LK88) NADPH:quinone oxidoreductase,
          partial (67%)
          Length = 568

 Score = 48.9 bits (115), Expect = 1e-07
 Identities = 23/31 (74%), Positives = 25/31 (80%)
 Frame = +2

Query: 60 GTYPPLVEAFRHKILQADSVLFASPEYNYSV 90
          G YP  VEAFR KI+ ADS+LFASPE NYSV
Sbjct: 2  GAYPAEVEAFRQKIIGADSILFASPENNYSV 94


>AV421623 
          Length = 244

 Score = 35.4 bits (80), Expect = 0.002
 Identities = 19/24 (79%), Positives = 22/24 (91%)
 Frame = +1

Query: 1   MATAVIKVAALSGSIRKVSYHSGL 24
           MATA IKVAALSGS+RK SY++GL
Sbjct: 175 MATA-IKVAALSGSLRKASYNTGL 243


>TC19755 similar to UP|XT33_ARATH (Q8LC45) Probable xyloglucan
           endotransglucosylase/hydrolase protein 33 precursor
           (At-XTH33) (XTH-33) , partial (39%)
          Length = 431

 Score = 28.1 bits (61), Expect = 0.27
 Identities = 14/43 (32%), Positives = 22/43 (50%)
 Frame = +2

Query: 1   MATAVIKVAALSGSIRKVSYHSGLIRAAIELSKGATEGIEIEF 43
           MAT  +   + SG + +  Y  G   AAI+L  G + G+ + F
Sbjct: 98  MATLALDKISGSGLVSQSRYSYGFFSAAIKLPAGLSSGVVVAF 226


>AV427784 
          Length = 175

 Score = 26.9 bits (58), Expect = 0.61
 Identities = 13/16 (81%), Positives = 14/16 (87%)
 Frame = +2

Query: 5   VIKVAALSGSIRKVSY 20
           VI VAALSGS+RK SY
Sbjct: 128 VINVAALSGSLRKGSY 175


>TC16663 
          Length = 601

 Score = 25.8 bits (55), Expect = 1.4
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -1

Query: 58  NEGTYPPLVEAFRHKILQ 75
           N+GT PP V AF+H +L+
Sbjct: 529 NQGT*PPNVAAFKHALLR 476


>TC14097 homologue to UP|GCSP_PEA (P26969) Glycine dehydrogenase
           [decarboxylating], mitochondrial precursor  (Glycine
           decarboxylase) (Glycine cleavage system P-protein) ,
           partial (97%)
          Length = 3660

 Score = 24.6 bits (52), Expect = 3.0
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
 Frame = +2

Query: 30  ELSKGATEGI---EIEFIDISTLPMYNTDLENEGT 61
           E+S+G  E +   +    D++ LPM N  L +EGT
Sbjct: 716 EISQGRLESLLNYQTMITDLTGLPMSNASLLDEGT 820


>TC18063 similar to UP|LON2_ARATH (P93655) Lon protease homolog 2,
           mitochondrial precursor  , partial (9%)
          Length = 492

 Score = 24.3 bits (51), Expect = 3.9
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = +3

Query: 8   VAALSGSIRKVSYHSGLIRAAIELSKGATEGIEIEFID 45
           +AA    ++ + + S   R   EL+    EG+++ F+D
Sbjct: 93  IAARRSGVKTIVFPSANRRDYDELAPNVKEGLDVHFVD 206


>TC19263 similar to UP|Q8L8A0 (Q8L8A0) Type IIB calcium ATPase MCA5, partial
           (17%)
          Length = 536

 Score = 24.3 bits (51), Expect = 3.9
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 15  IRKVSYHSGLIRAAIELSKGATEGI 39
           ++K  +H G+   A +LS   TEGI
Sbjct: 339 VKKFKFHGGVNGVAKKLSTSVTEGI 413


>TC16955 UP|Q40206 (Q40206) RAB1X, complete
          Length = 1104

 Score = 23.1 bits (48), Expect = 8.8
 Identities = 10/31 (32%), Positives = 18/31 (57%)
 Frame = -2

Query: 44  IDISTLPMYNTDLENEGTYPPLVEAFRHKIL 74
           + ISTLP++ ++  + G    LV A ++  L
Sbjct: 746 LSISTLPLFRSNNHHVGMLEVLVSASKYSFL 654


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.316    0.133    0.358 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,112,583
Number of Sequences: 28460
Number of extensions: 9912
Number of successful extensions: 45
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of query: 92
length of database: 4,897,600
effective HSP length: 68
effective length of query: 24
effective length of database: 2,962,320
effective search space: 71095680
effective search space used: 71095680
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)