TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC119417.4 - phase: 0 /pseudo
         (459 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC15272 weakly similar to UP|Q9FUJ0 (Q9FUJ0) Cytokinin oxidase, ...    76  1e-14
BP031101                                                               42  3e-04
AV418280                                                               30  0.64
TC11719                                                                29  1.4
BP030995                                                               29  1.4
TC19186 homologue to emb|Z18289.1|PPC16SRNA Palmaria palmata Chl...    27  5.4
TC10242 weakly similar to UP|O00561 (O00561) Calcium/calmodulin-...    27  7.1
TC19257 UP|Q9BDE4 (Q9BDE4) Selenoprotein P-like protein (Fragmen...    27  7.1
TC12902                                                                27  9.2

>TC15272 weakly similar to UP|Q9FUJ0 (Q9FUJ0) Cytokinin oxidase, partial
           (14%)
          Length = 524

 Score = 75.9 bits (185), Expect = 1e-14
 Identities = 31/73 (42%), Positives = 52/73 (70%)
 Frame = +3

Query: 381 SSSGPDELEHILSQNKRILEYCERAHLGVKQYLPHYTTQEEWQTHYGHKWEIFKQRKSIY 440
           +++G DE++   +QN+ IL++C+ A + +K+YL    T EEW  H+G KW++++ RK+ +
Sbjct: 117 AANGGDEVQKYQAQNQEILQFCKGAGIKIKEYLTGNKTHEEWVEHFGPKWKLWEDRKAEF 296

Query: 441 DPLAILAPGQGIF 453
           DP  IL+PG GIF
Sbjct: 297 DPKRILSPGPGIF 335


>BP031101 
          Length = 472

 Score = 41.6 bits (96), Expect = 3e-04
 Identities = 29/74 (39%), Positives = 39/74 (52%)
 Frame = +3

Query: 80  ENFLMWMCQEVNYG*RFCMRH*SMVWHQDLGQIICI*QLVVLYPMLVLVVRLLGMVHRSV 139
           E+  M M  E N+G   C+   SM  H  LG I CI*    L+PML  V R   MV +S 
Sbjct: 207 ESSTMLMLVESNFGLMCCVPPWSMDLHLFLGLITCI*LWEGLFPMLA*VARHSNMVLKSQ 386

Query: 140 MFRRWRLLQSEEQN 153
           +F +W +   E++N
Sbjct: 387 VFLKW-MSSPEKEN 425


>AV418280 
          Length = 398

 Score = 30.4 bits (67), Expect = 0.64
 Identities = 23/80 (28%), Positives = 36/80 (44%), Gaps = 5/80 (6%)
 Frame = -2

Query: 309 SKGLWDVPHPWLNLFI--PKSKIHNFAEVVFGNIVKETSNGPVLIY-PVHKSKWDKRTSV 365
           S G+W   H WL + +  P S + NFA+       K    G + I+     S W +R S+
Sbjct: 328 SMGVWQALHRWLGISVALPASTLANFAQFSITARNKNQRLGELAIWIATVWSLWIQRNSI 149

Query: 366 VIPDE--DIFYLVGFLASSS 383
           +  +   D  YL+  + S S
Sbjct: 148 IFRNNALDHSYLLDLIQSRS 89


>TC11719 
          Length = 376

 Score = 29.3 bits (64), Expect = 1.4
 Identities = 11/51 (21%), Positives = 27/51 (52%)
 Frame = -2

Query: 388 LEHILSQNKRILEYCERAHLGVKQYLPHYTTQEEWQTHYGHKWEIFKQRKS 438
           ++H+L++N R+   C+  H+ +K+        ++W+       +++KQ  S
Sbjct: 303 VKHVLTENARV*NLCQPEHIYLKKKQKQTKQMQDWKKITMQNLKVWKQNAS 151


>BP030995 
          Length = 458

 Score = 29.3 bits (64), Expect = 1.4
 Identities = 11/51 (21%), Positives = 27/51 (52%)
 Frame = +3

Query: 388 LEHILSQNKRILEYCERAHLGVKQYLPHYTTQEEWQTHYGHKWEIFKQRKS 438
           ++H+L++N R+   C+  H+ +K+        ++W+       +++KQ  S
Sbjct: 72  VKHVLTENARV*NLCQPEHIYLKKKQKQTKQMQDWKKITMQNLKVWKQNAS 224


>TC19186 homologue to emb|Z18289.1|PPC16SRNA Palmaria palmata Chloroplast
           for 16SrRNA gene, partial (10%)
          Length = 563

 Score = 27.3 bits (59), Expect = 5.4
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 372 IFYLVGFLASSSGPDELEHILSQNKR 397
           I+YL+      S P EL+H+ SQ KR
Sbjct: 107 IYYLLNL*TRKSKPGELKHLSSQRKR 184


>TC10242 weakly similar to UP|O00561 (O00561) Calcium/calmodulin-dependent
           protein kinase isoform A (Fragment), partial (6%)
          Length = 522

 Score = 26.9 bits (58), Expect = 7.1
 Identities = 22/79 (27%), Positives = 37/79 (45%)
 Frame = +2

Query: 259 YFNMEETLEVNQDIQKHLSHLNFIPSTLFQTEVTYVDFLDRVHISEVKLRSKGLWDVPHP 318
           Y+  EET ++   I +  S    +   L  T+  ++DF+  +     K R      + HP
Sbjct: 14  YYANEETDQLEYIIPEESS----LEQHLQVTDAMFIDFVKYLLNINPKRRPTTKQALKHP 181

Query: 319 WLNLFIPKSKIHNFAEVVF 337
           WL+  + KSK H F+  +F
Sbjct: 182 WLS-HVYKSK*HCFSGGMF 235


>TC19257 UP|Q9BDE4 (Q9BDE4) Selenoprotein P-like protein (Fragment), partial
           (9%)
          Length = 525

 Score = 26.9 bits (58), Expect = 7.1
 Identities = 17/66 (25%), Positives = 32/66 (47%), Gaps = 2/66 (3%)
 Frame = -2

Query: 104 VWHQDLGQIIC-I*QLVVLYPMLVLVVRLLGMVHRSVMFRRWRLLQ-SEEQNGELFYSVL 161
           +WH  LG ++C +     L P+ +L++ +L     S+   +W L Q +  +     +S +
Sbjct: 404 IWHLQLGLLLCFLLDTTTLIPIPILILLML-----SL*LTQWHLQQCTNNKETNFVFSFI 240

Query: 162 GGLGQF 167
             L QF
Sbjct: 239 ACLDQF 222


>TC12902 
          Length = 714

 Score = 26.6 bits (57), Expect = 9.2
 Identities = 8/12 (66%), Positives = 9/12 (74%)
 Frame = -1

Query: 414 PHYTTQEEWQTH 425
           PHYT Q +W TH
Sbjct: 123 PHYTPQHQWSTH 88


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.336    0.148    0.478 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,600,052
Number of Sequences: 28460
Number of extensions: 125840
Number of successful extensions: 898
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 898
length of query: 459
length of database: 4,897,600
effective HSP length: 93
effective length of query: 366
effective length of database: 2,250,820
effective search space: 823800120
effective search space used: 823800120
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 57 (26.6 bits)