TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC119417.1 + phase: 0 /pseudo
         (1553 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP066094                                                               98  9e-21
BP084332                                                               81  1e-15

>BP066094 
          Length = 532

 Score = 98.2 bits (243), Expect = 9e-21
 Identities = 65/143 (45%), Positives = 89/143 (61%)
 Frame = +1

Query: 1132 GSNQVTSILRN*SWHNIISNGCQKCLS*WCH*RRSVC*TTSWV*GS*AS*PCL*T*EITI 1191
            GS Q T ++ + S HN  S+ C +CLS W H R S+C +T         *P     EI++
Sbjct: 94   GSYQTTDLILSESQHNSSSDEC*ECLSKWLHLRGSLCSSTPRFXR*EEL*PYFQIEEISL 273

Query: 1192 WLETSSQSLV**TK*FLN*K*F*KRTS*HNTLQKDS*KRYFDCANIC**YNIWFY*CISL 1251
            W E SSQS+V* T+   + K*  K  S +N+L ++  + Y +CAN+C**Y IW  * IS+
Sbjct: 274  WSEASSQSMV*ETQLIPSGK*VXKG*SRYNSLLQNLQR*YINCANLC**YYIWIC*SISM 453

Query: 1252 QRIL*VNAG*I*NEYDGRIEVLS 1274
            QR+ * +AG*I*N YDGR ++LS
Sbjct: 454  QRVF*DDAG*I*NAYDGRTQILS 522


>BP084332 
          Length = 368

 Score = 81.3 bits (199), Expect = 1e-15
 Identities = 49/109 (44%), Positives = 66/109 (59%)
 Frame = +1

Query: 1435 NYCYVYSRSRIHFSCKLLHTTTLDETSIGRLSD*CQQYSHLL**YCCYLFVKESNSTFKI 1494
            N+C +Y R RI+ S  + H+  LDETS G LS+  +QY +LL**+CC     ES  TFK 
Sbjct: 37   NHCTIYCRGRIYLSSNMQHSDALDETSAGGLSNP*EQYPNLL**HCCNFIE*ESYLTFKG 216

Query: 1495 QAY*NQTPFYQRLCSKRDFRYTIH*Y*TSMG*YIYKTFIC*KI*FY*EK 1543
            +A+* +   Y RLC++      + *Y* SMG Y+YK      I*F+ EK
Sbjct: 217  KAH*GKVSLY*RLCTEGRTSSEVC*Y*PSMGRYLYKALSRG*I*FHSEK 363


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.386    0.173    0.716 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,139,099
Number of Sequences: 28460
Number of extensions: 334468
Number of successful extensions: 6164
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1698
Number of HSP's successfully gapped in prelim test: 160
Number of HSP's that attempted gapping in prelim test: 4333
Number of HSP's gapped (non-prelim): 2122
length of query: 1553
length of database: 4,897,600
effective HSP length: 102
effective length of query: 1451
effective length of database: 1,994,680
effective search space: 2894280680
effective search space used: 2894280680
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 13 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 34 (21.5 bits)
S2: 62 (28.5 bits)