TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC119414.8 + phase: 0 /pseudo
         (427 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AV780009                                                               37  0.006
TC19389 weakly similar to UP|POLX_TOBAC (P10978) Retrovirus-rela...    34  0.040
BP084332                                                               30  0.99
TC15621 similar to UP|O81340 (O81340) 26S proteasome regulatory ...    27  8.4

>AV780009 
          Length = 529

 Score = 37.0 bits (84), Expect = 0.006
 Identities = 18/49 (36%), Positives = 28/49 (56%)
 Frame = -1

Query: 288 TEKSTSWYVYMVGNGAISWSSMKKPIVTLSTTEAEFVAAASCSC*GIWL 336
           T +S + Y   +G   ISW + K+  V+ S++EAE+ A A+  C   WL
Sbjct: 406 TRRSVTGYSIFLGTSLISWRTKKQTTVSRSSSEAEYRALAATVCEVQWL 260


>TC19389 weakly similar to UP|POLX_TOBAC (P10978) Retrovirus-related Pol
           polyprotein from transposon TNT 1-94 [Contains: Protease
           ; Reverse transcriptase ; Endonuclease] , partial (6%)
          Length = 498

 Score = 34.3 bits (77), Expect = 0.040
 Identities = 15/36 (41%), Positives = 22/36 (60%)
 Frame = +3

Query: 302 GAISWSSMKKPIVTLSTTEAEFVAAASCSC*GIWLR 337
           GA++W S  +  V LST EAEF+AA       +W++
Sbjct: 21  GAVAWPSRLQKCVALSTAEAEFIAATEACHELLWMK 128


>BP084332 
          Length = 368

 Score = 29.6 bits (65), Expect = 0.99
 Identities = 11/24 (45%), Positives = 18/24 (74%)
 Frame = +2

Query: 314 VTLSTTEAEFVAAASCSC*GIWLR 337
           + LST EAE+++AA CS   +W++
Sbjct: 41  IALSTAEAEYISAAICSTQMLWMK 112


>TC15621 similar to UP|O81340 (O81340) 26S proteasome regulatory subunit
           S5A, partial (80%)
          Length = 1109

 Score = 26.6 bits (57), Expect = 8.4
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 305 SWSSMKKPIVTLSTTEAEFVAAASC 329
           SW  +  P   L+ + A F+AAASC
Sbjct: 924 SWELVSPPFSWLAASSAAFLAAASC 850


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.372    0.166    0.671 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,256,615
Number of Sequences: 28460
Number of extensions: 119853
Number of successful extensions: 1087
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 803
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 281
Number of HSP's gapped (non-prelim): 825
length of query: 427
length of database: 4,897,600
effective HSP length: 93
effective length of query: 334
effective length of database: 2,250,820
effective search space: 751773880
effective search space used: 751773880
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.9 bits)
S2: 56 (26.2 bits)