BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC119414.2 + phase: 0
(636 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC17973 similar to UP|Q9LIM6 (Q9LIM6) Gb|AAF16571.1, partial (24%) 378 e-105
BP053377 151 4e-37
AW719754 139 2e-33
AV777782 132 1e-31
BP038948 108 3e-24
BE122477 107 6e-24
AV409178 103 6e-23
BP061165 95 4e-20
AV766903 90 1e-18
BI420384 89 3e-18
TC11048 similar to UP|O04343 (O04343) At2g30520 protein, partial... 89 3e-18
TC18871 weakly similar to UP|O04344 (O04344) At2g30510 protein, ... 78 4e-15
AV407064 75 2e-14
AV415011 74 5e-14
TC12833 similar to UP|Q9LYW0 (Q9LYW0) Photoreceptor-interacting ... 47 6e-13
BP042810 62 4e-10
AV409560 57 9e-09
AV417132 52 3e-07
BP077118 43 2e-04
TC18095 similar to UP|Q94A73 (Q94A73) AT5g66560/K1F13_23, partia... 42 4e-04
>TC17973 similar to UP|Q9LIM6 (Q9LIM6) Gb|AAF16571.1, partial (24%)
Length = 919
Score = 378 bits (970), Expect = e-105
Identities = 189/215 (87%), Positives = 202/215 (93%), Gaps = 1/215 (0%)
Frame = +3
Query: 1 MKFMKLGSRPDTFYTSEAIRTISSEVSSDLIIQVRGSRYLLHKFPLLSKCLCLQRLCSES 60
MKFMKLGSRPDTFYT+EAIR++SSEV SDLIIQVRG+RYLLHKFPLLSKCL LQ+LCSES
Sbjct: 279 MKFMKLGSRPDTFYTAEAIRSVSSEVCSDLIIQVRGTRYLLHKFPLLSKCLRLQKLCSES 458
Query: 61 PPDSSHHQIVQLPDFPGGVEAFELCAKFCYGIQITLSPYNIVAARCAAEYLQMTEEVEKG 120
P DSS HQIVQLPDFPGG+EAFELCAKFCYGI ITLSPYNIVAARC+AEYLQMTEEVEKG
Sbjct: 459 P-DSSPHQIVQLPDFPGGIEAFELCAKFCYGITITLSPYNIVAARCSAEYLQMTEEVEKG 635
Query: 121 NLIHKLEVFFNSCILHGWKDTIVSLQTTKALHLWSEDLGITSRCIETIASKVLSHPTKVS 180
NLI KL+VFFNSCIL GWKD+IVSLQTTKALHLWSEDL ITSRCIE IASKVLSHPTKVS
Sbjct: 636 NLIQKLDVFFNSCILRGWKDSIVSLQTTKALHLWSEDLEITSRCIEAIASKVLSHPTKVS 815
Query: 181 LSHSHSRRVRDDI-SCNDTESLRIKSGSKGWWAED 214
LSHSHSRRVRDD+ SCN+TES+R KS +KGWW ED
Sbjct: 816 LSHSHSRRVRDDVSSCNETESVRHKS-NKGWWGED 917
>BP053377
Length = 484
Score = 151 bits (381), Expect = 4e-37
Identities = 78/109 (71%), Positives = 88/109 (80%), Gaps = 1/109 (0%)
Frame = -3
Query: 529 ELQSNIKALLTTHGIDPSKHTTTQLSSTTSIQGEDNWSVSGFKSPKSKSSTLRMKLAEEH 588
+L SNIK LLT HGIDPSKH LS+T SI EDNWSVSGFKSPKS+SSTLRMKLAE+H
Sbjct: 482 DLPSNIKTLLTAHGIDPSKHPAP-LSTTPSINAEDNWSVSGFKSPKSRSSTLRMKLAEDH 306
Query: 589 DEFDENGLVNDDGIGRNSKFKSICALPTQPKKMLSKLWSTNRTAT-EKN 636
D+ DENGL + D IGRNS+F+ ICALPT P+KM S+LWS NR A EKN
Sbjct: 305 DDLDENGLAH-DVIGRNSRFRGICALPTPPQKMFSQLWSANRAAAPEKN 162
>AW719754
Length = 485
Score = 139 bits (349), Expect = 2e-33
Identities = 75/172 (43%), Positives = 100/172 (57%)
Frame = +2
Query: 346 IPSLSYTNDTLYDVELVMTILEQFMLQGQSPPTSPPRSLKTFERRRSRSAENINFELQES 405
+PS SY N+TLYDV+ V IL F+ E +
Sbjct: 2 VPSYSYLNETLYDVDCVARILSHFL-------------------------EGLEAGNTVE 106
Query: 406 RRSSSASHSSKLKVAKLVDRYLQEVARDVNFSLSKFIALADIIPEFARYDHDDLYRAIDI 465
++A S + V KL+D YL E+A D N +F A +P+ AR D LYRA+D+
Sbjct: 107 GGDAAARSPSLMLVGKLIDGYLSEIASDANLKPERFYTFAISLPDQARLFDDGLYRAVDV 286
Query: 466 YLKAHPELNKSERKRLCRILDCKKLSMEACMHAAQNELLPLRVVVQVLFFEQ 517
YLKAHP +++SER+++C +LDC+KL++EAC HAAQNE LPLR VVQVLFFEQ
Sbjct: 287 YLKAHPWVSESEREKICGLLDCQKLTLEACTHAAQNERLPLRAVVQVLFFEQ 442
>AV777782
Length = 424
Score = 132 bits (333), Expect = 1e-31
Identities = 74/165 (44%), Positives = 100/165 (59%)
Frame = +1
Query: 334 LQLEEATVNDLLIPSLSYTNDTLYDVELVMTILEQFMLQGQSPPTSPPRSLKTFERRRSR 393
+Q EEATV+DLL PS S + YD ELV+ +LE F+ K ++R
Sbjct: 4 IQFEEATVSDLLYPSTSPLDQNFYDTELVLAVLESFV--------------KFWKRISPG 141
Query: 394 SAENINFELQESRRSSSASHSSKLKVAKLVDRYLQEVARDVNFSLSKFIALADIIPEFAR 453
+ +N +F L+ R KV KL+D YLQ VARD N + KF+ALA+ +P R
Sbjct: 142 AVDNRHF-LRSIR-----------KVGKLIDSYLQVVARDENMPVQKFVALAETVPAIGR 285
Query: 454 YDHDDLYRAIDIYLKAHPELNKSERKRLCRILDCKKLSMEACMHA 498
+HDDLYRAI+IYLK HP+L+K ++K LCR L+C++LS E C HA
Sbjct: 286 IEHDDLYRAINIYLKVHPDLSKVDKKCLCRSLECQRLSPEVCAHA 420
>BP038948
Length = 508
Score = 108 bits (269), Expect = 3e-24
Identities = 58/151 (38%), Positives = 88/151 (57%), Gaps = 4/151 (2%)
Frame = +3
Query: 5 KLGSRPDTFYTSEAIRTISSEVSSDLIIQVRGSRYLLHKFPLLSKCLCLQRLCSESPPDS 64
KL SR ++++ + + SD+++Q+ + LHK PL+SK +L +E +
Sbjct: 57 KLSSRGNSWFCTTGL-------PSDIVVQLDDMNFHLHKIPLMSKSRKFHQLITEQDDEE 215
Query: 65 S----HHQIVQLPDFPGGVEAFELCAKFCYGIQITLSPYNIVAARCAAEYLQMTEEVEKG 120
H + L DFPGG EAFEL KFCY ++I LS N+ + RCA E+L+MTEE +
Sbjct: 216 EGEDVEHLHLALADFPGGSEAFELAVKFCYDVKIDLSSSNVASLRCAGEFLEMTEEYSED 395
Query: 121 NLIHKLEVFFNSCILHGWKDTIVSLQTTKAL 151
NLI K E F + +L+ KD+I +LQ+ + L
Sbjct: 396 NLISKTEQFLSRSVLNSVKDSITALQSCERL 488
>BE122477
Length = 420
Score = 107 bits (267), Expect = 6e-24
Identities = 64/156 (41%), Positives = 89/156 (57%)
Frame = +3
Query: 345 LIPSLSYTNDTLYDVELVMTILEQFMLQGQSPPTSPPRSLKTFERRRSRSAENINFELQE 404
LIP+ S +D LY+ + + I++ F+ + P SL +
Sbjct: 15 LIPTYS-DSDALYNTDCIEHIVQHFIRAESNLTAFSPSSL-------------------D 134
Query: 405 SRRSSSASHSSKLKVAKLVDRYLQEVARDVNFSLSKFIALADIIPEFARYDHDDLYRAID 464
SS +S SSK KVAKL+D Y+ E+A DVN K ALA+ +PE +R HD LYRA+D
Sbjct: 135 QHASSPSSESSK-KVAKLIDSYIAEIASDVNLKPGKIRALAEGLPESSRLLHDGLYRALD 311
Query: 465 IYLKAHPELNKSERKRLCRILDCKKLSMEACMHAAQ 500
IY KAHP L+ E++ LC I+D +KLS+ AC HA+Q
Sbjct: 312 IYFKAHPWLSDKEKEELCNIIDYRKLSIHACAHASQ 419
>AV409178
Length = 309
Score = 103 bits (258), Expect = 6e-23
Identities = 53/99 (53%), Positives = 70/99 (70%)
Frame = +1
Query: 402 LQESRRSSSASHSSKLKVAKLVDRYLQEVARDVNFSLSKFIALADIIPEFARYDHDDLYR 461
L ES S S ++ +KV+KLVD YL E+A D N LSKF+ +A+ +P AR HD LYR
Sbjct: 13 LFESDSPPSPSQTALVKVSKLVDNYLAEIAPDANLKLSKFLVIAETLPAHARTVHDGLYR 192
Query: 462 AIDIYLKAHPELNKSERKRLCRILDCKKLSMEACMHAAQ 500
AIDIYLKAH L+ ++K+LC+++D +KLS EA HAAQ
Sbjct: 193 AIDIYLKAHQGLSDLDKKKLCKMIDFQKLSHEAGAHAAQ 309
>BP061165
Length = 402
Score = 94.7 bits (234), Expect = 4e-20
Identities = 56/91 (61%), Positives = 68/91 (74%), Gaps = 2/91 (2%)
Frame = -2
Query: 547 KHTTTQLSSTTSIQGEDNWSVSGFKSPKS--KSSTLRMKLAEEHDEFDENGLVNDDGIGR 604
KHT LS+TTSI +D+WSVSGFKSPKS ++STLRMKLAE+ D+ DE + DGIGR
Sbjct: 401 KHTAP-LSTTTSIHADDHWSVSGFKSPKSITRNSTLRMKLAED-DDLDE----SSDGIGR 240
Query: 605 NSKFKSICALPTQPKKMLSKLWSTNRTATEK 635
NS+FK PK+MLSKLWST+R+AT K
Sbjct: 239 NSRFK--------PKRMLSKLWSTHRSATTK 171
>AV766903
Length = 548
Score = 90.1 bits (222), Expect = 1e-18
Identities = 59/173 (34%), Positives = 92/173 (53%), Gaps = 3/173 (1%)
Frame = -3
Query: 299 EKGAVSCSFLLKLLKASNILNASSSSKMELARRVGLQLEEATVNDLLIPS---LSYTNDT 355
++ ++SC L +L+ + L+ S SS+ +L +G L++AT+++LLIPS +SY
Sbjct: 504 DQSSISCKTLFGILRVTLSLSISKSSRNKLENMIGSHLDQATLDNLLIPSPNGISY---- 337
Query: 356 LYDVELVMTILEQFMLQGQSPPTSPPRSLKTFERRRSRSAENINFELQESRRSSSASHSS 415
LYDV LV+ L+ F+ QG S PT P ++
Sbjct: 336 LYDVNLVLRFLKAFLRQGNSLPT--PIQMR------------------------------ 253
Query: 416 KLKVAKLVDRYLQEVARDVNFSLSKFIALADIIPEFARYDHDDLYRAIDIYLK 468
KVA+L+D YL E+A D SKF+AL +P+ AR +D+LY A+D+YL+
Sbjct: 252 --KVARLIDLYLAEIAPDPCLKASKFLALVTALPDSARDSYDELYHAMDMYLE 100
>BI420384
Length = 319
Score = 88.6 bits (218), Expect = 3e-18
Identities = 41/103 (39%), Positives = 72/103 (69%)
Frame = +3
Query: 268 LAESESNSDSASEITSKHRLLLESIVSLLPTEKGAVSCSFLLKLLKASNILNASSSSKME 327
L + E +++S + K R +E++V +LP EK AV C+FLL+LL+ +N++ S + E
Sbjct: 6 LTQFEESTESVTTSWMKKRFFMETLVGVLPPEKDAVPCNFLLRLLRTANMVGVEGSYRQE 185
Query: 328 LARRVGLQLEEATVNDLLIPSLSYTNDTLYDVELVMTILEQFM 370
L +R+ QL++A++ +L+IPS S+T TL DVELV+ ++++F+
Sbjct: 186 LEKRISWQLDQASLKELVIPSFSHTCGTLLDVELVIRLVKRFV 314
>TC11048 similar to UP|O04343 (O04343) At2g30520 protein, partial (79%)
Length = 514
Score = 88.6 bits (218), Expect = 3e-18
Identities = 47/141 (33%), Positives = 77/141 (54%)
Frame = +2
Query: 23 SSEVSSDLIIQVRGSRYLLHKFPLLSKCLCLQRLCSESPPDSSHHQIVQLPDFPGGVEAF 82
S E+ +D+I+QV + + LHKF L+ K +++L E+ + S + L D PGG F
Sbjct: 98 SQEIPTDVIVQVGEASFCLHKFMLVKKSNYIRKLIWEA--EESELTTINLSDIPGGAGTF 271
Query: 83 ELCAKFCYGIQITLSPYNIVAARCAAEYLQMTEEVEKGNLIHKLEVFFNSCILHGWKDTI 142
E AKFCYG+ ++ +N+ RCAAE+L+MT+E +L + E F + +
Sbjct: 272 EKAAKFCYGVNFEITVHNVAVLRCAAEFLEMTDEYCDNSLAGRTEDFLSQVAFFTLTGAV 451
Query: 143 VSLQTTKALHLWSEDLGITSR 163
L++ + L ++DL I R
Sbjct: 452 TVLKSCRHLLPIADDLSIVER 514
>TC18871 weakly similar to UP|O04344 (O04344) At2g30510 protein, partial
(34%)
Length = 565
Score = 78.2 bits (191), Expect = 4e-15
Identities = 63/183 (34%), Positives = 85/183 (46%)
Frame = +2
Query: 244 ALKIYASRWLPNISKNGNRKKNVSLAESESNSDSASEITSKHRLLLESIVSLLPTEKGAV 303
AL YA R + +++ G R + S +S N R LLESIV L P+EK
Sbjct: 119 ALITYAERAIRDLTGKGIRSSDSSETDSRVNQ----------RKLLESIVELFPSEKTVF 268
Query: 304 SCSFLLKLLKASNILNASSSSKMELARRVGLQLEEATVNDLLIPSLSYTNDTLYDVELVM 363
FL LL+ + L AS + K +L +R+ L LE TV+DLL+ S SY D L+D+E V
Sbjct: 269 PMHFLCCLLRCAIHLRASGTCKSDLEKRISLILEHVTVDDLLVLSFSYDGDKLFDLESVR 448
Query: 364 TILEQFMLQGQSPPTSPPRSLKTFERRRSRSAENINFELQESRRSSSASHSSKLKVAKLV 423
I+ F+ + +S P ESR S SA+ VAK V
Sbjct: 449 KIVSGFVEKEKSGAVPSP---------------------GESRESCSAATQG---VAKTV 556
Query: 424 DRY 426
D Y
Sbjct: 557 DAY 565
>AV407064
Length = 377
Score = 75.5 bits (184), Expect = 2e-14
Identities = 42/123 (34%), Positives = 69/123 (55%), Gaps = 1/123 (0%)
Frame = +1
Query: 236 VPSNLIGDALKIYASRWLPNISKNG-NRKKNVSLAESESNSDSASEITSKHRLLLESIVS 294
+ +I +L YA +LP +++ + + + L + S E ++LLE I
Sbjct: 16 IRQEIIAGSLAFYAKMYLPGLNRRQVSGESSTRLTQMALGSPPCEE---DQKILLEEINR 186
Query: 295 LLPTEKGAVSCSFLLKLLKASNILNASSSSKMELARRVGLQLEEATVNDLLIPSLSYTND 354
LLP +KG V FL LL+ + IL SS +L +R+G+QL++A + DLL+P+ SY+ +
Sbjct: 187 LLPLQKGLVQTKFLFGLLRTAMILRVDSSCISDLEKRIGMQLDQANLEDLLMPTFSYSME 366
Query: 355 TLY 357
TLY
Sbjct: 367 TLY 375
>AV415011
Length = 238
Score = 74.3 bits (181), Expect = 5e-14
Identities = 40/78 (51%), Positives = 52/78 (66%), Gaps = 1/78 (1%)
Frame = +2
Query: 392 SRSAENINFELQESRRSSSASH-SSKLKVAKLVDRYLQEVARDVNFSLSKFIALADIIPE 450
S+S + ELQE R AS+ S K+KV KLVD YL E+ARD + +S F+ LA+++
Sbjct: 2 SQSESLLEDELQEIRSPRMASNPSKKIKVVKLVDGYLAEIARDPSLPVSNFVDLAELVSS 181
Query: 451 FARYDHDDLYRAIDIYLK 468
F R HD LYRAID+YLK
Sbjct: 182 FPRQTHDGLYRAIDMYLK 235
>TC12833 similar to UP|Q9LYW0 (Q9LYW0) Photoreceptor-interacting
protein-like (Non-phototropic hypocotyl-like protein),
partial (15%)
Length = 734
Score = 47.4 bits (111), Expect(2) = 6e-13
Identities = 18/32 (56%), Positives = 28/32 (87%)
Frame = +2
Query: 463 IDIYLKAHPELNKSERKRLCRILDCKKLSMEA 494
IDIYLK HP + SE++++CR+++C+KLS+EA
Sbjct: 32 IDIYLKTHPWMTDSEKEQICRLMNCQKLSLEA 127
Score = 43.5 bits (101), Expect(2) = 6e-13
Identities = 21/27 (77%), Positives = 23/27 (84%)
Frame = +1
Query: 497 HAAQNELLPLRVVVQVLFFEQARAASS 523
HAAQNE LPLRVVVQVLFFEQ + +S
Sbjct: 133 HAAQNERLPLRVVVQVLFFEQLKLRTS 213
>BP042810
Length = 503
Score = 61.6 bits (148), Expect = 4e-10
Identities = 25/44 (56%), Positives = 33/44 (74%)
Frame = -3
Query: 70 VQLPDFPGGVEAFELCAKFCYGIQITLSPYNIVAARCAAEYLQM 113
V DFPGG +AFE+ AKFCYG++ LSP N+ + RCA E+L+M
Sbjct: 132 VTFTDFPGGSDAFEMAAKFCYGVKTELSPCNVASLRCAGEFLEM 1
>AV409560
Length = 375
Score = 57.0 bits (136), Expect = 9e-09
Identities = 29/75 (38%), Positives = 44/75 (58%)
Frame = +3
Query: 23 SSEVSSDLIIQVRGSRYLLHKFPLLSKCLCLQRLCSESPPDSSHHQIVQLPDFPGGVEAF 82
S E+ SD+ + + + Y LHKF L++K ++ L E+ + S + L D PGG EAF
Sbjct: 153 SQEIPSDVTVTIGEADYSLHKFMLVAKSNYIRELIIEA--EDSDLTRIDLSDIPGGQEAF 326
Query: 83 ELCAKFCYGIQITLS 97
E AKFCYG+ ++
Sbjct: 327 EKAAKFCYGVNFEIT 371
>AV417132
Length = 336
Score = 52.0 bits (123), Expect = 3e-07
Identities = 26/56 (46%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Frame = +1
Query: 74 DFPGGVEAFELCAKFCYGI-QITLSPYNIVAARCAAEYLQMTEEVE-KGNLIHKLE 127
DFPGG E FEL +FCY +SP N++ + CAAEY++M E V NL+ + E
Sbjct: 166 DFPGGAEGFELMLRFCYNNGTADISPSNLLLSHCAAEYMEMNESVAGVSNLLKQTE 333
>BP077118
Length = 354
Score = 42.7 bits (99), Expect = 2e-04
Identities = 30/104 (28%), Positives = 43/104 (40%), Gaps = 31/104 (29%)
Frame = +3
Query: 20 RTISSEVSSDLIIQVRGSRYLLHKFP-------------------------------LLS 48
R S E+ SD+ + + + Y LHK P L++
Sbjct: 39 RVFSQEIPSDVTVTIGEADYSLHKVPKYALHGKLMMLFLYFQFKMVQILIRNC*QFMLVA 218
Query: 49 KCLCLQRLCSESPPDSSHHQIVQLPDFPGGVEAFELCAKFCYGI 92
K ++ L E+ + S + L D PGG EAFE AKFCYG+
Sbjct: 219 KSNYIRELIIEA--EDSDLTRIDLSDIPGGQEAFEKAAKFCYGV 344
>TC18095 similar to UP|Q94A73 (Q94A73) AT5g66560/K1F13_23, partial (8%)
Length = 638
Score = 41.6 bits (96), Expect = 4e-04
Identities = 27/85 (31%), Positives = 40/85 (46%), Gaps = 19/85 (22%)
Frame = +3
Query: 28 SDLIIQVRGSRYLLHKFPLLSKCLCLQRLCS-------------ESPPDSSHHQIVQ--- 71
SD++++V + LHKFPL+SK L L + + D +IV+
Sbjct: 381 SDMVVEVDDMTFHLHKFPLMSKSRKLHDLITQQEEATRSTLPQQQQEEDEDEDEIVEEQL 560
Query: 72 ---LPDFPGGVEAFELCAKFCYGIQ 93
DFPGG +A E AKF G++
Sbjct: 561 QVTFTDFPGGSDALERAAKFGDGVK 635
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.316 0.130 0.371
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,275,508
Number of Sequences: 28460
Number of extensions: 164025
Number of successful extensions: 985
Number of sequences better than 10.0: 64
Number of HSP's better than 10.0 without gapping: 966
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 974
length of query: 636
length of database: 4,897,600
effective HSP length: 96
effective length of query: 540
effective length of database: 2,165,440
effective search space: 1169337600
effective search space used: 1169337600
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)
Medicago: description of AC119414.2