BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC119408.12 + phase: 0 /partial
(467 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC17988 similar to UP|Q9FKP3 (Q9FKP3) Similarity to auxin-indepe... 130 6e-31
CB826637 96 1e-20
TC16052 homologue to UP|Q9LIN9 (Q9LIN9) Similarity to the auxin-... 82 1e-16
AV420310 74 4e-14
BP072051 70 7e-13
AV409205 67 5e-12
BP069184 54 4e-08
BP063769 51 5e-07
TC15667 49 1e-06
AV409670 49 2e-06
AV420093 44 7e-05
TC17443 38 0.003
BP042688 38 0.003
AV780410 32 0.22
BP053751 31 0.49
TC9884 weakly similar to GB|AAO63337.1|28950827|BT005273 At5g585... 29 1.9
CB827473 27 7.1
TC15342 homologue to GB|AAH33823.1|21707171|BC033823 DNAJC3 prot... 27 7.1
AV766229 27 7.1
AV765756 27 9.3
>TC17988 similar to UP|Q9FKP3 (Q9FKP3) Similarity to auxin-independent
growth promoter, partial (40%)
Length = 857
Score = 130 bits (326), Expect = 6e-31
Identities = 76/182 (41%), Positives = 109/182 (59%), Gaps = 5/182 (2%)
Frame = +3
Query: 199 KMANRYIAVHLRFEPDMLAFSGCYFGGGEKERQELGEIRK---RWTTLPDLSPDGE-RKR 254
K A +++ +HLRF+ DM A S C FGGG+ E+ L + R+ + L D E R +
Sbjct: 63 KNAGKFVVLHLRFDKDMAAHSACDFGGGKAEKFALAKYRQVIWQGRLLNSQFTDEELRSQ 242
Query: 255 GKCPLTPHEVGLMLRALGYTNDTYLYVASGEIYGGDETMQPLRDLFPNIYTKEMLAEE-E 313
G+CP+TP EVGL+L ALG+ N T LY+AS ++YGG+ + LR LFP + K+ LA E
Sbjct: 243 GRCPMTPEEVGLLLAALGFDNSTRLYLASHKVYGGEARISTLRQLFPLMEDKKSLASSYE 422
Query: 314 LKPFLSFSSRLAAVDYIVCDESNVFVANNNGNMARILAGQRRYMGHKRTIRPNAKKLSAL 373
+S LAA+DY V S++F++ + GNM + G R Y+ K TIRPN + L
Sbjct: 423 RFQIKGKASLLAALDYYVGLHSDIFISASPGNMHNAVVGHRTYLNLK-TIRPNLVLMGQL 599
Query: 374 FM 375
F+
Sbjct: 600 FL 605
>CB826637
Length = 571
Score = 96.3 bits (238), Expect = 1e-20
Identities = 56/136 (41%), Positives = 77/136 (56%), Gaps = 3/136 (2%)
Frame = +3
Query: 88 FANIFDVNWFINYLAKDVTIVKRVPDKVMRSMDKP--PYTMRVPRKSDPEYYLDQVLPIL 145
F I+DV FI L DV IV+ +P+ K + +R PR + +Y L +
Sbjct: 6 FHGIYDVEHFIRTLRYDVNIVESIPESEKNGKKKKIKAFQIRPPRDAPISWYTTDALKKM 185
Query: 146 LRRRVLQLTKFDYRLANDLD-DELQKLRCRVNYHALRFTKPIRQLGQRIVMRMRKMANRY 204
+ LT F +RLA ++D E Q LRCRVNYHALRF I +L Q IV ++R +
Sbjct: 186 KEHGAIYLTPFSHRLAEEIDIPEFQTLRCRVNYHALRFKPHIMKLSQSIVDKLRAQ-GPF 362
Query: 205 IAVHLRFEPDMLAFSG 220
+++HLRFE DMLAF+G
Sbjct: 363 MSIHLRFEMDMLAFAG 410
>TC16052 homologue to UP|Q9LIN9 (Q9LIN9) Similarity to the auxin-independent
growth promoter, partial (24%)
Length = 809
Score = 82.4 bits (202), Expect = 1e-16
Identities = 49/130 (37%), Positives = 75/130 (57%), Gaps = 2/130 (1%)
Frame = +3
Query: 293 MQPLRDLFPNIYTKEMLA-EEELKPFLSFSSRLAAVDYIVCDESNVFVANNNGNMARILA 351
M PLR++FPN+ TKE LA ++EL F + LAA+D++VC +S+VFV GN A+++
Sbjct: 6 MAPLRNMFPNLVTKEELATKDELDGFRKHVTSLAALDFLVCLKSDVFVMTPGGNFAKLII 185
Query: 352 GQRRYMGHK-RTIRPNAKKLSALFMARHEMDWDTFSRKVKACQRGFMGEPGEMKAGRGEF 410
G RRYMGH+ ++I+P+ +S F + M W TF V + G P E +
Sbjct: 186 GARRYMGHRLKSIKPDQGLMSKSFGDPY-MGWATFVEDVVVTHQTRTGLPEETFPNYDLW 362
Query: 411 HEYPSTCVCE 420
+ C+C+
Sbjct: 363 ENPLTPCMCK 392
>AV420310
Length = 408
Score = 74.3 bits (181), Expect = 4e-14
Identities = 48/135 (35%), Positives = 74/135 (54%), Gaps = 5/135 (3%)
Frame = +1
Query: 210 RFEPDMLAFSGCYFGGGEKERQELGEIR----KRWTTLPDLSPDGERKRGKCPLTPHEVG 265
R E D+ +GC G + + + R K T +++ + G CPLT EV
Sbjct: 1 RMEKDVWVRTGCLPGLSPEFDEIVNNERIQKPKLLTARSNMTYHERKMAGLCPLTAIEVT 180
Query: 266 LMLRALGYTNDTYLYVASGEIYGGDETMQPLRDLFPNIYTKEMLA-EEELKPFLSFSSRL 324
+L+ALG ++ +Y A G+ GG E + PL FP+ Y KE LA EL+PF +S +
Sbjct: 181 RLLKALGAPQNSRIYWAGGKPLGGKEALLPLIQEFPHFYNKEDLALPGELEPFAKKASLM 360
Query: 325 AAVDYIVCDESNVFV 339
AA+D+IV ++S+VF+
Sbjct: 361 AAIDFIVSEKSDVFM 405
>BP072051
Length = 441
Score = 70.1 bits (170), Expect = 7e-13
Identities = 33/70 (47%), Positives = 47/70 (67%), Gaps = 1/70 (1%)
Frame = -3
Query: 255 GKCPLTPHEVGLMLRALGYTNDTYLYVASGEIYGGDETMQPLRDLFPNIYTKE-MLAEEE 313
G CPLTP E LML ALG+ T++YVA +YGG + L L+P + T+E +L+ +E
Sbjct: 433 GLCPLTPEEAILMLAALGFNRKTHIYVAGSNLYGGRSRLVALTSLYPKLVTQENLLSPDE 254
Query: 314 LKPFLSFSSR 323
LKPF ++SS+
Sbjct: 253 LKPFANYSSQ 224
>AV409205
Length = 426
Score = 67.4 bits (163), Expect = 5e-12
Identities = 38/122 (31%), Positives = 65/122 (53%), Gaps = 5/122 (4%)
Frame = +3
Query: 105 VTIVKRVPDKVMRSMDKPPYTM-RVPRKSDPEYYLDQVLPILLRRRVLQLTKFD----YR 159
V +++ +P + + K + RVP + P YYL VLP+L + V++L D
Sbjct: 3 VKVIRTLPKDLKSARRKKEIPVFRVPHSASPFYYLHHVLPVLKKHSVVELVVSDGGCLQA 182
Query: 160 LANDLDDELQKLRCRVNYHALRFTKPIRQLGQRIVMRMRKMANRYIAVHLRFEPDMLAFS 219
+ E Q+LRCRV++HAL+F + +++L +I+ R+R +IA + LA+
Sbjct: 183 ILPPSFKEYQRLRCRVSFHALQFRQEVQELSAQILQRLRAPGRPFIAFDPGMTRESLAYH 362
Query: 220 GC 221
GC
Sbjct: 363 GC 368
>BP069184
Length = 505
Score = 54.3 bits (129), Expect = 4e-08
Identities = 25/54 (46%), Positives = 39/54 (71%)
Frame = -3
Query: 321 SSRLAAVDYIVCDESNVFVANNNGNMARILAGQRRYMGHKRTIRPNAKKLSALF 374
+S++ A+DYIV ES+VF+ + +GNM R + G RR++G RTI P+ + L+ LF
Sbjct: 500 ASQMPALDYIVSIESDVFIPSYSGNMDRAVEGHRRFLGRGRTISPDRQALARLF 339
>BP063769
Length = 478
Score = 50.8 bits (120), Expect = 5e-07
Identities = 17/25 (68%), Positives = 24/25 (96%)
Frame = -2
Query: 402 EMKAGRGEFHEYPSTCVCEKPFIDE 426
EM+ GRGEFHEYP++C+CE+P++DE
Sbjct: 474 EMRPGRGEFHEYPNSCICERPYVDE 400
>TC15667
Length = 750
Score = 49.3 bits (116), Expect = 1e-06
Identities = 32/119 (26%), Positives = 61/119 (50%)
Frame = +1
Query: 38 SNGYLLIAASGGLNQQRTGITDAVVVARILNATLVVPELDHNSFWKDDSDFANIFDVNWF 97
+ G+++ + + G + I DAV+VAR L ATLV+P++ S + +F +I+DV+ F
Sbjct: 376 TEGFVIFSLTNGPEYHISQIADAVIVARSLGATLVIPDI-RGSQPGEKRNFEDIYDVDVF 552
Query: 98 INYLAKDVTIVKRVPDKVMRSMDKPPYTMRVPRKSDPEYYLDQVLPILLRRRVLQLTKF 156
+ + V + K +P V + ++VP + +Y V PI + ++L +
Sbjct: 553 MKSMDGVVRVAKELPAHV---SSQKIAAVKVPSRVSEDYIAKHVEPIYRSKGNIRLATY 720
>AV409670
Length = 283
Score = 48.5 bits (114), Expect = 2e-06
Identities = 26/88 (29%), Positives = 49/88 (55%), Gaps = 4/88 (4%)
Frame = +2
Query: 125 TMRVPRKSDPEYYLDQVLPILLRRRVLQLT-KFDYRLANDLDD---ELQKLRCRVNYHAL 180
T + + P +Y+ +VLP L + +V+ + L + L E+Q+LRCRV +H+L
Sbjct: 11 TFKPTSSASPNFYVKEVLPKLKKSKVVGIIIASGGALQSALPPTMAEIQRLRCRVAFHSL 190
Query: 181 RFTKPIRQLGQRIVMRMRKMANRYIAVH 208
+F I+ LG R++ ++R + ++ H
Sbjct: 191 QFRPEIQMLGHRMIHKLRGLGQPFLVYH 274
>AV420093
Length = 215
Score = 43.5 bits (101), Expect = 7e-05
Identities = 18/39 (46%), Positives = 28/39 (71%)
Frame = +1
Query: 76 LDHNSFWKDDSDFANIFDVNWFINYLAKDVTIVKRVPDK 114
L+ N W+D S F +IFDV+ FI+ L D++IVK +P++
Sbjct: 1 LELNPVWRDSSSFMDIFDVDHFIDVLKDDISIVKELPEE 117
>TC17443
Length = 531
Score = 38.1 bits (87), Expect = 0.003
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Frame = +2
Query: 297 RDLFPNIYTKEML--AEEELKPFLSFSSRL-AAVDYIVCDESNVFVANNNGNMARILAGQ 353
RDLFP YTKE + A+++ K S S L +D+ + ES+VFV +G + +AG+
Sbjct: 11 RDLFPKTYTKEAIVPADKKSKFLDSQDSELEKVIDFYISSESDVFVPAISGLLYANVAGK 190
Query: 354 RRYMGHKRTIRP 365
R G + + P
Sbjct: 191 RIGSGKTQILVP 226
>BP042688
Length = 480
Score = 38.1 bits (87), Expect = 0.003
Identities = 19/42 (45%), Positives = 24/42 (56%), Gaps = 2/42 (4%)
Frame = -1
Query: 335 SNVFVANNNGNMARILAGQRRYM--GHKRTIRPNAKKLSALF 374
S VFV GN L G RR++ GH +TI P+ +KL LF
Sbjct: 480 SEVFVTTQGGNFPHFLMGHRRFLYDGHAKTIIPDKRKLVVLF 355
>AV780410
Length = 548
Score = 32.0 bits (71), Expect = 0.22
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = +2
Query: 10 IWESQYSKYYYGCKERGRHFYPAIRERMSNG---YLLIAASGGLNQQRTGITDAV 61
+W+ +S + C + P R + G YL + ++GGLN RTGI+D V
Sbjct: 401 LWDPPFSHGLHQCVK------PTARYNGAQGVDRYLTVRSNGGLNHMRTGISDMV 547
>BP053751
Length = 507
Score = 30.8 bits (68), Expect = 0.49
Identities = 23/71 (32%), Positives = 37/71 (51%), Gaps = 3/71 (4%)
Frame = -2
Query: 298 DLFPNIYTKE--MLAEEELKPFLSFSSRL-AAVDYIVCDESNVFVANNNGNMARILAGQR 354
DLFP YTKE M A+++ K S S + +D+ + +S+VFV +G + G+R
Sbjct: 506 DLFPKTYTKEAIMPADKKTKFLDSKDSEIEKVIDFYLSFQSDVFVPAISGLFYANVVGKR 327
Query: 355 RYMGHKRTIRP 365
G + + P
Sbjct: 326 IGSGKTQILVP 294
>TC9884 weakly similar to GB|AAO63337.1|28950827|BT005273 At5g58530
{Arabidopsis thaliana;}, partial (31%)
Length = 557
Score = 28.9 bits (63), Expect = 1.9
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Frame = +2
Query: 220 GCYFGGGEKERQ--ELGEIRKRWTTLPDLSP 248
G Y GG E+ RQ E+GE++K LP++ P
Sbjct: 26 GRYVGGAEEVRQMNEVGELKKILKALPEVDP 118
>CB827473
Length = 509
Score = 26.9 bits (58), Expect = 7.1
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -2
Query: 357 MGHKRTIRPNAKKLSALFMARH 378
+GH+ PN K+SALF + H
Sbjct: 67 LGHRNEASPNPPKISALFPSNH 2
>TC15342 homologue to GB|AAH33823.1|21707171|BC033823 DNAJC3 protein {Homo
sapiens;} , partial (5%)
Length = 566
Score = 26.9 bits (58), Expect = 7.1
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -3
Query: 240 WTTLPDLSPDGERKRGKCPLTPHEVGLMLRALGY 273
WT LP L+P G + PLT H+ L L + Y
Sbjct: 228 WTRLPLLNP*GLHQNSLNPLTGHDTCLTLLSHHY 127
>AV766229
Length = 571
Score = 26.9 bits (58), Expect = 7.1
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = -2
Query: 422 PFIDELSEDGIRPPKLAFRNLTIGTDAEINRGNEESFEL 460
P ++ E G++ + FR+L I T EIN+GN + F L
Sbjct: 327 PQNSKIQEKGLKFDESKFRSL-INT*KEINKGNHQFFSL 214
>AV765756
Length = 398
Score = 26.6 bits (57), Expect = 9.3
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +1
Query: 401 GEMKAGRGEFHEYPSTCVCEKPFIDELSEDGIR 433
GE K G F +PS +C K F + + G++
Sbjct: 52 GEEKNSIGPFFSFPSPAICPKVFKNWVGRKGLK 150
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.322 0.140 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,673,156
Number of Sequences: 28460
Number of extensions: 96164
Number of successful extensions: 402
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 396
length of query: 467
length of database: 4,897,600
effective HSP length: 94
effective length of query: 373
effective length of database: 2,222,360
effective search space: 828940280
effective search space used: 828940280
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)
Medicago: description of AC119408.12