TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC119408.7 + phase: 0 /pseudo
         (218 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC13291                                                               277  9e-76
AV417724                                                              114  1e-26
BP030173                                                               57  2e-09
TC14340 homologue to UP|Q9ZW85 (Q9ZW85) 3-isopropylmalate dehydr...    28  0.93
TC20083 homologue to UP|Q8RVQ6 (Q8RVQ6) SEC6, partial (11%)            26  4.6
TC8009 homologue to UP|Q9LKJ2 (Q9LKJ2) Cytosolic phosphoglycerat...    26  4.6
TC7926 homologue to UP|PGKH_TOBAC (Q42961) Phosphoglycerate kina...    26  6.1
AV408801                                                               25  7.9
TC13974 similar to UP|Q9SXE3 (Q9SXE3) T3P18.10, partial (14%)          25  7.9

>TC13291 
          Length = 564

 Score =  277 bits (709), Expect = 9e-76
 Identities = 136/150 (90%), Positives = 141/150 (93%)
 Frame = +1

Query: 1   MAAPFFSTPFQPYVYQSQQDAIIPFQILGGESQVVQIMLKPHEKIIAKPGSMCFMSGSVE 60
           MAAPFFSTPFQPYVYQS QD IIPFQILGGESQVVQIMLKP EKIIAKPGSMCFMSGS+E
Sbjct: 115 MAAPFFSTPFQPYVYQSPQDEIIPFQILGGESQVVQIMLKPQEKIIAKPGSMCFMSGSIE 294

Query: 61  MENAYLPENEVGIWQWLFGKTVTNIVVRNSGPSDGFVGIAAPYFARILPIDLATFNGEIL 120
           MENAYLPENEVG  QWLFGKT+T+IV+ NSGPSDGFVGIAAPYFARILPIDLA FNG IL
Sbjct: 295 MENAYLPENEVGFRQWLFGKTITSIVLCNSGPSDGFVGIAAPYFARILPIDLAMFNGGIL 474

Query: 121 CQPDAFLCSVNDVKVSNTVDQRGRNVVAGA 150
           CQPDAFLCSVNDVKVSNT DQRG+NVVAGA
Sbjct: 475 CQPDAFLCSVNDVKVSNTFDQRGQNVVAGA 564


>AV417724 
          Length = 315

 Score =  114 bits (285), Expect = 1e-26
 Identities = 55/60 (91%), Positives = 57/60 (94%)
 Frame = +2

Query: 1   MAAPFFSTPFQPYVYQSQQDAIIPFQILGGESQVVQIMLKPHEKIIAKPGSMCFMSGSVE 60
           MAAPFFSTPFQPYVYQS QDAII FQILGGE+QVVQIMLKP EKIIAKPGSMCFMSGS+E
Sbjct: 134 MAAPFFSTPFQPYVYQSPQDAIIAFQILGGEAQVVQIMLKPEEKIIAKPGSMCFMSGSIE 313


>BP030173 
          Length = 498

 Score = 57.4 bits (137), Expect = 2e-09
 Identities = 26/28 (92%), Positives = 28/28 (99%)
 Frame = -2

Query: 186 DVSCIVAVTSTVDIQIKYNGPARRTMFG 213
           DVSCIVAVTSTV++QIKYNGPARRTMFG
Sbjct: 497 DVSCIVAVTSTVNVQIKYNGPARRTMFG 414


>TC14340 homologue to UP|Q9ZW85 (Q9ZW85) 3-isopropylmalate dehydratase,
           small subunit, partial (16%)
          Length = 548

 Score = 28.5 bits (62), Expect = 0.93
 Identities = 14/26 (53%), Positives = 18/26 (68%)
 Frame = +1

Query: 55  MSGSVEMENAYLPENEVGIWQWLFGK 80
           +S S+ MEN YLPE+ V + Q  FGK
Sbjct: 142 VSVSIGMENFYLPEDHVDL*Q*RFGK 219


>TC20083 homologue to UP|Q8RVQ6 (Q8RVQ6) SEC6, partial (11%)
          Length = 562

 Score = 26.2 bits (56), Expect = 4.6
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -2

Query: 121 CQPDAFLCSVNDVKVSNTVDQRGRNVVAGAEVFLRQKLSGQGL 163
           C+    + S  + K+  +   R  NVV   EVF    +SG+GL
Sbjct: 174 CELATQIKSNQNAKIEESEISREENVVVRVEVFSATSVSGRGL 46


>TC8009 homologue to UP|Q9LKJ2 (Q9LKJ2) Cytosolic phosphoglycerate kinase  ,
            complete
          Length = 1697

 Score = 26.2 bits (56), Expect = 4.6
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +2

Query: 157  KLSGQGLAFILGGGSVVQKILEVG 180
            +LSG+G+  I+GGG  V  + +VG
Sbjct: 1211 ELSGKGVTTIIGGGDSVAAVEKVG 1282


>TC7926 homologue to UP|PGKH_TOBAC (Q42961) Phosphoglycerate kinase,
            chloroplast precursor  , partial (86%)
          Length = 1857

 Score = 25.8 bits (55), Expect = 6.1
 Identities = 11/23 (47%), Positives = 16/23 (68%)
 Frame = +1

Query: 158  LSGQGLAFILGGGSVVQKILEVG 180
            LSG+G+  I+GGG  V  + +VG
Sbjct: 1378 LSGKGVTTIIGGGDSVAAVEKVG 1446


>AV408801 
          Length = 308

 Score = 25.4 bits (54), Expect = 7.9
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = +2

Query: 157 KLSGQGLAFILGGGSVVQK 175
           KL GQGL +ILG  S  QK
Sbjct: 107 KLEGQGLCYILGSVSCNQK 163


>TC13974 similar to UP|Q9SXE3 (Q9SXE3) T3P18.10, partial (14%)
          Length = 528

 Score = 25.4 bits (54), Expect = 7.9
 Identities = 19/54 (35%), Positives = 26/54 (47%)
 Frame = +2

Query: 21  AIIPFQILGGESQVVQIMLKPHEKIIAKPGSMCFMSGSVEMENAYLPENEVGIW 74
           A+ PFQ+   +  V QI L P E  + +  S CF    VEM+  Y  E +   W
Sbjct: 248 ALRPFQVDYKDWLVAQIGLPPLEDWMEQMYSECF-KNLVEMKENYRDEWDDNQW 406


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.322    0.139    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,428,752
Number of Sequences: 28460
Number of extensions: 40497
Number of successful extensions: 178
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of query: 218
length of database: 4,897,600
effective HSP length: 87
effective length of query: 131
effective length of database: 2,421,580
effective search space: 317226980
effective search space used: 317226980
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)